Wall clock time and date at job start Mon Mar 30 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33385 * 125.20619 * 2 1 4 4 C 1.38423 * 114.92555 * 180.02562 * 3 2 1 5 5 C 1.33390 * 114.91949 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.19995 * 179.97438 * 5 4 3 7 7 H 1.08997 * 110.67758 * 337.03090 * 6 5 4 8 8 C 1.54998 * 110.61941 * 100.00267 * 6 5 4 9 9 C 1.54817 * 102.12466 * 155.53916 * 8 6 5 10 10 C 1.54100 * 104.18606 * 339.09929 * 9 8 6 11 11 C 1.53005 * 109.87705 * 117.39548 * 10 9 8 12 12 C 1.50695 * 109.87716 * 238.54566 * 10 9 8 13 13 H 1.07993 * 120.00473 * 0.02562 * 12 10 9 14 14 C 1.37886 * 119.99891 * 180.02562 * 12 10 9 15 15 N 1.31507 * 119.99917 * 180.02562 * 14 12 10 16 16 Si 1.86801 * 119.99904 * 359.97438 * 14 12 10 17 17 H 1.48496 * 109.47083 * 90.00021 * 16 14 12 18 18 H 1.48496 * 109.47205 * 210.00374 * 16 14 12 19 19 H 1.48501 * 109.47076 * 330.00298 * 16 14 12 20 20 O 1.43746 * 107.29659 * 357.97343 * 10 9 8 21 21 S 1.75882 * 109.59206 * 0.24291 * 5 4 3 22 22 H 1.08992 * 109.47265 * 90.00141 * 1 2 3 23 23 H 1.09000 * 109.46855 * 209.99660 * 1 2 3 24 24 H 1.08996 * 109.47043 * 329.99875 * 1 2 3 25 25 H 1.08004 * 122.53778 * 0.02562 * 3 2 1 26 26 H 1.08002 * 122.54065 * 179.97438 * 4 3 2 27 27 H 1.09002 * 110.90913 * 37.32131 * 8 6 5 28 28 H 1.08997 * 110.90321 * 273.75248 * 8 6 5 29 29 H 1.08991 * 110.48506 * 97.77523 * 9 8 6 30 30 H 1.08998 * 110.48536 * 220.42234 * 9 8 6 31 31 H 1.09002 * 109.46966 * 59.99739 * 11 10 9 32 32 H 1.08999 * 109.47103 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.46741 * 300.00016 * 11 10 9 34 34 H 0.96999 * 119.99944 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3861 -0.9770 -0.0016 7 1 6.0758 -0.2332 -0.4003 8 6 5.8099 -1.4042 1.4268 9 6 6.9185 -2.4459 1.1392 10 6 6.6473 -2.8957 -0.3095 11 6 7.8363 -2.5281 -1.1996 12 6 6.4151 -4.3842 -0.3489 13 1 6.4544 -4.9612 0.5631 14 6 6.1525 -5.0094 -1.5495 15 7 5.9493 -6.3083 -1.5838 16 14 6.0839 -4.0113 -3.1270 17 1 7.4368 -3.9551 -3.7364 18 1 5.1391 -4.6514 -4.0771 19 1 5.6211 -2.6337 -2.8213 20 8 5.4691 -2.2051 -0.7580 21 16 2.5210 -1.4372 -0.0067 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.8669 2.0894 0.0004 26 1 4.3721 1.6350 -0.0010 27 1 4.9759 -1.8608 1.9599 28 1 6.2080 -0.5564 1.9843 29 1 7.9035 -1.9862 1.2179 30 1 6.8349 -3.2906 1.8230 31 1 8.7336 -3.0249 -0.8306 32 1 7.6378 -2.8494 -2.2220 33 1 7.9846 -1.4484 -1.1799 34 1 5.7650 -6.7482 -2.4284 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309134821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:15 Heat of formation + Delta-G solvation = -10.301335 kcal Electronic energy + Delta-G solvation = -16746.485576 eV Core-core repulsion = 14157.218504 eV Total energy + Delta-G solvation = -2589.267073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99644 -37.48887 -33.25573 -32.01162 -31.28264 -30.26025 -27.25988 -25.30192 -23.91615 -22.61726 -21.05952 -19.47225 -18.66316 -16.83878 -16.71458 -15.26393 -15.11681 -14.61379 -13.88850 -13.80096 -13.43343 -13.11480 -12.89627 -12.60698 -12.34921 -12.15092 -12.03507 -11.98731 -11.38576 -11.20268 -10.93017 -10.69509 -10.43093 -10.23872 -10.03439 -9.86510 -9.73193 -9.02801 -8.55260 -8.41438 -8.10113 -8.07123 -6.10678 -4.18454 1.27532 1.95564 2.43658 2.96018 3.36269 3.48074 3.69566 4.52137 4.65198 5.01235 5.19495 5.32871 5.38018 5.40304 5.53628 5.56139 5.66340 5.76822 5.87735 5.96022 6.07324 6.10382 6.23537 6.34787 6.40521 6.52971 6.55410 6.61106 6.65023 6.77785 6.85759 7.19939 7.66404 8.16481 8.44880 8.89819 9.53918 10.99848 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.025768 B = 0.007941 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.351883 B = 3525.201774 C = 3976.661816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.211 4.211 3 C -0.141 4.141 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.130 3.870 7 H 0.072 0.928 8 C -0.139 4.139 9 C -0.129 4.129 10 C 0.189 3.811 11 C -0.158 4.158 12 C -0.512 4.512 13 H 0.079 0.921 14 C 0.085 3.915 15 N -0.891 5.891 16 Si 0.877 3.123 17 H -0.288 1.288 18 H -0.302 1.302 19 H -0.225 1.225 20 O -0.357 6.357 21 S 0.157 5.843 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.032 0.968 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 14.019 3.850 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.329 4.329 3 C -0.171 4.171 4 C -0.181 4.181 5 C -0.271 4.271 6 C 0.070 3.930 7 H 0.090 0.910 8 C -0.178 4.178 9 C -0.167 4.167 10 C 0.151 3.849 11 C -0.215 4.215 12 C -0.549 4.549 13 H 0.097 0.903 14 C -0.119 4.119 15 N -0.528 5.528 16 Si 0.707 3.293 17 H -0.216 1.216 18 H -0.230 1.230 19 H -0.148 1.148 20 O -0.278 6.278 21 S 0.422 5.578 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.149 0.851 26 H 0.151 0.849 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.128 12.226 3.586 14.138 hybrid contribution 0.499 1.968 -0.821 2.190 sum -5.629 14.195 2.765 15.519 Atomic orbital electron populations 1.20250 0.88349 1.02634 1.02346 1.24686 1.00030 0.97415 1.10785 1.19891 0.92751 0.98769 1.05726 1.19891 0.96119 0.95497 1.06621 1.24544 0.98658 0.96334 1.07611 1.21330 0.88694 0.90657 0.92339 0.91039 1.23100 0.99571 0.98791 0.96299 1.22890 0.96877 0.97987 0.98947 1.20128 0.82571 0.93165 0.88988 1.22477 0.99952 0.98388 1.00663 1.20939 1.50363 0.87916 0.95639 0.90251 1.25039 0.92703 0.94594 0.99583 1.69906 1.46809 1.09118 1.26945 0.87072 0.76625 0.83391 0.82179 1.21574 1.23004 1.14823 1.89393 1.47796 1.30038 1.60560 1.84786 0.95037 1.06984 1.70951 0.91158 0.91523 0.91091 0.85135 0.84872 0.90969 0.91570 0.92345 0.90597 0.92018 0.93486 0.94932 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.38 36.01 0.37 -0.45 16 2 C -0.21 -3.01 6.51 -36.00 -0.23 -3.25 16 3 C -0.14 -1.94 10.05 -41.21 -0.41 -2.35 16 4 C -0.15 -2.27 10.05 -41.21 -0.41 -2.69 16 5 C -0.15 -2.71 5.59 -36.00 -0.20 -2.91 16 6 C 0.13 2.46 3.73 -26.83 -0.10 2.36 16 7 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 8 C -0.14 -2.43 6.57 -24.72 -0.16 -2.59 16 9 C -0.13 -2.52 6.26 -25.20 -0.16 -2.68 16 10 C 0.19 4.43 0.69 -91.20 -0.06 4.36 16 11 C -0.16 -3.42 8.09 37.16 0.30 -3.12 16 12 C -0.51 -14.37 8.87 -34.44 -0.31 -14.68 16 13 H 0.08 2.38 7.58 -52.49 -0.40 1.98 16 14 C 0.09 2.49 5.45 -17.82 -0.10 2.39 16 15 N -0.89 -27.42 13.96 55.43 0.77 -26.65 16 16 Si 0.88 22.76 23.91 -169.99 -4.07 18.70 16 17 H -0.29 -7.26 6.87 56.52 0.39 -6.87 16 18 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 19 H -0.22 -5.72 5.39 56.52 0.30 -5.42 16 20 O -0.36 -8.43 7.41 -35.23 -0.26 -8.69 16 21 S 0.16 2.76 23.06 -107.50 -2.48 0.28 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 26 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.00 7.69 -51.93 -0.40 0.60 16 30 H 0.08 1.53 7.40 -51.93 -0.38 1.15 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 1.10 3.17 -51.93 -0.16 0.93 16 33 H 0.03 0.61 8.11 -51.93 -0.42 0.18 16 34 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 285.21 15.07 4.30 4.30 Total: -1.00 -31.15 285.21 -8.02 -39.17 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.81 Total: -1.50 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -1.48 Total: -25.61 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.26 Total: -8.69 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.07 Total: 18.70 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.48 Total: 0.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.15 -8.02 -39.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309134821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.870 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds