Wall clock time and date at job start Mon Mar 30 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99787 * 2 1 4 4 H 1.48509 * 109.46928 * 269.99901 * 3 2 1 5 5 H 1.48502 * 109.46846 * 29.99782 * 3 2 1 6 6 H 1.48497 * 109.47144 * 150.00122 * 3 2 1 7 7 C 1.37876 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00192 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.05256 * 58.58262 * 9 7 2 11 11 C 1.54378 * 110.06835 * 297.12640 * 9 7 2 12 12 C 1.54887 * 104.21511 * 217.14732 * 11 9 7 13 13 C 1.54888 * 102.74743 * 37.92838 * 12 11 9 14 14 C 1.53869 * 110.03443 * 180.02562 * 9 7 2 15 15 H 1.09002 * 110.03268 * 238.57104 * 14 9 7 16 16 C 1.53001 * 110.03399 * 359.95158 * 14 9 7 17 17 C 1.52996 * 109.47166 * 184.30770 * 16 14 9 18 18 H 1.08992 * 109.47310 * 305.00059 * 17 16 14 19 19 O 1.42904 * 109.46784 * 65.00283 * 17 16 14 20 20 C 1.53000 * 109.47086 * 184.99922 * 17 16 14 21 21 F 1.39899 * 109.46965 * 59.99886 * 20 17 16 22 22 F 1.39898 * 109.47269 * 180.02562 * 20 17 16 23 23 F 1.39906 * 109.47390 * 300.00450 * 20 17 16 24 24 H 0.96999 * 120.00382 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.49124 * 98.45732 * 11 9 7 26 26 H 1.08999 * 110.57569 * 335.88549 * 11 9 7 27 27 H 1.09004 * 110.75643 * 279.61384 * 12 11 9 28 28 H 1.08997 * 110.75371 * 156.24365 * 12 11 9 29 29 H 1.08998 * 110.48734 * 203.38147 * 13 12 11 30 30 H 1.09004 * 110.60036 * 80.78946 * 13 12 11 31 31 H 1.09001 * 109.46850 * 304.31127 * 16 14 9 32 32 H 1.09000 * 109.46916 * 64.30768 * 16 14 9 33 33 H 0.96701 * 113.99775 * 59.99930 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 1 0.6018 -2.5558 -0.8741 11 6 0.4143 -2.6277 1.2903 12 6 0.5071 -4.1299 1.6558 13 6 1.9702 -4.4813 1.2883 14 6 2.2396 -3.6784 -0.0005 15 1 2.0702 -4.3076 -0.8744 16 6 3.6779 -3.1567 -0.0017 17 6 4.6477 -4.3351 -0.1101 18 1 4.4446 -5.0475 0.6893 19 8 4.4775 -4.9773 -1.3753 20 6 6.0851 -3.8257 0.0139 21 9 6.2518 -3.1968 1.2525 22 9 6.9720 -4.9030 -0.0857 23 9 6.3460 -2.9111 -1.0121 24 1 -0.4851 0.8400 -0.0004 25 1 -0.6214 -2.3439 1.1034 26 1 0.8393 -2.0147 2.0851 27 1 -0.1924 -4.7164 1.0600 28 1 0.3296 -4.2801 2.7207 29 1 2.0700 -5.5502 1.0999 30 1 2.6502 -4.1694 2.0811 31 1 3.8214 -2.4887 -0.8511 32 1 3.8682 -2.6135 0.9239 33 1 4.6425 -4.4011 -2.1342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261159044.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:21 Heat of formation + Delta-G solvation = -243.538771 kcal Electronic energy + Delta-G solvation = -19893.736308 eV Core-core repulsion = 16309.745690 eV Total energy + Delta-G solvation = -3583.990618 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.11531 -48.63200 -48.60134 -39.90906 -37.87471 -34.43978 -32.91885 -30.20058 -29.20616 -26.02255 -25.57771 -23.25192 -21.24177 -20.48883 -19.58944 -19.46658 -19.19918 -17.89367 -16.84991 -16.49012 -16.31441 -15.82890 -15.46107 -15.35478 -15.27092 -15.03569 -14.76452 -14.73974 -14.32834 -14.27890 -13.99392 -13.35924 -13.12076 -12.79343 -12.61082 -12.42824 -12.12865 -11.59430 -11.53436 -11.31806 -11.18987 -11.16277 -10.81591 -10.47901 -10.39279 -8.06125 -6.12598 1.40442 1.43238 1.50800 1.71305 2.45987 2.73615 2.80424 3.01474 3.26337 3.50909 3.85953 4.01033 4.15442 4.27887 4.30455 4.68945 4.85248 4.94976 5.05516 5.09150 5.20036 5.24812 5.43017 5.44516 5.52164 5.72751 5.79209 5.99578 6.05658 6.43447 6.46484 7.00298 7.55043 9.03442 Molecular weight = 252.11amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.008511 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.989860 B = 3289.106003 C = 4198.362166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.939 3.061 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.079 0.921 9 C 0.040 3.960 10 H -0.010 1.010 11 C -0.090 4.090 12 C -0.123 4.123 13 C -0.112 4.112 14 C -0.070 4.070 15 H 0.065 0.935 16 C -0.124 4.124 17 C 0.082 3.918 18 H 0.152 0.848 19 O -0.537 6.537 20 C 0.419 3.581 21 F -0.185 7.185 22 F -0.183 7.183 23 F -0.188 7.188 24 H 0.255 0.745 25 H 0.022 0.978 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.658 -9.554 0.828 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.097 0.903 9 C 0.022 3.978 10 H 0.008 0.992 11 C -0.128 4.128 12 C -0.161 4.161 13 C -0.150 4.150 14 C -0.088 4.088 15 H 0.083 0.917 16 C -0.162 4.162 17 C 0.021 3.979 18 H 0.170 0.830 19 O -0.345 6.345 20 C 0.364 3.636 21 F -0.167 7.167 22 F -0.165 7.165 23 F -0.170 7.170 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.415 -9.924 1.191 13.732 hybrid contribution 0.393 2.066 -0.406 2.142 sum 9.809 -7.859 0.784 12.593 Atomic orbital electron populations 1.70122 1.07285 1.26653 1.52335 1.25744 0.95412 1.02136 0.95622 0.85848 0.79041 0.80553 0.78013 1.20504 1.21765 1.18973 1.22029 0.94089 0.91267 1.48798 0.90343 1.19296 0.92767 0.92792 0.92983 0.99208 1.22124 0.98188 0.94230 0.98261 1.22531 0.97207 0.96005 1.00353 1.22428 0.96258 0.99475 0.96807 1.21547 0.93177 0.96168 0.97932 0.91684 1.22346 0.94737 0.95155 1.03957 1.23360 0.85750 0.98276 0.90559 0.83038 1.86611 1.91627 1.41553 1.14663 1.21985 0.92437 0.75587 0.73558 1.93176 1.96431 1.83262 1.43788 1.93176 1.72130 1.55384 1.95786 1.93163 1.95386 1.68510 1.59939 0.93614 0.95880 0.95149 0.92092 0.91497 0.90304 0.91488 0.90761 0.90537 0.75392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.64 12.44 21.45 0.27 -53.37 16 2 C 0.01 0.48 5.33 84.65 0.45 0.93 16 3 Si 0.94 43.14 29.54 68.60 2.03 45.17 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.52 -26.89 7.50 25.60 0.19 -26.70 16 8 H 0.08 3.79 4.66 -2.91 -0.01 3.78 16 9 C 0.04 1.89 2.82 -10.78 -0.03 1.86 16 10 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C -0.09 -4.10 5.44 31.71 0.17 -3.93 16 12 C -0.12 -4.24 6.91 31.88 0.22 -4.02 16 13 C -0.11 -3.42 5.42 31.65 0.17 -3.25 16 14 C -0.07 -2.49 2.88 -10.09 -0.03 -2.52 16 15 H 0.06 2.25 7.71 -2.39 -0.02 2.23 16 16 C -0.12 -4.02 2.48 30.59 0.08 -3.94 16 17 C 0.08 2.06 2.89 30.59 0.09 2.15 16 18 H 0.15 3.34 7.34 -2.39 -0.02 3.32 16 19 O -0.54 -12.99 12.75 -148.98 -1.90 -14.89 16 20 C 0.42 10.93 2.85 71.98 0.21 11.13 16 21 F -0.18 -5.21 16.71 44.97 0.75 -4.45 16 22 F -0.18 -4.71 17.26 44.97 0.78 -3.93 16 23 F -0.19 -5.21 16.51 44.97 0.74 -4.46 16 24 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.02 1.15 7.98 -2.39 -0.02 1.13 16 26 H 0.03 1.47 7.85 -2.39 -0.02 1.45 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 1.94 7.77 -2.39 -0.02 1.92 16 31 H 0.07 2.60 6.60 -2.39 -0.02 2.59 16 32 H 0.08 2.67 6.80 -2.39 -0.02 2.66 16 33 H 0.40 7.63 8.69 -74.06 -0.64 6.99 16 Total: -1.00 -59.62 277.31 4.67 -54.95 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.49 Total: 9.27 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 1.52 Total: -28.27 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.27 Total: -53.37 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.90 Total: -14.89 kcal Atomic # 9 Polarization: -15.12 SS G_CDS: 2.27 Total: -12.85 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -59.62 4.67 -54.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159044.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.588 kcal (2) G-P(sol) polarization free energy of solvation -59.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds