Wall clock time and date at job start Mon Mar 30 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33388 * 125.20354 * 2 1 4 4 C 1.38424 * 114.91952 * 179.79056 * 3 2 1 5 5 C 1.33388 * 114.92159 * 0.43247 * 4 3 2 6 6 C 1.50702 * 125.20153 * 179.85847 * 5 4 3 7 7 H 1.08997 * 110.67531 * 341.22860 * 6 5 4 8 8 C 1.54992 * 110.61787 * 104.19384 * 6 5 4 9 9 C 1.55153 * 102.14559 * 155.47054 * 8 6 5 10 10 C 1.54101 * 104.02610 * 339.21473 * 9 8 6 11 11 C 1.52997 * 109.88069 * 238.36299 * 10 9 8 12 12 C 1.50695 * 109.87663 * 117.36274 * 10 9 8 13 13 H 1.08009 * 120.00341 * 6.43259 * 12 10 9 14 14 C 1.37882 * 120.00103 * 186.43624 * 12 10 9 15 15 N 1.31515 * 120.00037 * 198.31126 * 14 12 10 16 16 Si 1.86801 * 119.99882 * 18.31387 * 14 12 10 17 17 H 1.48500 * 109.47008 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.46795 * 299.99777 * 16 14 12 19 19 H 1.48496 * 109.47174 * 59.99647 * 16 14 12 20 20 O 1.43747 * 107.42159 * 357.86118 * 10 9 8 21 21 S 1.75883 * 125.20122 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47277 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47001 * 300.00171 * 1 2 3 24 24 H 1.09005 * 109.47125 * 60.00236 * 1 2 3 25 25 H 1.07999 * 122.53947 * 0.02562 * 3 2 1 26 26 H 1.08001 * 122.53870 * 180.27055 * 4 3 2 27 27 H 1.08990 * 110.90965 * 273.71872 * 8 6 5 28 28 H 1.09003 * 110.90675 * 37.29335 * 8 6 5 29 29 H 1.09000 * 110.58859 * 220.58183 * 9 8 6 30 30 H 1.08999 * 110.53499 * 97.82692 * 9 8 6 31 31 H 1.09006 * 109.47219 * 305.57569 * 11 10 9 32 32 H 1.08999 * 109.47194 * 65.57022 * 11 10 9 33 33 H 1.09004 * 109.47177 * 185.57534 * 11 10 9 34 34 H 0.96998 * 120.00384 * 355.59376 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0046 5 6 3.9751 -0.4478 -0.0008 6 6 5.3861 -0.9771 -0.0006 7 1 6.0862 -0.2067 -0.3237 8 6 5.7694 -1.5084 1.4041 9 6 6.8880 -2.5311 1.0722 10 6 6.6566 -2.8687 -0.4135 11 6 6.4245 -4.3722 -0.5753 12 6 7.8517 -2.4444 -1.2275 13 1 8.7384 -2.0754 -0.7333 14 6 7.8133 -2.5271 -2.6033 15 7 8.9320 -2.5108 -3.2946 16 14 6.1722 -2.6623 -3.4854 17 1 6.4024 -2.7372 -4.9505 18 1 5.4663 -3.8878 -3.0324 19 1 5.3433 -1.4701 -3.1743 20 8 5.4910 -2.1452 -0.8427 21 16 2.5209 -1.4372 -0.0006 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8669 2.0894 0.0004 26 1 4.3721 1.6350 0.0094 27 1 6.1512 -0.7045 2.0332 28 1 4.9208 -2.0016 1.8783 29 1 6.7848 -3.4251 1.6871 30 1 7.8710 -2.0815 1.2127 31 1 7.2536 -4.9184 -0.1253 32 1 5.4943 -4.6516 -0.0805 33 1 6.3602 -4.6180 -1.6354 34 1 9.7796 -2.3764 -2.8425 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309134824.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:17 Heat of formation + Delta-G solvation = -21.382731 kcal Electronic energy + Delta-G solvation = -16795.688837 eV Core-core repulsion = 14205.941239 eV Total energy + Delta-G solvation = -2589.747598 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.95147 -37.51103 -33.25595 -32.05104 -31.31918 -30.25527 -27.12996 -24.82710 -23.85231 -22.59917 -21.13396 -19.36775 -18.59865 -17.42917 -16.70641 -15.48035 -15.09666 -14.08469 -13.90172 -13.79912 -13.51620 -13.16868 -12.99029 -12.52539 -12.21025 -12.17594 -11.96038 -11.70911 -11.34655 -11.20220 -11.02091 -10.64988 -10.42177 -10.17681 -10.04742 -9.95235 -9.55165 -9.01604 -8.49418 -8.19675 -8.16804 -8.05505 -6.43597 -4.17145 1.22733 1.87987 2.33281 2.94374 3.60831 3.67143 3.91191 4.63196 4.71954 4.96254 5.21228 5.26574 5.33121 5.41510 5.47652 5.58920 5.67776 5.78717 5.90713 5.99969 6.10490 6.14277 6.33712 6.37955 6.49218 6.54161 6.58793 6.63448 6.73831 6.81322 6.94816 7.38887 7.91865 8.12564 8.36076 8.89810 9.59546 10.92728 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.007793 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.930981 B = 3592.187838 C = 3903.116099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.205 4.205 3 C -0.137 4.137 4 C -0.146 4.146 5 C -0.150 4.150 6 C 0.153 3.847 7 H 0.085 0.915 8 C -0.141 4.141 9 C -0.131 4.131 10 C 0.192 3.808 11 C -0.135 4.135 12 C -0.617 4.617 13 H 0.058 0.942 14 C 0.044 3.956 15 N -0.898 5.898 16 Si 1.071 2.929 17 H -0.308 1.308 18 H -0.278 1.278 19 H -0.279 1.279 20 O -0.377 6.377 21 S 0.127 5.873 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.773 4.323 8.799 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.322 4.322 3 C -0.168 4.168 4 C -0.175 4.175 5 C -0.268 4.268 6 C 0.093 3.907 7 H 0.103 0.897 8 C -0.179 4.179 9 C -0.169 4.169 10 C 0.155 3.845 11 C -0.192 4.192 12 C -0.654 4.654 13 H 0.077 0.923 14 C -0.163 4.163 15 N -0.531 5.531 16 Si 0.903 3.097 17 H -0.237 1.237 18 H -0.205 1.205 19 H -0.205 1.205 20 O -0.298 6.298 21 S 0.391 5.609 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.151 0.849 26 H 0.155 0.845 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.860 2.509 7.155 16.683 hybrid contribution 1.344 1.900 1.680 2.870 sum -13.516 4.409 8.835 16.738 Atomic orbital electron populations 1.20247 0.88276 1.02530 1.02430 1.24560 0.99812 0.96762 1.11073 1.19915 0.92762 0.98925 1.05194 1.19975 0.96180 0.95717 1.05664 1.24604 0.98353 0.96327 1.07490 1.21129 0.88346 0.91037 0.90173 0.89714 1.23149 0.99086 0.99112 0.96597 1.22994 0.98176 0.97669 0.98072 1.20185 0.84435 0.89360 0.90544 1.22092 0.98778 0.96258 1.02110 1.22229 0.99216 1.50439 0.93538 0.92338 1.25899 1.03564 0.91705 0.95113 1.70934 0.98559 1.43546 1.40055 0.83598 0.74486 0.78276 0.73350 1.23720 1.20498 1.20517 1.88710 1.49477 1.35243 1.56374 1.84329 0.95868 1.08511 1.72151 0.91722 0.91035 0.90965 0.84881 0.84510 0.91272 0.91580 0.92407 0.91251 0.92641 0.95072 0.92204 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.38 36.01 0.37 -0.38 16 2 C -0.20 -2.80 6.51 -36.00 -0.23 -3.04 16 3 C -0.14 -1.89 10.05 -41.21 -0.41 -2.31 16 4 C -0.15 -2.28 10.05 -41.21 -0.41 -2.70 16 5 C -0.15 -2.69 5.55 -36.00 -0.20 -2.89 16 6 C 0.15 3.08 3.72 -26.83 -0.10 2.98 16 7 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 8 C -0.14 -2.50 6.58 -24.54 -0.16 -2.66 16 9 C -0.13 -2.62 6.29 -25.02 -0.16 -2.78 16 10 C 0.19 4.57 0.70 -91.20 -0.06 4.50 16 11 C -0.13 -3.03 8.35 37.16 0.31 -2.72 16 12 C -0.62 -17.24 8.57 -34.44 -0.30 -17.54 16 13 H 0.06 1.73 7.59 -52.48 -0.40 1.34 16 14 C 0.04 1.29 5.29 -17.82 -0.09 1.20 16 15 N -0.90 -27.84 13.70 55.43 0.76 -27.09 16 16 Si 1.07 28.16 24.80 -169.99 -4.22 23.94 16 17 H -0.31 -8.18 7.11 56.52 0.40 -7.77 16 18 H -0.28 -6.93 5.79 56.52 0.33 -6.60 16 19 H -0.28 -7.28 6.88 56.52 0.39 -6.89 16 20 O -0.38 -8.89 6.72 -35.23 -0.24 -9.13 16 21 S 0.13 2.06 23.14 -107.50 -2.49 -0.42 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 26 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 29 H 0.06 1.04 7.70 -51.93 -0.40 0.65 16 30 H 0.07 1.42 7.40 -51.93 -0.38 1.04 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.44 4.97 -51.93 -0.26 1.18 16 34 H 0.27 8.13 8.73 -40.82 -0.36 7.78 16 LS Contribution 287.72 15.07 4.34 4.34 Total: -1.00 -31.02 287.72 -8.20 -39.22 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.90 Total: -2.53 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -1.45 Total: -28.33 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.76 Total: -27.09 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.24 Total: -9.13 kcal Atomic # 14 Polarization: 28.16 SS G_CDS: -4.22 Total: 23.94 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.49 Total: -0.42 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.02 -8.20 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309134824.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.834 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds