Wall clock time and date at job start Mon Mar 30 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99787 * 2 1 4 4 H 1.48509 * 109.46928 * 269.99901 * 3 2 1 5 5 H 1.48502 * 109.46846 * 29.99782 * 3 2 1 6 6 H 1.48497 * 109.47144 * 150.00122 * 3 2 1 7 7 C 1.37876 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00192 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.05256 * 58.58262 * 9 7 2 11 11 C 1.54378 * 110.06835 * 297.12640 * 9 7 2 12 12 C 1.54887 * 104.21511 * 217.14732 * 11 9 7 13 13 C 1.54888 * 102.74743 * 37.92838 * 12 11 9 14 14 C 1.53869 * 110.03443 * 180.02562 * 9 7 2 15 15 H 1.09002 * 110.03268 * 238.57104 * 14 9 7 16 16 C 1.53001 * 110.03399 * 359.95158 * 14 9 7 17 17 C 1.52996 * 109.47166 * 184.30770 * 16 14 9 18 18 H 1.08992 * 109.47310 * 305.00059 * 17 16 14 19 19 O 1.42904 * 109.46784 * 65.00283 * 17 16 14 20 20 C 1.53000 * 109.47086 * 184.99922 * 17 16 14 21 21 F 1.39899 * 109.46965 * 59.99886 * 20 17 16 22 22 F 1.39898 * 109.47269 * 180.02562 * 20 17 16 23 23 F 1.39906 * 109.47390 * 300.00450 * 20 17 16 24 24 H 0.96999 * 120.00382 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.49124 * 98.45732 * 11 9 7 26 26 H 1.08999 * 110.57569 * 335.88549 * 11 9 7 27 27 H 1.09004 * 110.75643 * 279.61384 * 12 11 9 28 28 H 1.08997 * 110.75371 * 156.24365 * 12 11 9 29 29 H 1.08998 * 110.48734 * 203.38147 * 13 12 11 30 30 H 1.09004 * 110.60036 * 80.78946 * 13 12 11 31 31 H 1.09001 * 109.46850 * 304.31127 * 16 14 9 32 32 H 1.09000 * 109.46916 * 64.30768 * 16 14 9 33 33 H 0.96701 * 113.99775 * 59.99930 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 1 0.6018 -2.5558 -0.8741 11 6 0.4143 -2.6277 1.2903 12 6 0.5071 -4.1299 1.6558 13 6 1.9702 -4.4813 1.2883 14 6 2.2396 -3.6784 -0.0005 15 1 2.0702 -4.3076 -0.8744 16 6 3.6779 -3.1567 -0.0017 17 6 4.6477 -4.3351 -0.1101 18 1 4.4446 -5.0475 0.6893 19 8 4.4775 -4.9773 -1.3753 20 6 6.0851 -3.8257 0.0139 21 9 6.2518 -3.1968 1.2525 22 9 6.9720 -4.9030 -0.0857 23 9 6.3460 -2.9111 -1.0121 24 1 -0.4851 0.8400 -0.0004 25 1 -0.6214 -2.3439 1.1034 26 1 0.8393 -2.0147 2.0851 27 1 -0.1924 -4.7164 1.0600 28 1 0.3296 -4.2801 2.7207 29 1 2.0700 -5.5502 1.0999 30 1 2.6502 -4.1694 2.0811 31 1 3.8214 -2.4887 -0.8511 32 1 3.8682 -2.6135 0.9239 33 1 4.6425 -4.4011 -2.1342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261159044.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:21 Heat of formation + Delta-G solvation = -226.719388 kcal Electronic energy + Delta-G solvation = -19893.006965 eV Core-core repulsion = 16309.745690 eV Total energy + Delta-G solvation = -3583.261275 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.96844 -47.47684 -47.45909 -38.47832 -36.55893 -32.47781 -31.56591 -28.59013 -27.69742 -24.44035 -23.87431 -22.02583 -19.65814 -18.96906 -18.43210 -18.15732 -17.98537 -16.26264 -15.29712 -15.18650 -14.57402 -14.35372 -14.30985 -14.10779 -13.88778 -13.78177 -13.61476 -13.57567 -13.09095 -12.63085 -12.35432 -11.76080 -11.46223 -11.10785 -10.92778 -10.90459 -10.52087 -10.07026 -9.91330 -9.78955 -9.71226 -9.49388 -9.14285 -8.58543 -8.36219 -6.01106 -4.03626 2.85701 3.29301 3.36999 3.39577 3.87724 3.90445 4.15919 4.43419 4.60278 5.13900 5.26986 5.31478 5.57945 5.68144 5.74386 6.14626 6.27857 6.36404 6.54037 6.60065 6.69640 6.88190 6.91202 7.01918 7.26512 7.39733 7.41022 7.71431 7.87906 8.02183 8.43607 8.98587 9.61279 11.08575 Molecular weight = 252.11amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.008511 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.989860 B = 3289.106003 C = 4198.362166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.068 0.932 9 C 0.050 3.950 10 H 0.027 0.973 11 C -0.093 4.093 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.076 4.076 15 H 0.059 0.941 16 C -0.131 4.131 17 C 0.066 3.934 18 H 0.134 0.866 19 O -0.535 6.535 20 C 0.415 3.585 21 F -0.180 7.180 22 F -0.187 7.187 23 F -0.184 7.184 24 H 0.258 0.742 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.091 -8.139 0.424 11.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.086 0.914 9 C 0.032 3.968 10 H 0.046 0.954 11 C -0.131 4.131 12 C -0.170 4.170 13 C -0.157 4.157 14 C -0.094 4.094 15 H 0.077 0.923 16 C -0.168 4.168 17 C 0.005 3.995 18 H 0.151 0.849 19 O -0.340 6.340 20 C 0.361 3.639 21 F -0.161 7.161 22 F -0.168 7.168 23 F -0.166 7.166 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.827 -8.505 0.796 11.586 hybrid contribution 0.896 1.630 -0.235 1.875 sum 8.722 -6.875 0.562 11.120 Atomic orbital electron populations 1.69980 1.05900 1.26339 1.50421 1.25001 0.94743 0.98938 0.95183 0.86748 0.80027 0.84096 0.78081 1.20777 1.21359 1.19882 1.21551 0.93353 0.90377 1.50842 0.91376 1.19277 0.92081 0.91284 0.94202 0.95435 1.22304 1.00521 0.90991 0.99290 1.22594 0.95717 0.99756 0.98889 1.22446 0.97395 0.97972 0.97892 1.21691 0.93540 0.97868 0.96324 0.92266 1.22567 0.94863 0.94133 1.05224 1.23573 0.86865 0.99436 0.89626 0.84852 1.86623 1.91732 1.41243 1.14434 1.22005 0.92328 0.75725 0.73876 1.93181 1.96393 1.83127 1.43439 1.93168 1.72242 1.55584 1.95821 1.93166 1.95338 1.68293 1.59768 0.93181 0.92775 0.93007 0.92952 0.93519 0.93467 0.92442 0.89274 0.89314 0.76733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 12.44 55.43 0.69 -24.26 16 2 C 0.06 1.69 5.33 -17.82 -0.09 1.60 16 3 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.31 7.50 -34.44 -0.26 -13.57 16 8 H 0.07 1.66 4.66 -52.49 -0.24 1.41 16 9 C 0.05 1.16 2.82 -90.60 -0.26 0.91 16 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.09 -2.09 5.44 -25.01 -0.14 -2.23 16 12 C -0.13 -2.40 6.91 -24.74 -0.17 -2.57 16 13 C -0.12 -2.02 5.42 -25.10 -0.14 -2.15 16 14 C -0.08 -1.41 2.88 -89.53 -0.26 -1.67 16 15 H 0.06 1.09 7.71 -51.93 -0.40 0.69 16 16 C -0.13 -2.23 2.48 -26.73 -0.07 -2.29 16 17 C 0.07 0.93 2.89 -26.73 -0.08 0.86 16 18 H 0.13 1.76 7.34 -51.93 -0.38 1.38 16 19 O -0.53 -7.30 12.75 -35.23 -0.45 -7.75 16 20 C 0.42 5.95 2.85 37.16 0.11 6.06 16 21 F -0.18 -2.74 16.71 2.25 0.04 -2.70 16 22 F -0.19 -2.66 17.26 2.25 0.04 -2.63 16 23 F -0.18 -2.73 16.51 2.25 0.04 -2.70 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.05 1.31 7.98 -51.93 -0.41 0.90 16 26 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.94 7.77 -51.93 -0.40 0.53 16 31 H 0.09 1.62 6.60 -51.93 -0.34 1.27 16 32 H 0.09 1.63 6.80 -51.93 -0.35 1.27 16 33 H 0.38 4.20 8.69 45.56 0.40 4.60 16 LS Contribution 277.31 15.07 4.18 4.18 Total: -1.00 -27.58 277.31 -5.21 -32.79 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.38 Total: 2.33 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -1.35 Total: -15.06 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.69 Total: -24.26 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.45 Total: -7.75 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.11 Total: -8.02 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.58 -5.21 -32.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159044.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.929 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds