Wall clock time and date at job start Mon Mar 30 2020 06:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48500 * 109.47288 * 269.99816 * 3 2 1 5 5 H 1.48498 * 109.47092 * 30.00498 * 3 2 1 6 6 H 1.48508 * 109.46664 * 150.00319 * 3 2 1 7 7 C 1.37874 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99458 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00397 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47124 * 60.00660 * 9 7 2 11 11 C 1.52997 * 109.47441 * 300.00127 * 9 7 2 12 12 C 1.52994 * 109.47194 * 300.00273 * 11 9 7 13 13 C 1.53003 * 109.47099 * 299.99230 * 12 11 9 14 14 C 1.53005 * 109.46678 * 60.00325 * 13 12 11 15 15 H 1.09004 * 109.47081 * 59.99958 * 14 13 12 16 16 C 1.52995 * 109.47095 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.47255 * 173.99007 * 16 14 13 18 18 O 1.42906 * 109.47242 * 53.99285 * 16 14 13 19 19 C 1.53002 * 109.47235 * 293.99405 * 16 14 13 20 20 F 1.39894 * 109.47347 * 65.81777 * 19 16 14 21 21 F 1.39900 * 109.47068 * 185.82019 * 19 16 14 22 22 F 1.39900 * 109.46733 * 305.81771 * 19 16 14 23 23 C 1.53004 * 109.47080 * 299.99673 * 14 13 12 24 24 H 0.97002 * 120.00167 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47561 * 179.97438 * 11 9 7 26 26 H 1.09007 * 109.46676 * 59.99740 * 11 9 7 27 27 H 1.08999 * 109.47068 * 179.97438 * 12 11 9 28 28 H 1.08994 * 109.47574 * 59.99706 * 12 11 9 29 29 H 1.08992 * 109.47371 * 179.97438 * 13 12 11 30 30 H 1.08994 * 109.47296 * 300.00646 * 13 12 11 31 31 H 0.96698 * 114.00089 * 300.00006 * 18 16 14 32 32 H 1.08994 * 109.47574 * 300.00659 * 23 14 13 33 33 H 1.08999 * 109.47058 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 6 0.3719 -2.5805 1.2490 12 6 1.2519 -2.4997 2.4979 13 6 2.2461 -3.6626 2.4974 14 6 3.1254 -3.5812 1.2478 15 1 3.6703 -2.6372 1.2479 16 6 4.1192 -4.7444 1.2469 17 1 4.6726 -4.7488 0.3078 18 8 3.4100 -5.9771 1.3875 19 6 5.0956 -4.5820 2.4136 20 9 4.4032 -4.7090 3.6224 21 9 6.0835 -5.5696 2.3359 22 9 5.6932 -3.3186 2.3490 23 6 2.2453 -3.6621 -0.0012 24 1 -0.4850 0.8400 0.0004 25 1 -0.1734 -3.5243 1.2488 26 1 -0.3365 -1.7520 1.2494 27 1 0.6255 -2.5572 3.3880 28 1 1.7968 -1.5558 2.4980 29 1 2.8734 -3.6048 3.3869 30 1 1.7012 -4.6066 2.4973 31 1 2.8941 -6.0433 2.2027 32 1 1.7003 -4.6060 -0.0012 33 1 2.8717 -3.6037 -0.8913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261155564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:09 Heat of formation + Delta-G solvation = -228.778706 kcal Electronic energy + Delta-G solvation = -20311.150671 eV Core-core repulsion = 16727.800098 eV Total energy + Delta-G solvation = -3583.350574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.04292 -47.57630 -47.46794 -38.85298 -36.21479 -32.63556 -30.81231 -29.80294 -27.56951 -24.94550 -23.29379 -21.53389 -20.62944 -18.85710 -18.45762 -18.27206 -18.06473 -15.88558 -15.73395 -15.00367 -14.67222 -14.52048 -14.32759 -14.03962 -13.83830 -13.64227 -13.54005 -13.29534 -12.97564 -12.86659 -12.13297 -11.63205 -11.53224 -11.14248 -11.01452 -10.83476 -10.60816 -10.36201 -10.23514 -10.04856 -9.62774 -9.10975 -8.96889 -8.64308 -8.25970 -5.98319 -4.03383 2.83126 3.29352 3.36965 3.39713 3.85022 3.87662 4.13404 4.43329 4.57437 5.03230 5.14119 5.33006 5.55041 5.73903 5.98777 6.24785 6.40290 6.44124 6.51613 6.65814 6.76239 6.77604 6.95904 7.12369 7.35565 7.45039 7.53947 7.72652 7.91111 8.14669 8.45605 8.98978 9.60420 11.07363 Molecular weight = 252.11amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.007684 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.493655 B = 3643.051033 C = 4044.302589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.045 3.955 10 H 0.027 0.973 11 C -0.110 4.110 12 C -0.099 4.099 13 C -0.128 4.128 14 C -0.111 4.111 15 H 0.101 0.899 16 C 0.075 3.925 17 H 0.136 0.864 18 O -0.534 6.534 19 C 0.417 3.583 20 F -0.181 7.181 21 F -0.187 7.187 22 F -0.177 7.177 23 C -0.091 4.091 24 H 0.259 0.741 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.382 0.618 32 H 0.044 0.956 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.554 -8.673 4.916 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.027 3.973 10 H 0.045 0.955 11 C -0.148 4.148 12 C -0.136 4.136 13 C -0.165 4.165 14 C -0.130 4.130 15 H 0.119 0.881 16 C 0.013 3.987 17 H 0.154 0.846 18 O -0.341 6.341 19 C 0.363 3.637 20 F -0.162 7.162 21 F -0.168 7.168 22 F -0.159 7.159 23 C -0.128 4.128 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.108 0.892 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.232 0.768 32 H 0.063 0.937 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.696 -8.671 4.379 11.799 hybrid contribution 0.488 1.160 0.794 1.488 sum 7.184 -7.511 5.173 11.610 Atomic orbital electron populations 1.69866 1.05835 1.26241 1.50930 1.24928 0.94753 0.98821 0.95361 0.86735 0.80016 0.84051 0.78076 1.20814 1.21359 1.19915 1.21140 0.92662 0.90489 1.50012 0.92719 1.18680 0.92571 0.91737 0.94335 0.95502 1.21530 0.98777 0.99396 0.95066 1.21310 0.96875 0.97842 0.97582 1.21870 0.98444 0.99762 0.96412 1.21873 0.96084 0.96399 0.98646 0.88066 1.23500 0.92104 0.88402 0.94669 0.84623 1.86617 1.65463 1.35498 1.46492 1.21976 0.82114 0.73797 0.85861 1.93086 1.78554 1.95458 1.49152 1.93171 1.64658 1.62561 1.96434 1.93194 1.85019 1.41237 1.96429 1.21496 0.97769 0.99568 0.94008 0.93120 0.96737 0.89170 0.94688 0.91063 0.91964 0.93023 0.76803 0.93695 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.88 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.50 -12.89 6.61 -34.44 -0.23 -13.12 16 8 H 0.05 1.38 6.71 -52.48 -0.35 1.03 16 9 C 0.05 1.05 2.59 -91.77 -0.24 0.82 16 10 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.11 -2.46 5.24 -26.74 -0.14 -2.60 16 12 C -0.10 -1.96 5.70 -26.73 -0.15 -2.11 16 13 C -0.13 -2.12 4.24 -26.73 -0.11 -2.24 16 14 C -0.11 -1.90 1.70 -90.62 -0.15 -2.06 16 15 H 0.10 1.93 5.96 -51.93 -0.31 1.62 16 16 C 0.07 1.06 2.84 -26.73 -0.08 0.99 16 17 H 0.14 1.80 8.14 -51.93 -0.42 1.38 16 18 O -0.53 -7.36 12.79 -35.23 -0.45 -7.81 16 19 C 0.42 5.93 2.83 37.16 0.11 6.04 16 20 F -0.18 -2.55 13.67 2.25 0.03 -2.52 16 21 F -0.19 -2.65 17.31 2.25 0.04 -2.61 16 22 F -0.18 -2.74 16.46 2.25 0.04 -2.70 16 23 C -0.09 -1.75 4.60 -26.73 -0.12 -1.87 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 2.30 6.07 -51.92 -0.32 1.99 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.58 7.22 -51.93 -0.37 1.21 16 29 H 0.06 0.97 5.49 -51.93 -0.29 0.69 16 30 H 0.05 0.78 6.71 -51.93 -0.35 0.43 16 31 H 0.38 4.39 6.66 45.56 0.30 4.70 16 32 H 0.04 0.82 7.85 -51.93 -0.41 0.41 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 265.73 15.07 4.00 4.00 Total: -1.00 -26.92 265.73 -5.28 -32.20 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.34 Total: 2.26 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.21 Total: -14.59 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.63 Total: -23.97 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.45 Total: -7.81 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 0.11 Total: -7.83 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.92 -5.28 -32.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.579 kcal (2) G-P(sol) polarization free energy of solvation -26.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds