Wall clock time and date at job start Mon Mar 30 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38426 * 122.54159 * 2 1 4 4 C 1.33387 * 114.92203 * 180.27011 * 3 2 1 5 5 S 1.75885 * 109.59285 * 359.77855 * 4 3 2 6 6 C 1.33388 * 122.53877 * 179.83351 * 2 1 3 7 7 C 1.50699 * 125.20341 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.48903 * 14.69048 * 7 6 2 9 9 C 1.53092 * 109.48159 * 254.65986 * 7 6 2 10 10 C 1.53175 * 109.16344 * 182.40725 * 9 7 6 11 11 C 1.53180 * 109.03606 * 56.98567 * 10 9 7 12 12 C 1.53098 * 109.16075 * 303.01560 * 11 10 9 13 13 H 1.08993 * 109.47885 * 177.58982 * 12 11 10 14 14 C 1.50700 * 109.47907 * 297.62884 * 12 11 10 15 15 H 1.07994 * 120.00245 * 359.94000 * 14 12 11 16 16 C 1.37882 * 119.99780 * 179.97438 * 14 12 11 17 17 N 1.31519 * 119.99715 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00051 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46982 * 90.00227 * 18 16 14 20 20 H 1.48496 * 109.47299 * 210.00251 * 18 16 14 21 21 H 1.48501 * 109.47128 * 330.00563 * 18 16 14 22 22 O 1.42905 * 109.41155 * 57.61062 * 12 11 10 23 23 H 1.08995 * 109.46726 * 270.16754 * 1 2 3 24 24 H 1.08995 * 109.47054 * 30.16544 * 1 2 3 25 25 H 1.08999 * 109.47363 * 150.16607 * 1 2 3 26 26 H 1.08002 * 122.53966 * 0.05214 * 3 2 1 27 27 H 1.08006 * 125.20568 * 179.75146 * 4 3 2 28 28 H 1.09004 * 109.52333 * 302.31940 * 9 7 6 29 29 H 1.08998 * 109.51897 * 62.50104 * 9 7 6 30 30 H 1.09005 * 109.54265 * 176.84854 * 10 9 7 31 31 H 1.08996 * 109.54473 * 297.02360 * 10 9 7 32 32 H 1.08996 * 109.52502 * 62.92172 * 11 10 9 33 33 H 1.08995 * 109.52068 * 183.05420 * 11 10 9 34 34 H 0.96998 * 119.99677 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9386 -0.7305 -0.0051 6 6 2.2244 -1.1245 0.0033 7 6 1.6536 -2.5192 0.0068 8 1 0.5961 -2.4800 -0.2543 9 6 1.8131 -3.1326 1.4003 10 6 1.2856 -4.5706 1.3801 11 6 2.0374 -5.3634 0.3065 12 6 1.8693 -4.6639 -1.0449 13 1 2.4375 -5.2000 -1.8049 14 6 0.4111 -4.6484 -1.4248 15 1 -0.3225 -5.0937 -0.7691 16 6 0.0135 -4.0665 -2.6099 17 7 0.9070 -3.5244 -3.4084 18 14 -1.7939 -4.0479 -3.0812 19 1 -2.4312 -2.8161 -2.5505 20 1 -1.9199 -4.0725 -4.5606 21 1 -2.4674 -5.2404 -2.5071 22 8 2.3508 -3.3219 -0.9481 23 1 -0.3632 0.0030 1.0276 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3634 -0.8914 -0.5112 26 1 1.7965 2.1464 0.0008 27 1 4.3078 1.7822 -0.0104 28 1 2.8669 -3.1350 1.6789 29 1 1.2457 -2.5466 2.1233 30 1 1.4473 -5.0320 2.3543 31 1 0.2199 -4.5648 1.1518 32 1 3.0957 -5.4109 0.5629 33 1 1.6311 -6.3731 0.2480 34 1 0.6274 -3.1153 -4.2423 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379828843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:32 Heat of formation + Delta-G solvation = -44.035694 kcal Electronic energy + Delta-G solvation = -17163.839662 eV Core-core repulsion = 14573.109758 eV Total energy + Delta-G solvation = -2590.729904 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28337 -38.78831 -34.67729 -34.08306 -32.90917 -31.04910 -28.55168 -27.20690 -24.80922 -23.97307 -23.01025 -20.83373 -19.20037 -18.66966 -17.83586 -16.75001 -16.32215 -16.07713 -15.80267 -15.35269 -14.87119 -14.78968 -14.23289 -13.86889 -13.63252 -13.19905 -13.08397 -12.94543 -12.83614 -12.77405 -12.55226 -12.44244 -12.19746 -11.81700 -11.63720 -11.49545 -11.28620 -10.72700 -10.49091 -9.77778 -9.33084 -9.14273 -8.08241 -6.29773 0.18207 0.86076 1.27866 1.37853 1.39694 1.49017 1.85506 2.40143 3.12949 3.51994 4.04066 4.12005 4.18639 4.24629 4.43493 4.48747 4.59025 4.68980 4.69541 4.77146 4.82089 4.94618 5.03287 5.08620 5.19780 5.24423 5.27784 5.36471 5.48496 5.60823 5.68202 5.73879 5.81503 6.16120 6.76921 7.12588 7.47275 8.95952 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.009446 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.216698 B = 2963.476140 C = 3538.483539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.123 4.123 3 C -0.134 4.134 4 C -0.218 4.218 5 S 0.086 5.914 6 C -0.177 4.177 7 C 0.170 3.830 8 H 0.055 0.945 9 C -0.131 4.131 10 C -0.104 4.104 11 C -0.136 4.136 12 C 0.206 3.794 13 H 0.024 0.976 14 C -0.562 4.562 15 H 0.060 0.940 16 C 0.032 3.968 17 N -0.894 5.894 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.264 1.264 22 O -0.390 6.390 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.042 0.958 26 H 0.166 0.834 27 H 0.193 0.807 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 7.645 9.490 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C -0.165 4.165 4 C -0.354 4.354 5 S 0.351 5.649 6 C -0.294 4.294 7 C 0.111 3.889 8 H 0.073 0.927 9 C -0.169 4.169 10 C -0.141 4.141 11 C -0.174 4.174 12 C 0.150 3.850 13 H 0.042 0.958 14 C -0.599 4.599 15 H 0.078 0.922 16 C -0.171 4.171 17 N -0.532 5.532 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.188 1.188 22 O -0.310 6.310 23 H 0.103 0.897 24 H 0.100 0.900 25 H 0.061 0.939 26 H 0.183 0.817 27 H 0.210 0.790 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.950 6.948 9.209 11.908 hybrid contribution -2.202 0.466 -0.758 2.375 sum 0.748 7.414 8.451 11.268 Atomic orbital electron populations 1.20534 0.89376 1.02343 1.02828 1.19159 0.98242 0.91842 1.04258 1.20216 0.92941 0.99274 1.04046 1.25940 1.00323 0.98709 1.10379 1.84197 1.06427 1.01410 1.72843 1.24413 0.96516 0.98513 1.09940 1.19942 0.95222 0.84748 0.89015 0.92713 1.22084 1.01181 0.97123 0.96477 1.21428 0.99929 0.94471 0.98289 1.22072 0.99062 0.99437 0.96841 1.19638 0.93489 0.80054 0.91858 0.95782 1.21788 0.93880 1.39081 1.05183 0.92173 1.25759 1.00826 0.94337 0.96154 1.70207 1.34902 1.36775 1.11290 0.85836 0.81303 0.78967 0.77313 1.19776 1.21196 1.18812 1.87883 1.58486 1.24738 1.59901 0.89678 0.90029 0.93936 0.81678 0.78987 0.92229 0.90467 0.90396 0.92365 0.93079 0.91734 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.89 9.82 71.24 0.70 -2.19 16 2 C -0.12 -4.30 5.80 -20.92 -0.12 -4.42 16 3 C -0.13 -3.85 9.98 21.22 0.21 -3.64 16 4 C -0.22 -6.06 11.23 66.72 0.75 -5.31 16 5 S 0.09 3.02 23.21 -56.49 -1.31 1.71 16 6 C -0.18 -7.08 5.44 24.59 0.13 -6.95 16 7 C 0.17 7.59 2.65 29.88 0.08 7.67 16 8 H 0.06 2.73 5.22 -2.39 -0.01 2.71 16 9 C -0.13 -4.84 5.40 30.68 0.17 -4.67 16 10 C -0.10 -3.78 5.77 30.71 0.18 -3.61 16 11 C -0.14 -5.65 5.59 30.69 0.17 -5.48 16 12 C 0.21 10.67 3.16 29.88 0.09 10.77 16 13 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 14 C -0.56 -30.39 6.59 25.60 0.17 -30.22 16 15 H 0.06 3.15 6.87 -2.91 -0.02 3.13 16 16 C 0.03 1.77 5.40 84.66 0.46 2.22 16 17 N -0.89 -53.51 12.84 21.45 0.28 -53.24 16 18 Si 0.94 43.23 29.54 68.60 2.03 45.26 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 22 O -0.39 -20.51 9.52 -148.98 -1.42 -21.93 16 23 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.08 2.16 8.13 -2.39 -0.02 2.14 16 25 H 0.04 1.61 6.50 -2.39 -0.02 1.59 16 26 H 0.17 3.56 8.06 -2.91 -0.02 3.53 16 27 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.06 2.25 6.86 -2.39 -0.02 2.24 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -64.22 288.27 3.64 -60.58 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.08 Total: 13.44 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 2.99 Total: -45.82 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.28 Total: -53.24 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.42 Total: -21.93 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.31 Total: 1.71 kcal Total: -64.22 3.64 -60.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379828843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.540 kcal (2) G-P(sol) polarization free energy of solvation -64.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds