Wall clock time and date at job start Mon Mar 30 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33388 * 125.20354 * 2 1 4 4 C 1.38424 * 114.91952 * 179.79056 * 3 2 1 5 5 C 1.33388 * 114.92159 * 0.43247 * 4 3 2 6 6 C 1.50702 * 125.20153 * 179.85847 * 5 4 3 7 7 H 1.08997 * 110.67531 * 341.22860 * 6 5 4 8 8 C 1.54992 * 110.61787 * 104.19384 * 6 5 4 9 9 C 1.55153 * 102.14559 * 155.47054 * 8 6 5 10 10 C 1.54101 * 104.02610 * 339.21473 * 9 8 6 11 11 C 1.52997 * 109.88069 * 238.36299 * 10 9 8 12 12 C 1.50695 * 109.87663 * 117.36274 * 10 9 8 13 13 H 1.08009 * 120.00341 * 6.43259 * 12 10 9 14 14 C 1.37882 * 120.00103 * 186.43624 * 12 10 9 15 15 N 1.31515 * 120.00037 * 198.31126 * 14 12 10 16 16 Si 1.86801 * 119.99882 * 18.31387 * 14 12 10 17 17 H 1.48500 * 109.47008 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.46795 * 299.99777 * 16 14 12 19 19 H 1.48496 * 109.47174 * 59.99647 * 16 14 12 20 20 O 1.43747 * 107.42159 * 357.86118 * 10 9 8 21 21 S 1.75883 * 125.20122 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47277 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47001 * 300.00171 * 1 2 3 24 24 H 1.09005 * 109.47125 * 60.00236 * 1 2 3 25 25 H 1.07999 * 122.53947 * 0.02562 * 3 2 1 26 26 H 1.08001 * 122.53870 * 180.27055 * 4 3 2 27 27 H 1.08990 * 110.90965 * 273.71872 * 8 6 5 28 28 H 1.09003 * 110.90675 * 37.29335 * 8 6 5 29 29 H 1.09000 * 110.58859 * 220.58183 * 9 8 6 30 30 H 1.08999 * 110.53499 * 97.82692 * 9 8 6 31 31 H 1.09006 * 109.47219 * 305.57569 * 11 10 9 32 32 H 1.08999 * 109.47194 * 65.57022 * 11 10 9 33 33 H 1.09004 * 109.47177 * 185.57534 * 11 10 9 34 34 H 0.96998 * 120.00384 * 355.59376 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0046 5 6 3.9751 -0.4478 -0.0008 6 6 5.3861 -0.9771 -0.0006 7 1 6.0862 -0.2067 -0.3237 8 6 5.7694 -1.5084 1.4041 9 6 6.8880 -2.5311 1.0722 10 6 6.6566 -2.8687 -0.4135 11 6 6.4245 -4.3722 -0.5753 12 6 7.8517 -2.4444 -1.2275 13 1 8.7384 -2.0754 -0.7333 14 6 7.8133 -2.5271 -2.6033 15 7 8.9320 -2.5108 -3.2946 16 14 6.1722 -2.6623 -3.4854 17 1 6.4024 -2.7372 -4.9505 18 1 5.4663 -3.8878 -3.0324 19 1 5.3433 -1.4701 -3.1743 20 8 5.4910 -2.1452 -0.8427 21 16 2.5209 -1.4372 -0.0006 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8669 2.0894 0.0004 26 1 4.3721 1.6350 0.0094 27 1 6.1512 -0.7045 2.0332 28 1 4.9208 -2.0016 1.8783 29 1 6.7848 -3.4251 1.6871 30 1 7.8710 -2.0815 1.2127 31 1 7.2536 -4.9184 -0.1253 32 1 5.4943 -4.6516 -0.0805 33 1 6.3602 -4.6180 -1.6354 34 1 9.7796 -2.3764 -2.8425 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309134824.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:17 Heat of formation + Delta-G solvation = -39.720142 kcal Electronic energy + Delta-G solvation = -16796.484006 eV Core-core repulsion = 14205.941239 eV Total energy + Delta-G solvation = -2590.542768 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60259 -38.70955 -35.18243 -33.54972 -33.03851 -31.71626 -28.41884 -26.87619 -25.28013 -23.80979 -22.64673 -21.20862 -19.82656 -19.54376 -18.03571 -16.97720 -16.46595 -15.87912 -15.52154 -15.25884 -14.96384 -14.68606 -14.37753 -13.96392 -13.79988 -13.51286 -13.30292 -13.16915 -12.81733 -12.72391 -12.49639 -12.11879 -12.05118 -11.99250 -11.67326 -11.59974 -11.41396 -10.99899 -10.57273 -10.20437 -9.37247 -9.31492 -8.73640 -6.47340 0.05752 0.70723 1.16077 1.48172 1.54950 1.78103 1.86065 2.46559 2.95593 3.30374 3.76259 3.85329 4.02496 4.16881 4.33685 4.44860 4.50820 4.59756 4.65953 4.75495 4.80098 4.80616 4.85170 4.92865 4.97612 5.13668 5.15310 5.21470 5.28411 5.40090 5.59677 5.65833 5.86697 6.01710 6.27987 6.64488 7.35267 8.60371 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.007793 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.930981 B = 3592.187838 C = 3903.116099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.185 4.185 3 C -0.148 4.148 4 C -0.136 4.136 5 C -0.189 4.189 6 C 0.146 3.854 7 H 0.062 0.938 8 C -0.127 4.127 9 C -0.129 4.129 10 C 0.183 3.817 11 C -0.134 4.134 12 C -0.610 4.610 13 H 0.028 0.972 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 1.106 2.894 17 H -0.315 1.315 18 H -0.256 1.256 19 H -0.280 1.280 20 O -0.391 6.391 21 S 0.098 5.902 22 H 0.070 0.930 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.165 0.835 26 H 0.147 0.853 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.861 4.900 10.266 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.302 4.302 3 C -0.178 4.178 4 C -0.166 4.166 5 C -0.307 4.307 6 C 0.087 3.913 7 H 0.079 0.921 8 C -0.165 4.165 9 C -0.167 4.167 10 C 0.145 3.855 11 C -0.191 4.191 12 C -0.648 4.648 13 H 0.046 0.954 14 C -0.200 4.200 15 N -0.569 5.569 16 Si 0.934 3.066 17 H -0.245 1.245 18 H -0.181 1.181 19 H -0.206 1.206 20 O -0.312 6.312 21 S 0.362 5.638 22 H 0.089 0.911 23 H 0.112 0.888 24 H 0.107 0.893 25 H 0.183 0.817 26 H 0.165 0.835 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.950 3.083 8.648 20.162 hybrid contribution 2.265 1.829 1.289 3.184 sum -15.685 4.912 9.937 19.207 Atomic orbital electron populations 1.20426 0.85402 1.03578 1.04246 1.25056 1.01431 0.95107 1.08645 1.20206 0.91780 1.00520 1.05280 1.20308 0.97635 0.95217 1.03448 1.24379 0.97583 0.97395 1.11305 1.21181 0.89861 0.89437 0.90829 0.92068 1.23089 0.98634 0.99040 0.95694 1.22912 0.98465 0.99388 0.95914 1.20164 0.83064 0.90151 0.92122 1.22041 1.00610 0.95245 1.01228 1.22486 0.99995 1.48565 0.93739 0.95355 1.26860 1.04987 0.91702 0.96470 1.71014 0.98717 1.46811 1.40361 0.83128 0.72164 0.79130 0.72190 1.24464 1.18149 1.20611 1.88633 1.48445 1.36436 1.57728 1.84327 0.96143 1.10364 1.72980 0.91147 0.88763 0.89345 0.81735 0.83521 0.89110 0.89961 0.90014 0.92540 0.91787 0.92303 0.94182 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.38 71.24 0.74 -0.47 16 2 C -0.18 -4.42 6.51 24.59 0.16 -4.26 16 3 C -0.15 -3.57 10.05 21.22 0.21 -3.35 16 4 C -0.14 -3.95 10.05 21.22 0.21 -3.74 16 5 C -0.19 -6.50 5.55 24.59 0.14 -6.36 16 6 C 0.15 5.78 3.72 30.53 0.11 5.89 16 7 H 0.06 2.63 8.14 -2.39 -0.02 2.62 16 8 C -0.13 -4.24 6.58 32.01 0.21 -4.03 16 9 C -0.13 -4.98 6.29 31.70 0.20 -4.78 16 10 C 0.18 8.59 0.70 -11.17 -0.01 8.58 16 11 C -0.13 -5.82 8.35 71.98 0.60 -5.21 16 12 C -0.61 -34.88 8.57 25.60 0.22 -34.66 16 13 H 0.03 1.75 7.59 -2.91 -0.02 1.73 16 14 C 0.00 0.02 5.29 84.66 0.45 0.46 16 15 N -0.93 -59.85 13.70 21.45 0.29 -59.56 16 16 Si 1.11 57.78 24.80 68.60 1.70 59.48 16 17 H -0.31 -16.63 7.11 99.48 0.71 -15.92 16 18 H -0.26 -12.36 5.79 99.48 0.58 -11.78 16 19 H -0.28 -14.47 6.88 99.48 0.68 -13.79 16 20 O -0.39 -18.15 6.72 -148.98 -1.00 -19.15 16 21 S 0.10 2.97 23.14 -56.49 -1.31 1.66 16 22 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 26 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.08 2.50 8.05 -2.39 -0.02 2.48 16 29 H 0.08 2.75 7.70 -2.39 -0.02 2.73 16 30 H 0.06 2.30 7.40 -2.39 -0.02 2.28 16 31 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.04 1.87 4.97 -2.39 -0.01 1.86 16 34 H 0.26 16.34 8.73 -92.71 -0.81 15.53 16 Total: -1.00 -68.28 287.72 3.82 -64.46 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 0.89 Total: 5.04 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 3.25 Total: -51.94 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.29 Total: -59.56 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -1.00 Total: -19.15 kcal Atomic # 14 Polarization: 57.78 SS G_CDS: 1.70 Total: 59.48 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.31 Total: 1.66 kcal Total: -68.28 3.82 -64.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309134824.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.737 kcal (2) G-P(sol) polarization free energy of solvation -68.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds