Wall clock time and date at job start Mon Mar 30 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75888 * 125.19963 * 2 1 4 4 C 1.75890 * 90.96878 * 180.02562 * 3 2 1 5 5 C 1.33388 * 109.59049 * 359.73141 * 4 3 2 6 6 C 1.33385 * 125.20714 * 180.02562 * 2 1 3 7 7 C 1.50705 * 122.53558 * 359.97438 * 6 2 1 8 8 H 1.09000 * 110.54908 * 326.42495 * 7 6 2 9 9 C 1.54992 * 110.75105 * 89.40321 * 7 6 2 10 10 C 1.54814 * 102.09130 * 155.58747 * 9 7 6 11 11 C 1.54101 * 104.18922 * 339.11822 * 10 9 7 12 12 C 1.52998 * 110.00321 * 117.46291 * 11 10 9 13 13 C 1.50701 * 109.87787 * 238.54986 * 11 10 9 14 14 H 1.08002 * 119.99761 * 359.27687 * 13 11 10 15 15 C 1.37871 * 119.99694 * 179.56250 * 13 11 10 16 16 N 1.31523 * 119.99908 * 179.72112 * 15 13 11 17 17 Si 1.86800 * 120.00405 * 359.71709 * 15 13 11 18 18 H 1.48500 * 109.47210 * 90.00069 * 17 15 13 19 19 H 1.48504 * 109.47424 * 210.00300 * 17 15 13 20 20 H 1.48502 * 109.46888 * 330.00390 * 17 15 13 21 21 O 1.43747 * 107.28906 * 357.96993 * 11 10 9 22 22 H 1.08995 * 109.47526 * 269.97694 * 1 2 3 23 23 H 1.09007 * 109.47299 * 29.98101 * 1 2 3 24 24 H 1.09004 * 109.46967 * 149.97387 * 1 2 3 25 25 H 1.07998 * 125.20248 * 179.97438 * 4 3 2 26 26 H 1.08007 * 122.53867 * 180.24189 * 5 4 3 27 27 H 1.09003 * 110.90593 * 273.78464 * 9 7 6 28 28 H 1.08994 * 110.90849 * 37.35365 * 9 7 6 29 29 H 1.08999 * 110.48788 * 220.44117 * 10 9 7 30 30 H 1.09002 * 110.48951 * 97.79235 * 10 9 7 31 31 H 1.09007 * 109.46992 * 180.38695 * 12 11 10 32 32 H 1.09000 * 109.47405 * 300.38641 * 12 11 10 33 33 H 1.08999 * 109.47211 * 60.38849 * 12 11 10 34 34 H 0.96995 * 120.00181 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5209 1.4373 0.0000 4 6 3.9751 0.4478 -0.0008 5 6 3.6379 -0.8427 0.0049 6 6 2.2760 -1.0899 -0.0005 7 6 1.7052 -2.4846 -0.0005 8 1 0.7735 -2.5167 0.5642 9 6 1.4827 -2.9869 -1.4498 10 6 1.5318 -4.5239 -1.2715 11 6 2.2841 -4.7261 0.0581 12 6 1.3722 -5.4138 1.0761 13 6 3.5166 -5.5620 -0.1726 14 1 3.7430 -5.9285 -1.1630 15 6 4.3520 -5.8640 0.8819 16 7 5.4247 -6.5981 0.6817 17 14 3.9603 -5.2303 2.5949 18 1 3.1125 -6.2199 3.3070 19 1 5.2237 -5.0276 3.3487 20 1 3.2334 -3.9395 2.4910 21 8 2.6593 -3.4244 0.5388 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5143 25 1 4.9862 0.8272 -0.0015 26 1 4.3721 -1.6349 0.0094 27 1 0.5101 -2.6698 -1.8264 28 1 2.2823 -2.6452 -2.1070 29 1 2.0786 -4.9860 -2.0934 30 1 0.5235 -4.9327 -1.2053 31 1 1.9103 -5.5462 2.0147 32 1 0.4892 -4.7980 1.2472 33 1 1.0673 -6.3871 0.6916 34 1 6.0126 -6.8102 1.4234 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309088431.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:04 Heat of formation + Delta-G solvation = -28.352316 kcal Electronic energy + Delta-G solvation = -17058.933591 eV Core-core repulsion = 14468.883769 eV Total energy + Delta-G solvation = -2590.049822 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83633 -38.63839 -34.89262 -33.20427 -32.87375 -31.93879 -28.39677 -27.25762 -25.81372 -23.71435 -22.55340 -21.20322 -19.28977 -18.97723 -18.00718 -17.08416 -16.84026 -16.01644 -15.44484 -15.00777 -14.76655 -14.66573 -14.48890 -14.07291 -13.97648 -13.67105 -13.30379 -12.98933 -12.89321 -12.65250 -12.46832 -12.22005 -12.18602 -11.94045 -11.74851 -11.57198 -11.29480 -10.85058 -10.71902 -10.10018 -9.42138 -9.17527 -8.34323 -6.43984 0.07160 0.75245 1.02645 1.30090 1.39367 1.65438 1.76515 2.39409 2.95103 3.51715 3.87860 4.01221 4.05327 4.18221 4.24261 4.48860 4.50406 4.55898 4.69287 4.72606 4.78085 4.80380 4.89602 4.93582 5.02960 5.15015 5.20882 5.26515 5.30308 5.49790 5.52923 5.64989 5.70672 6.25147 6.48838 6.76740 7.32576 8.80310 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.027221 B = 0.007799 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.359717 B = 3589.420695 C = 4000.058047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.176 4.176 3 S 0.119 5.881 4 C -0.225 4.225 5 C -0.131 4.131 6 C -0.117 4.117 7 C 0.121 3.879 8 H 0.082 0.918 9 C -0.127 4.127 10 C -0.128 4.128 11 C 0.183 3.817 12 C -0.157 4.157 13 C -0.514 4.514 14 H 0.039 0.961 15 C 0.030 3.970 16 N -0.943 5.943 17 Si 0.938 3.062 18 H -0.276 1.276 19 H -0.314 1.314 20 H -0.213 1.213 21 O -0.385 6.385 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.179 0.821 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 15.795 -1.070 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.293 4.293 3 S 0.383 5.617 4 C -0.360 4.360 5 C -0.162 4.162 6 C -0.129 4.129 7 C 0.061 3.939 8 H 0.099 0.901 9 C -0.165 4.165 10 C -0.166 4.166 11 C 0.144 3.856 12 C -0.214 4.214 13 C -0.551 4.551 14 H 0.058 0.942 15 C -0.169 4.169 16 N -0.583 5.583 17 Si 0.766 3.234 18 H -0.203 1.203 19 H -0.243 1.243 20 H -0.135 1.135 21 O -0.306 6.306 22 H 0.103 0.897 23 H 0.106 0.894 24 H 0.103 0.897 25 H 0.196 0.804 26 H 0.134 0.866 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.274 17.356 -0.882 21.276 hybrid contribution 1.214 -2.073 0.601 2.476 sum -11.060 15.284 -0.280 18.868 Atomic orbital electron populations 1.20488 0.85557 1.04377 1.03777 1.24559 1.01359 0.94639 1.08765 1.83700 0.95778 1.08332 1.73923 1.25739 1.03178 0.96090 1.10953 1.20087 0.96551 0.96749 1.02773 1.18753 0.93296 0.95163 1.05657 1.21672 0.92114 0.86071 0.94010 0.90081 1.22985 1.02714 0.94605 0.96164 1.22828 1.00440 0.96095 0.97213 1.20062 0.92691 0.81462 0.91336 1.22414 0.98957 1.01281 0.98726 1.21317 1.08593 1.30139 0.95052 0.94249 1.25820 0.94117 0.93501 1.03467 1.70053 1.15222 1.39516 1.33518 0.86138 0.76273 0.81923 0.79034 1.20337 1.24336 1.13539 1.89222 1.51735 1.17664 1.71974 0.89714 0.89372 0.89735 0.80395 0.86610 0.87823 0.92584 0.92731 0.89370 0.95238 0.91338 0.91513 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.80 71.24 0.70 -0.80 16 2 C -0.18 -4.55 6.50 24.59 0.16 -4.39 16 3 S 0.12 2.76 23.33 -56.49 -1.32 1.44 16 4 C -0.22 -6.36 11.23 66.72 0.75 -5.61 16 5 C -0.13 -4.66 9.54 21.21 0.20 -4.46 16 6 C -0.12 -3.86 5.03 -20.92 -0.11 -3.96 16 7 C 0.12 4.25 2.95 30.53 0.09 4.34 16 8 H 0.08 2.51 7.50 -2.39 -0.02 2.49 16 9 C -0.13 -4.08 6.58 31.89 0.21 -3.87 16 10 C -0.13 -4.79 6.27 31.59 0.20 -4.59 16 11 C 0.18 8.39 0.70 -11.17 -0.01 8.38 16 12 C -0.16 -6.44 8.12 71.98 0.58 -5.85 16 13 C -0.51 -29.76 8.86 25.60 0.23 -29.53 16 14 H 0.04 2.51 7.58 -2.91 -0.02 2.49 16 15 C 0.03 1.79 5.45 84.65 0.46 2.25 16 16 N -0.94 -60.62 13.96 21.45 0.30 -60.32 16 17 Si 0.94 47.86 23.93 68.60 1.64 49.50 16 18 H -0.28 -13.37 6.86 99.48 0.68 -12.69 16 19 H -0.31 -16.36 7.11 99.48 0.71 -15.66 16 20 H -0.21 -10.42 5.37 99.48 0.53 -9.88 16 21 O -0.39 -17.69 6.79 -148.98 -1.01 -18.71 16 22 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.08 1.42 7.32 -2.38 -0.02 1.40 16 25 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 26 H 0.12 4.84 7.72 -2.91 -0.02 4.81 16 27 H 0.10 2.48 8.06 -2.39 -0.02 2.46 16 28 H 0.06 1.96 8.05 -2.39 -0.02 1.94 16 29 H 0.05 2.22 7.40 -2.39 -0.02 2.21 16 30 H 0.09 2.72 7.70 -2.39 -0.02 2.71 16 31 H 0.03 1.30 3.23 -2.38 -0.01 1.29 16 32 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 33 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -69.77 281.85 3.97 -65.80 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.89 Total: 10.39 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 3.47 Total: -48.11 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.30 Total: -60.32 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -1.01 Total: -18.71 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.64 Total: 49.50 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.32 Total: 1.44 kcal Total: -69.77 3.97 -65.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309088431.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.445 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds