Wall clock time and date at job start Mon Mar 30 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38426 * 122.54159 * 2 1 4 4 C 1.33387 * 114.92203 * 180.27011 * 3 2 1 5 5 S 1.75885 * 109.59285 * 359.77855 * 4 3 2 6 6 C 1.33388 * 122.53877 * 179.83351 * 2 1 3 7 7 C 1.50699 * 125.20341 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.48903 * 14.69048 * 7 6 2 9 9 C 1.53092 * 109.48159 * 254.65986 * 7 6 2 10 10 C 1.53175 * 109.16344 * 182.40725 * 9 7 6 11 11 C 1.53180 * 109.03606 * 56.98567 * 10 9 7 12 12 C 1.53098 * 109.16075 * 303.01560 * 11 10 9 13 13 H 1.08993 * 109.47885 * 177.58982 * 12 11 10 14 14 C 1.50700 * 109.47907 * 297.62884 * 12 11 10 15 15 H 1.07994 * 120.00245 * 359.94000 * 14 12 11 16 16 C 1.37882 * 119.99780 * 179.97438 * 14 12 11 17 17 N 1.31519 * 119.99715 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00051 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46982 * 90.00227 * 18 16 14 20 20 H 1.48496 * 109.47299 * 210.00251 * 18 16 14 21 21 H 1.48501 * 109.47128 * 330.00563 * 18 16 14 22 22 O 1.42905 * 109.41155 * 57.61062 * 12 11 10 23 23 H 1.08995 * 109.46726 * 270.16754 * 1 2 3 24 24 H 1.08995 * 109.47054 * 30.16544 * 1 2 3 25 25 H 1.08999 * 109.47363 * 150.16607 * 1 2 3 26 26 H 1.08002 * 122.53966 * 0.05214 * 3 2 1 27 27 H 1.08006 * 125.20568 * 179.75146 * 4 3 2 28 28 H 1.09004 * 109.52333 * 302.31940 * 9 7 6 29 29 H 1.08998 * 109.51897 * 62.50104 * 9 7 6 30 30 H 1.09005 * 109.54265 * 176.84854 * 10 9 7 31 31 H 1.08996 * 109.54473 * 297.02360 * 10 9 7 32 32 H 1.08996 * 109.52502 * 62.92172 * 11 10 9 33 33 H 1.08995 * 109.52068 * 183.05420 * 11 10 9 34 34 H 0.96998 * 119.99677 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9386 -0.7305 -0.0051 6 6 2.2244 -1.1245 0.0033 7 6 1.6536 -2.5192 0.0068 8 1 0.5961 -2.4800 -0.2543 9 6 1.8131 -3.1326 1.4003 10 6 1.2856 -4.5706 1.3801 11 6 2.0374 -5.3634 0.3065 12 6 1.8693 -4.6639 -1.0449 13 1 2.4375 -5.2000 -1.8049 14 6 0.4111 -4.6484 -1.4248 15 1 -0.3225 -5.0937 -0.7691 16 6 0.0135 -4.0665 -2.6099 17 7 0.9070 -3.5244 -3.4084 18 14 -1.7939 -4.0479 -3.0812 19 1 -2.4312 -2.8161 -2.5505 20 1 -1.9199 -4.0725 -4.5606 21 1 -2.4674 -5.2404 -2.5071 22 8 2.3508 -3.3219 -0.9481 23 1 -0.3632 0.0030 1.0276 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3634 -0.8914 -0.5112 26 1 1.7965 2.1464 0.0008 27 1 4.3078 1.7822 -0.0104 28 1 2.8669 -3.1350 1.6789 29 1 1.2457 -2.5466 2.1233 30 1 1.4473 -5.0320 2.3543 31 1 0.2199 -4.5648 1.1518 32 1 3.0957 -5.4109 0.5629 33 1 1.6311 -6.3731 0.2480 34 1 0.6274 -3.1153 -4.2423 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379828843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:32 Heat of formation + Delta-G solvation = -28.307611 kcal Electronic energy + Delta-G solvation = -17163.157641 eV Core-core repulsion = 14573.109758 eV Total energy + Delta-G solvation = -2590.047883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.65163 -37.31758 -32.72518 -32.35786 -31.29100 -29.57456 -26.95310 -25.36920 -23.26914 -22.30077 -21.54418 -19.08256 -17.79633 -17.00881 -16.08662 -14.97020 -14.70193 -14.45455 -14.09517 -13.76490 -13.37272 -13.10236 -12.71657 -12.46904 -11.81763 -11.73085 -11.60378 -11.46138 -11.25386 -11.16390 -10.91653 -10.62990 -10.43030 -10.22011 -10.15663 -9.79851 -9.58714 -8.78796 -8.49598 -8.13117 -7.79903 -7.71271 -5.99953 -4.15919 1.53021 2.20763 2.61533 3.16644 3.26023 3.34429 3.36450 4.38523 4.99445 5.31736 5.33662 5.62655 5.70426 5.77513 5.84666 5.85143 5.92345 6.05589 6.19376 6.26106 6.30633 6.42243 6.46740 6.51237 6.64526 6.83936 6.93200 6.98738 7.00889 7.04630 7.17208 7.67371 7.85640 8.19286 8.79488 9.04383 9.56335 11.04044 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.009446 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.216698 B = 2963.476140 C = 3538.483539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.125 4.125 3 C -0.125 4.125 4 C -0.242 4.242 5 S 0.113 5.887 6 C -0.131 4.131 7 C 0.169 3.831 8 H 0.085 0.915 9 C -0.137 4.137 10 C -0.108 4.108 11 C -0.143 4.143 12 C 0.212 3.788 13 H 0.063 0.937 14 C -0.561 4.561 15 H 0.058 0.942 16 C 0.080 3.920 17 N -0.855 5.855 18 Si 0.880 3.120 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 O -0.365 6.365 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.156 0.844 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 6.087 7.916 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C -0.157 4.157 4 C -0.377 4.377 5 S 0.378 5.622 6 C -0.248 4.248 7 C 0.108 3.892 8 H 0.102 0.898 9 C -0.176 4.176 10 C -0.145 4.145 11 C -0.181 4.181 12 C 0.157 3.843 13 H 0.080 0.920 14 C -0.599 4.599 15 H 0.076 0.924 16 C -0.126 4.126 17 N -0.490 5.490 18 Si 0.707 3.293 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 O -0.284 6.284 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.149 0.851 27 H 0.173 0.827 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.583 5.404 7.616 10.002 hybrid contribution -2.445 0.883 -0.277 2.614 sum 1.138 6.286 7.339 9.730 Atomic orbital electron populations 1.20504 0.90205 1.02939 1.01540 1.18725 0.97298 0.91453 1.06130 1.19914 0.92901 0.98697 1.04167 1.25506 0.99588 0.99841 1.12780 1.84196 1.07266 0.98592 1.72127 1.24472 0.95149 0.98892 1.06319 1.19966 0.97055 0.83731 0.88407 0.89760 1.22145 1.00605 0.97040 0.97783 1.21441 1.01137 0.94530 0.97429 1.22191 0.97958 0.99341 0.98583 1.19733 0.94804 0.79466 0.90339 0.91985 1.21527 0.93067 1.39954 1.05314 0.92407 1.25029 0.96892 0.94593 0.96084 1.70058 1.32890 1.35224 1.10847 0.86808 0.86090 0.78572 0.77851 1.20461 1.21113 1.19797 1.87965 1.57894 1.24500 1.58086 0.91937 0.92204 0.90731 0.85141 0.82686 0.92606 0.92554 0.93867 0.91187 0.94031 0.92430 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.82 36.00 0.35 -1.17 16 2 C -0.12 -2.27 5.80 -106.25 -0.62 -2.89 16 3 C -0.13 -1.99 9.98 -41.21 -0.41 -2.40 16 4 C -0.24 -3.73 11.23 29.04 0.33 -3.40 16 5 S 0.11 2.02 23.21 -107.50 -2.50 -0.48 16 6 C -0.13 -2.63 5.44 -36.00 -0.20 -2.83 16 7 C 0.17 3.70 2.65 -27.84 -0.07 3.63 16 8 H 0.08 2.03 5.22 -51.93 -0.27 1.76 16 9 C -0.14 -2.61 5.40 -26.59 -0.14 -2.75 16 10 C -0.11 -2.04 5.77 -26.55 -0.15 -2.19 16 11 C -0.14 -2.97 5.59 -26.59 -0.15 -3.12 16 12 C 0.21 5.32 3.16 -27.83 -0.09 5.23 16 13 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 14 C -0.56 -14.82 6.59 -34.44 -0.23 -15.05 16 15 H 0.06 1.50 6.87 -52.49 -0.36 1.14 16 16 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 17 N -0.85 -24.66 12.84 55.43 0.71 -23.95 16 18 Si 0.88 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 O -0.37 -9.26 9.52 -35.23 -0.34 -9.60 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 25 H 0.07 1.40 6.50 -51.93 -0.34 1.06 16 26 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.39 6.86 -51.93 -0.36 1.03 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 288.27 15.07 4.34 4.34 Total: -1.00 -28.88 288.27 -8.96 -37.84 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.69 Total: 0.97 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -1.47 Total: -24.85 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.71 Total: -23.95 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.34 Total: -9.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.50 Total: -0.48 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.88 -8.96 -37.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379828843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.531 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds