Wall clock time and date at job start Mon Mar 30 2020 06:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86798 * 119.99731 * 2 1 4 4 H 1.48493 * 109.47465 * 239.99816 * 3 2 1 5 5 H 1.48501 * 109.47309 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47206 * 119.99770 * 3 2 1 7 7 C 1.39716 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00001 * 186.18253 * 7 2 1 9 9 C 1.41161 * 120.00228 * 6.17683 * 7 2 1 10 10 C 1.37694 * 122.86235 * 174.00870 * 9 7 2 11 11 S 1.70994 * 108.83763 * 179.76604 * 10 9 7 12 12 C 1.75894 * 90.81090 * 0.33864 * 11 10 9 13 13 C 1.50696 * 124.99497 * 179.91248 * 12 11 10 14 14 N 1.46904 * 109.47276 * 269.69727 * 13 12 11 15 15 C 1.46849 * 111.00161 * 294.21275 * 14 13 12 16 16 C 1.53031 * 109.52397 * 174.15756 * 15 14 13 17 17 C 1.53124 * 109.27849 * 59.17777 * 16 15 14 18 18 C 1.53118 * 109.16072 * 302.34590 * 17 16 15 19 19 C 1.46842 * 111.00110 * 169.99806 * 14 13 12 20 20 N 1.28801 * 110.01250 * 359.64958 * 12 11 10 21 21 H 0.96998 * 120.00337 * 0.02562 * 1 2 3 22 22 H 1.07998 * 125.58158 * 0.02562 * 10 9 7 23 23 H 1.09002 * 109.47337 * 29.69885 * 13 12 11 24 24 H 1.09002 * 109.46906 * 149.70033 * 13 12 11 25 25 H 1.08997 * 109.45604 * 294.17468 * 15 14 13 26 26 H 1.09004 * 109.45824 * 54.14190 * 15 14 13 27 27 H 1.09001 * 109.50330 * 299.23704 * 16 15 14 28 28 H 1.08998 * 109.50301 * 179.11697 * 16 15 14 29 29 H 1.09000 * 109.52214 * 182.44584 * 17 16 15 30 30 H 1.08994 * 109.52284 * 62.25043 * 17 16 15 31 31 H 1.09005 * 109.50236 * 297.71474 * 18 17 16 32 32 H 1.08997 * 109.50411 * 177.59562 * 18 17 16 33 33 H 1.09006 * 109.46155 * 305.85965 * 19 14 13 34 34 H 1.08998 * 109.46031 * 65.82712 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0979 1.6965 -1.2124 5 1 1.2791 2.7465 0.0006 6 1 3.0979 1.6965 1.2125 7 6 2.0089 -1.2100 -0.0005 8 1 3.0841 -1.2127 0.1002 9 6 1.3093 -2.4289 -0.1326 10 6 1.9436 -3.6443 -0.2609 11 16 0.7615 -4.8732 -0.3886 12 6 -0.5265 -3.6810 -0.2725 13 6 -2.0001 -3.9942 -0.3107 14 7 -2.4746 -3.9483 -1.7002 15 6 -2.3875 -2.5860 -2.2415 16 6 -2.7501 -2.6021 -3.7281 17 6 -4.1707 -3.1482 -3.8961 18 6 -4.2469 -4.5484 -3.2812 19 6 -3.8408 -4.4759 -1.8075 20 7 -0.0252 -2.5015 -0.1445 21 1 -0.4850 0.8400 -0.0004 22 1 3.0126 -3.7969 -0.2741 23 1 -2.1707 -4.9898 0.0988 24 1 -2.5433 -3.2590 0.2831 25 1 -3.0804 -1.9374 -1.7056 26 1 -1.3712 -2.2112 -2.1195 27 1 -2.0491 -3.2397 -4.2668 28 1 -2.7005 -1.5885 -4.1258 29 1 -4.4172 -3.2021 -4.9564 30 1 -4.8764 -2.4893 -3.3901 31 1 -3.5694 -5.2166 -3.8129 32 1 -5.2666 -4.9253 -3.3596 33 1 -3.8801 -5.4737 -1.3703 34 1 -4.5269 -3.8184 -1.2737 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382260864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:51 Heat of formation + Delta-G solvation = 30.288783 kcal Electronic energy + Delta-G solvation = -16601.271536 eV Core-core repulsion = 14046.057334 eV Total energy + Delta-G solvation = -2555.214202 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.77442 -37.50453 -33.78205 -32.85042 -30.54376 -29.47185 -26.70714 -25.49311 -23.05688 -22.73497 -21.03424 -19.41089 -18.57303 -17.54067 -15.79377 -15.23199 -15.10014 -14.57402 -14.16777 -14.12382 -13.39155 -13.18833 -13.07454 -12.51901 -12.26895 -11.92347 -11.56542 -11.51527 -11.16221 -11.10039 -10.92818 -10.69073 -10.48594 -10.39046 -10.14916 -10.00623 -9.62593 -9.22701 -8.07939 -7.95067 -7.76903 -7.28259 -6.51141 -4.31355 2.31224 3.01290 3.08367 3.10472 3.13556 3.74390 4.03302 4.15771 4.51841 5.01606 5.06856 5.15264 5.36570 5.49417 5.53374 5.66425 5.77976 5.79675 5.88595 5.93128 6.09190 6.12428 6.20456 6.24104 6.36020 6.63694 6.73028 6.87339 7.13984 7.28181 7.45914 7.51820 7.58908 8.22789 8.59196 8.92654 9.64326 10.36622 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.007460 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.546727 B = 3752.672289 C = 4677.070592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.434 4.434 8 H 0.082 0.918 9 C 0.225 3.775 10 C -0.454 4.454 11 S -0.025 6.025 12 C 0.063 3.937 13 C 0.144 3.856 14 N -0.531 5.531 15 C 0.057 3.943 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.114 4.114 19 C 0.056 3.944 20 N -0.396 5.396 21 H 0.272 0.728 22 H 0.135 0.865 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 -4.367 -4.193 10.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.148 4.148 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.100 0.900 9 C 0.103 3.897 10 C -0.593 4.593 11 S 0.223 5.777 12 C -0.221 4.221 13 C 0.013 3.987 14 N -0.256 5.256 15 C -0.071 4.071 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.152 4.152 19 C -0.072 4.072 20 N -0.111 5.111 21 H 0.083 0.917 22 H 0.153 0.847 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.599 -5.082 -4.507 10.958 hybrid contribution 0.571 2.129 0.578 2.279 sum -8.028 -2.953 -3.929 9.413 Atomic orbital electron populations 1.70098 1.06891 1.27885 1.32777 1.25943 0.94936 1.00866 0.93045 0.86369 0.79973 0.80523 0.79783 1.19053 1.20404 1.19101 1.18883 0.94388 0.88536 1.45089 0.90023 1.17984 0.85408 0.93046 0.93251 1.25148 1.01083 0.94750 1.38326 1.82614 1.01748 1.16794 1.76581 1.27448 0.97999 0.90964 1.05684 1.20365 0.88521 1.00737 0.89094 1.61868 1.21587 1.23451 1.18738 1.22121 1.03463 0.87840 0.93668 1.21584 0.96236 1.00682 0.96851 1.21583 0.97483 0.96611 1.00089 1.21556 1.00501 0.97456 0.95656 1.22052 0.88930 0.99542 0.96666 1.67397 1.12346 1.19346 1.11968 0.91711 0.84675 0.90020 0.92721 0.95158 0.88527 0.91416 0.91963 0.92360 0.92572 0.91164 0.92046 0.91039 0.95246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.13 11.72 55.54 0.65 -19.48 16 2 C 0.07 1.93 5.49 -17.34 -0.10 1.84 16 3 Si 0.91 19.28 29.56 -169.99 -5.03 14.26 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.43 -12.08 9.23 -37.92 -0.35 -12.43 16 8 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 9 C 0.23 6.33 6.46 -86.17 -0.56 5.78 16 10 C -0.45 -11.85 10.98 30.53 0.34 -11.51 16 11 S -0.02 -0.56 23.16 -107.50 -2.49 -3.05 16 12 C 0.06 1.45 6.23 -13.55 -0.08 1.37 16 13 C 0.14 2.69 5.57 -4.98 -0.03 2.67 16 14 N -0.53 -9.19 4.65 -236.11 -1.10 -10.29 16 15 C 0.06 1.05 5.31 -3.84 -0.02 1.03 16 16 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 17 C -0.12 -1.49 6.00 -26.61 -0.16 -1.65 16 18 C -0.11 -1.36 6.09 -26.65 -0.16 -1.52 16 19 C 0.06 0.77 5.46 -3.84 -0.02 0.75 16 20 N -0.40 -10.58 7.54 -8.36 -0.06 -10.64 16 21 H 0.27 6.68 8.30 -40.82 -0.34 6.35 16 22 H 0.14 3.39 8.06 -52.49 -0.42 2.97 16 23 H 0.08 1.32 7.99 -51.93 -0.41 0.91 16 24 H 0.05 1.05 8.12 -51.93 -0.42 0.62 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.10 2.21 6.40 -51.93 -0.33 1.88 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.87 8.02 -51.93 -0.42 0.46 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 290.72 15.07 4.38 4.38 Total: -1.00 -28.97 290.72 -9.88 -38.85 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.94 Total: 1.60 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.30 Total: -15.63 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.51 Total: -40.41 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.26 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -2.49 Total: -3.05 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.97 -9.88 -38.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382260864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.141 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds