Wall clock time and date at job start Mon Mar 30 2020 06:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48500 * 109.47288 * 269.99816 * 3 2 1 5 5 H 1.48498 * 109.47092 * 30.00498 * 3 2 1 6 6 H 1.48508 * 109.46664 * 150.00319 * 3 2 1 7 7 C 1.37874 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99458 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00397 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47124 * 60.00660 * 9 7 2 11 11 C 1.52997 * 109.47441 * 300.00127 * 9 7 2 12 12 C 1.52994 * 109.47194 * 300.00273 * 11 9 7 13 13 C 1.53003 * 109.47099 * 299.99230 * 12 11 9 14 14 C 1.53005 * 109.46678 * 60.00325 * 13 12 11 15 15 H 1.09004 * 109.47081 * 59.99958 * 14 13 12 16 16 C 1.52995 * 109.47095 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.47255 * 173.99007 * 16 14 13 18 18 O 1.42906 * 109.47242 * 53.99285 * 16 14 13 19 19 C 1.53002 * 109.47235 * 293.99405 * 16 14 13 20 20 F 1.39894 * 109.47347 * 65.81777 * 19 16 14 21 21 F 1.39900 * 109.47068 * 185.82019 * 19 16 14 22 22 F 1.39900 * 109.46733 * 305.81771 * 19 16 14 23 23 C 1.53004 * 109.47080 * 299.99673 * 14 13 12 24 24 H 0.97002 * 120.00167 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47561 * 179.97438 * 11 9 7 26 26 H 1.09007 * 109.46676 * 59.99740 * 11 9 7 27 27 H 1.08999 * 109.47068 * 179.97438 * 12 11 9 28 28 H 1.08994 * 109.47574 * 59.99706 * 12 11 9 29 29 H 1.08992 * 109.47371 * 179.97438 * 13 12 11 30 30 H 1.08994 * 109.47296 * 300.00646 * 13 12 11 31 31 H 0.96698 * 114.00089 * 300.00006 * 18 16 14 32 32 H 1.08994 * 109.47574 * 300.00659 * 23 14 13 33 33 H 1.08999 * 109.47058 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 6 0.3719 -2.5805 1.2490 12 6 1.2519 -2.4997 2.4979 13 6 2.2461 -3.6626 2.4974 14 6 3.1254 -3.5812 1.2478 15 1 3.6703 -2.6372 1.2479 16 6 4.1192 -4.7444 1.2469 17 1 4.6726 -4.7488 0.3078 18 8 3.4100 -5.9771 1.3875 19 6 5.0956 -4.5820 2.4136 20 9 4.4032 -4.7090 3.6224 21 9 6.0835 -5.5696 2.3359 22 9 5.6932 -3.3186 2.3490 23 6 2.2453 -3.6621 -0.0012 24 1 -0.4850 0.8400 0.0004 25 1 -0.1734 -3.5243 1.2488 26 1 -0.3365 -1.7520 1.2494 27 1 0.6255 -2.5572 3.3880 28 1 1.7968 -1.5558 2.4980 29 1 2.8734 -3.6048 3.3869 30 1 1.7012 -4.6066 2.4973 31 1 2.8941 -6.0433 2.2027 32 1 1.7003 -4.6060 -0.0012 33 1 2.8717 -3.6037 -0.8913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261155564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:09 Heat of formation + Delta-G solvation = -244.865204 kcal Electronic energy + Delta-G solvation = -20311.848234 eV Core-core repulsion = 16727.800098 eV Total energy + Delta-G solvation = -3584.048137 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.108 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.17041 -48.69075 -48.61094 -40.25261 -37.60973 -34.46913 -32.26235 -31.49074 -28.91411 -26.89897 -24.55574 -23.12867 -22.06479 -20.50417 -19.60498 -19.48843 -19.19391 -17.67805 -17.19071 -16.44644 -16.20761 -15.92371 -15.46330 -15.21410 -15.03855 -14.81351 -14.79090 -14.70390 -14.62022 -14.44001 -13.62370 -13.20941 -13.12785 -12.90069 -12.68351 -12.42386 -12.36950 -11.84769 -11.75221 -11.58227 -11.37909 -10.82481 -10.69167 -10.44817 -10.18229 -8.01523 -6.11311 1.40793 1.43891 1.51333 1.69428 2.46678 2.71878 2.77378 3.00131 3.27171 3.48367 3.75420 3.89503 4.13474 4.42190 4.55395 4.73344 4.86910 4.92056 4.96898 5.02622 5.15081 5.20911 5.42996 5.47637 5.69381 5.75270 5.79426 6.00679 6.26532 6.39717 6.47696 6.99710 7.54878 9.03044 Molecular weight = 252.11amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.007684 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.493655 B = 3643.051033 C = 4044.302589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.039 3.961 10 H -0.010 1.010 11 C -0.106 4.106 12 C -0.095 4.095 13 C -0.122 4.122 14 C -0.107 4.107 15 H 0.081 0.919 16 C 0.087 3.913 17 H 0.149 0.851 18 O -0.535 6.535 19 C 0.422 3.578 20 F -0.179 7.179 21 F -0.184 7.184 22 F -0.185 7.185 23 C -0.083 4.083 24 H 0.256 0.744 25 H 0.029 0.971 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.393 0.607 32 H 0.058 0.942 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.815 -9.917 5.695 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.764 3.236 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.020 3.980 10 H 0.008 0.992 11 C -0.144 4.144 12 C -0.132 4.132 13 C -0.159 4.159 14 C -0.125 4.125 15 H 0.099 0.901 16 C 0.026 3.974 17 H 0.167 0.833 18 O -0.343 6.343 19 C 0.368 3.632 20 F -0.160 7.160 21 F -0.165 7.165 22 F -0.167 7.167 23 C -0.120 4.120 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.245 0.755 32 H 0.077 0.923 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.967 -9.925 5.166 13.735 hybrid contribution 0.058 1.518 0.540 1.612 sum 8.025 -8.406 5.706 12.947 Atomic orbital electron populations 1.70012 1.07031 1.26555 1.52311 1.25595 0.95404 1.01741 0.95647 0.85878 0.79062 0.80740 0.77939 1.20656 1.21574 1.19214 1.21439 0.92793 0.91497 1.48634 0.92659 1.18678 0.93162 0.92869 0.93268 0.99220 1.21398 0.98472 0.98589 0.95946 1.21213 0.97177 0.98045 0.96801 1.21839 0.97916 0.99279 0.96841 1.21702 0.96253 0.96934 0.97658 0.90121 1.23279 0.91420 0.87285 0.95425 0.83347 1.86625 1.65566 1.34718 1.47379 1.21870 0.82066 0.73490 0.85802 1.93088 1.78454 1.95406 1.49052 1.93180 1.64539 1.62381 1.96423 1.93186 1.85181 1.41856 1.96462 1.21334 0.97207 0.98108 0.95386 0.93475 0.95269 0.92825 0.93173 0.93924 0.90404 0.90591 0.75492 0.92332 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.21 11.32 21.45 0.24 -51.97 16 2 C 0.01 0.75 5.30 84.65 0.45 1.20 16 3 Si 0.94 42.97 29.54 68.60 2.03 44.99 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.51 -26.05 6.61 25.60 0.17 -25.88 16 8 H 0.06 2.79 6.71 -2.91 -0.02 2.77 16 9 C 0.04 1.82 2.59 -11.54 -0.03 1.79 16 10 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C -0.11 -4.75 5.24 30.59 0.16 -4.59 16 12 C -0.09 -3.67 5.70 30.59 0.17 -3.50 16 13 C -0.12 -3.72 4.24 30.60 0.13 -3.59 16 14 C -0.11 -3.41 1.70 -10.79 -0.02 -3.43 16 15 H 0.08 2.96 5.96 -2.39 -0.01 2.94 16 16 C 0.09 2.22 2.84 30.59 0.09 2.31 16 17 H 0.15 3.45 8.14 -2.39 -0.02 3.43 16 18 O -0.53 -12.68 12.79 -148.98 -1.91 -14.58 16 19 C 0.42 10.76 2.83 71.98 0.20 10.96 16 20 F -0.18 -4.43 13.67 44.97 0.61 -3.81 16 21 F -0.18 -4.66 17.31 44.97 0.78 -3.88 16 22 F -0.19 -5.30 16.46 44.97 0.74 -4.56 16 23 C -0.08 -3.06 4.60 30.60 0.14 -2.92 16 24 H 0.26 14.06 8.31 -92.71 -0.77 13.28 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 2.81 6.07 -2.38 -0.01 2.79 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.04 1.88 7.22 -2.39 -0.02 1.86 16 29 H 0.08 2.18 5.49 -2.39 -0.01 2.17 16 30 H 0.08 1.98 6.71 -2.39 -0.02 1.96 16 31 H 0.39 7.35 6.66 -74.06 -0.49 6.86 16 32 H 0.06 2.00 7.85 -2.39 -0.02 1.98 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -57.67 265.73 4.61 -53.06 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.65 Total: 8.39 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 1.47 Total: -27.64 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.24 Total: -51.97 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -1.91 Total: -14.58 kcal Atomic # 9 Polarization: -14.39 SS G_CDS: 2.13 Total: -12.25 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -57.67 4.61 -53.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.802 kcal (2) G-P(sol) polarization free energy of solvation -57.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds