Wall clock time and date at job start Mon Mar 30 2020 06:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00423 * 2 1 4 4 H 1.48500 * 109.47194 * 270.00519 * 3 2 1 5 5 H 1.48507 * 109.46666 * 30.00252 * 3 2 1 6 6 H 1.48492 * 109.47406 * 150.00230 * 3 2 1 7 7 C 1.37881 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99856 * 176.16553 * 7 2 1 9 9 C 1.50698 * 119.99933 * 356.16087 * 7 2 1 10 10 H 1.09006 * 109.47054 * 33.19540 * 9 7 2 11 11 C 1.52999 * 109.47326 * 273.19266 * 9 7 2 12 12 C 1.53000 * 109.46966 * 300.00162 * 11 9 7 13 13 C 1.53006 * 109.46961 * 299.99708 * 12 11 9 14 14 C 1.52999 * 109.47042 * 60.00339 * 13 12 11 15 15 C 1.52998 * 109.47164 * 299.99981 * 14 13 12 16 16 H 1.08999 * 109.47165 * 299.99510 * 15 14 13 17 17 C 1.52999 * 109.47164 * 179.97438 * 15 14 13 18 18 H 1.09007 * 109.47519 * 185.73654 * 17 15 14 19 19 O 1.42898 * 109.47193 * 305.73364 * 17 15 14 20 20 C 1.53003 * 109.47302 * 65.73479 * 17 15 14 21 21 F 1.39900 * 109.46807 * 54.38546 * 20 17 15 22 22 F 1.39906 * 109.47174 * 174.38277 * 20 17 15 23 23 F 1.39894 * 109.46988 * 294.38405 * 20 17 15 24 24 H 0.96997 * 119.99822 * 185.96887 * 1 2 3 25 25 H 1.08994 * 109.46729 * 60.00146 * 11 9 7 26 26 H 1.08999 * 109.46680 * 180.02562 * 11 9 7 27 27 H 1.09004 * 109.47016 * 180.02562 * 12 11 9 28 28 H 1.08998 * 109.47254 * 59.99659 * 12 11 9 29 29 H 1.08998 * 109.47618 * 300.00113 * 13 12 11 30 30 H 1.08997 * 109.46950 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.47575 * 179.97438 * 14 13 12 32 32 H 1.09008 * 109.47461 * 59.99872 * 14 13 12 33 33 H 0.96701 * 113.99913 * 60.00268 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0828 -1.1951 -0.0631 9 6 1.2535 -2.4977 0.0863 10 1 0.2959 -2.4001 -0.4252 11 6 1.0133 -2.8512 1.5554 12 6 2.3575 -2.9881 2.2733 13 6 3.1793 -4.0953 1.6101 14 6 3.4195 -3.7419 0.1410 15 6 2.0754 -3.6048 -0.5769 16 1 1.5322 -4.5478 -0.5142 17 6 2.3155 -3.2508 -2.0459 18 1 1.3605 -3.0533 -2.5329 19 8 3.1409 -2.0871 -2.1266 20 6 3.0124 -4.4198 -2.7450 21 9 2.2659 -5.5879 -2.5562 22 9 3.1170 -4.1494 -4.1136 23 9 4.2912 -4.5911 -2.2044 24 1 -0.4850 -0.8355 0.0874 25 1 0.4278 -2.0625 2.0277 26 1 0.4705 -3.7943 1.6180 27 1 2.1864 -3.2404 3.3198 28 1 2.9007 -2.0453 2.2105 29 1 2.6362 -5.0383 1.6728 30 1 4.1367 -4.1932 2.1218 31 1 4.0053 -4.5304 -0.3314 32 1 3.9627 -2.7989 0.0782 33 1 4.0087 -2.1909 -1.7126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261124353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:00 Heat of formation + Delta-G solvation = -241.861813 kcal Electronic energy + Delta-G solvation = -20693.626789 eV Core-core repulsion = 17109.708889 eV Total energy + Delta-G solvation = -3583.917900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.108 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.19229 -48.70438 -48.63282 -40.42678 -37.30026 -34.66856 -32.46291 -31.04766 -29.16580 -26.26779 -24.57541 -23.25454 -22.22963 -20.77260 -19.62629 -19.55910 -19.11980 -17.87859 -16.93273 -16.45218 -16.09837 -15.58601 -15.48518 -15.20768 -15.12669 -14.95338 -14.85893 -14.79920 -14.70788 -14.53750 -13.58758 -13.28883 -12.86698 -12.69556 -12.55313 -12.41809 -12.20303 -11.93517 -11.86574 -11.47641 -11.36821 -10.85442 -10.53659 -10.24359 -10.07181 -8.30452 -5.95330 1.60052 1.67342 1.68801 1.81148 2.71486 2.71965 2.86141 3.02304 3.44013 3.63311 3.84189 3.91076 4.08467 4.33953 4.45780 4.59710 4.71897 4.77476 4.87161 4.89274 5.00718 5.13972 5.26520 5.38153 5.53569 5.62140 5.67899 5.78647 6.34337 6.51138 6.62892 6.92504 7.76105 9.08209 Molecular weight = 252.11amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.009990 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.670519 B = 2802.243597 C = 3399.451990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.039 4.039 3 Si 1.101 2.899 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.033 3.967 10 H -0.003 1.003 11 C -0.102 4.102 12 C -0.103 4.103 13 C -0.103 4.103 14 C -0.125 4.125 15 C -0.100 4.100 16 H 0.073 0.927 17 C 0.097 3.903 18 H 0.116 0.884 19 O -0.517 6.517 20 C 0.424 3.576 21 F -0.182 7.182 22 F -0.188 7.188 23 F -0.176 7.176 24 H 0.254 0.746 25 H 0.019 0.981 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.187 -9.953 -1.134 12.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.235 4.235 3 Si 0.928 3.072 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.081 0.919 9 C 0.015 3.985 10 H 0.015 0.985 11 C -0.140 4.140 12 C -0.140 4.140 13 C -0.140 4.140 14 C -0.162 4.162 15 C -0.118 4.118 16 H 0.091 0.909 17 C 0.035 3.965 18 H 0.134 0.866 19 O -0.323 6.323 20 C 0.370 3.630 21 F -0.164 7.164 22 F -0.169 7.169 23 F -0.157 7.157 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.542 -8.100 -1.539 11.174 hybrid contribution 0.113 -1.825 0.099 1.831 sum 7.655 -9.925 -1.441 12.617 Atomic orbital electron populations 1.70870 1.08113 1.30038 1.51458 1.26646 0.96495 1.05569 0.94756 0.83109 0.74543 0.72933 0.76657 1.21481 1.22804 1.19220 1.22041 0.94579 0.91057 1.49187 0.91886 1.18816 0.94077 0.93751 0.91904 0.98455 1.21512 0.96911 0.97431 0.98172 1.21341 0.95912 0.99132 0.97660 1.21377 0.99941 0.97753 0.94928 1.21873 0.95652 1.02224 0.96492 1.21681 0.99052 0.99240 0.91872 0.90910 1.22912 0.94458 0.82241 0.96906 0.86590 1.86858 1.30868 1.33692 1.80916 1.21946 0.77945 0.85591 0.77563 1.93150 1.76485 1.51808 1.94944 1.93167 1.96142 1.93794 1.33803 1.93072 1.41677 1.95991 1.84990 0.93525 0.96220 0.94250 0.92707 0.92874 0.92060 0.90742 0.90251 0.91433 0.76913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.73 13.62 21.45 0.29 -57.44 16 2 C -0.04 -2.12 5.46 84.66 0.46 -1.66 16 3 Si 1.10 50.12 29.91 68.60 2.05 52.17 16 4 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.53 -25.86 4.74 25.60 0.12 -25.74 16 8 H 0.06 2.94 5.03 -2.91 -0.01 2.93 16 9 C 0.03 1.47 1.88 -11.54 -0.02 1.45 16 10 H 0.00 -0.14 6.62 -2.38 -0.02 -0.16 16 11 C -0.10 -4.21 5.44 30.59 0.17 -4.04 16 12 C -0.10 -3.60 5.70 30.60 0.17 -3.42 16 13 C -0.10 -2.96 5.92 30.60 0.18 -2.78 16 14 C -0.13 -3.82 4.02 30.59 0.12 -3.69 16 15 C -0.10 -3.49 1.84 -10.79 -0.02 -3.51 16 16 H 0.07 2.41 7.49 -2.39 -0.02 2.39 16 17 C 0.10 3.33 2.79 30.59 0.09 3.42 16 18 H 0.12 4.28 8.14 -2.38 -0.02 4.26 16 19 O -0.52 -19.22 10.53 -148.98 -1.57 -20.79 16 20 C 0.42 12.62 2.83 71.98 0.20 12.82 16 21 F -0.18 -5.32 16.48 44.97 0.74 -4.58 16 22 F -0.19 -5.82 17.31 44.97 0.78 -5.04 16 23 F -0.18 -4.85 13.65 44.97 0.61 -4.23 16 24 H 0.25 15.34 6.65 -92.71 -0.62 14.72 16 25 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.05 2.07 7.22 -2.39 -0.02 2.05 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.13 5.47 -2.39 -0.01 2.12 16 32 H 0.07 2.19 4.98 -2.38 -0.01 2.17 16 33 H 0.38 11.88 6.38 -74.06 -0.47 11.41 16 Total: -1.00 -58.87 262.12 5.21 -53.66 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.82 Total: 13.41 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 1.48 Total: -27.16 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.29 Total: -57.44 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -1.57 Total: -20.79 kcal Atomic # 9 Polarization: -15.98 SS G_CDS: 2.13 Total: -13.85 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal Total: -58.87 5.21 -53.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.205 kcal (2) G-P(sol) polarization free energy of solvation -58.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds