Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00332 * 2 1 4 4 H 1.48498 * 109.46899 * 269.99909 * 3 2 1 5 5 H 1.48495 * 109.47200 * 30.00032 * 3 2 1 6 6 H 1.48497 * 109.46831 * 150.00189 * 3 2 1 7 7 C 1.37883 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00211 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47170 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47350 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47350 * 180.02562 * 11 10 9 13 13 S 1.81397 * 109.47310 * 180.02562 * 12 11 10 14 14 C 1.76198 * 103.00056 * 180.02562 * 13 12 11 15 15 C 1.39146 * 119.62862 * 180.02562 * 14 13 12 16 16 C 1.38261 * 119.16622 * 180.02562 * 15 14 13 17 17 C 1.39431 * 118.45289 * 359.97438 * 16 15 14 18 18 N 1.40046 * 120.40286 * 180.02562 * 17 16 15 19 19 C 1.38636 * 119.19532 * 0.02562 * 17 16 15 20 20 N 1.31984 * 120.75773 * 359.97438 * 19 17 16 21 21 H 0.96997 * 119.99643 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46951 * 59.99805 * 9 7 2 23 23 H 1.09000 * 109.47093 * 300.00112 * 9 7 2 24 24 H 1.09000 * 109.47002 * 60.00061 * 10 9 7 25 25 H 1.08996 * 109.47218 * 300.00266 * 10 9 7 26 26 H 1.09008 * 109.46660 * 60.00471 * 11 10 9 27 27 H 1.09000 * 109.47204 * 300.00889 * 11 10 9 28 28 H 1.09000 * 109.47002 * 60.00307 * 12 11 10 29 29 H 1.08996 * 109.47218 * 300.00513 * 12 11 10 30 30 H 1.07995 * 120.42114 * 0.02562 * 15 14 13 31 31 H 1.08001 * 120.76977 * 179.97438 * 16 15 14 32 32 H 0.97007 * 119.99750 * 179.97438 * 18 17 16 33 33 H 0.96998 * 120.00342 * 359.97042 * 18 17 16 34 34 H 1.07999 * 119.62255 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 6 2.4742 -6.1501 0.0018 13 16 1.5671 -7.7210 0.0018 14 6 2.8557 -8.9228 0.0034 15 6 2.5338 -10.2765 0.0032 16 6 3.5526 -11.2113 0.0049 17 6 4.8708 -10.7572 0.0063 18 7 5.9343 -11.6684 0.0075 19 6 5.1161 -9.3927 0.0064 20 7 4.1192 -8.5277 0.0047 21 1 -0.4849 0.8400 0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8717 -3.6045 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 0.8531 -5.0451 -0.8887 27 1 0.8535 -5.0446 0.8913 28 1 3.1007 -6.0920 0.8918 29 1 3.1009 -6.0929 -0.8881 30 1 1.5013 -10.5931 0.0017 31 1 3.3322 -12.2686 0.0052 32 1 6.8492 -11.3460 0.0081 33 1 5.7561 -12.6219 0.0079 34 1 6.1345 -9.0334 0.0078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385254334.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = 5.341639 kcal Electronic energy + Delta-G solvation = -14907.113514 eV Core-core repulsion = 12350.817523 eV Total energy + Delta-G solvation = -2556.295991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17524 -35.33573 -35.11843 -32.61710 -32.22243 -29.49251 -29.21028 -25.21418 -23.93939 -23.22173 -21.77843 -20.04312 -18.00978 -17.60633 -17.13301 -16.14841 -15.29722 -15.09434 -15.04033 -14.41617 -14.37208 -14.13238 -13.37723 -12.75891 -12.71295 -12.50901 -11.90805 -11.77347 -11.39451 -11.00899 -10.64228 -10.60252 -10.44964 -10.09663 -9.92853 -9.71617 -9.61557 -9.23253 -8.97359 -8.74323 -8.29406 -7.12084 -5.94589 -3.96645 1.00866 1.13510 1.68314 2.53116 3.35692 3.41579 3.43568 3.45372 3.61502 4.45495 4.50622 4.59595 4.82807 4.96045 5.35152 5.38190 5.41213 5.45663 5.72247 5.75117 5.90728 6.09865 6.18875 6.26690 6.49578 6.79986 6.95374 6.95993 7.19009 7.28802 7.73620 7.74319 7.89461 8.06355 8.48992 9.10723 9.67020 11.16835 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.050284 B = 0.003102 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.706526 B = 9024.057940 C = 9549.714484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.081 4.081 13 S -0.100 6.100 14 C 0.072 3.928 15 C -0.102 4.102 16 C -0.140 4.140 17 C 0.153 3.847 18 N -0.873 5.873 19 C 0.044 3.956 20 N -0.448 5.448 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.400 0.600 33 H 0.399 0.601 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.939 -25.126 0.017 26.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.142 4.142 11 C -0.146 4.146 12 C -0.229 4.229 13 S 0.140 5.860 14 C -0.179 4.179 15 C -0.129 4.129 16 C -0.172 4.172 17 C 0.045 3.955 18 N -0.414 5.414 19 C -0.122 4.122 20 N -0.159 5.159 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.229 0.771 33 H 0.227 0.773 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.706 -24.154 0.021 25.354 hybrid contribution 1.999 -0.133 -0.010 2.003 sum 9.705 -24.287 0.011 26.154 Atomic orbital electron populations 1.69970 1.06044 1.26518 1.51039 1.25035 0.94849 0.99232 0.95436 0.86602 0.79854 0.83534 0.78063 1.20699 1.21253 1.19894 1.21279 0.93051 0.91134 1.50313 0.92703 1.19109 0.94027 0.91241 0.97291 1.21615 0.99076 0.93002 1.00535 1.21517 0.97289 0.93101 1.02652 1.23599 1.01103 0.92167 1.06074 1.85507 1.09308 0.99203 1.91937 1.22842 0.94892 0.95369 1.04758 1.21468 1.00283 0.91486 0.99653 1.20927 0.90625 1.00002 1.05600 1.18777 0.88941 0.91213 0.96614 1.42379 1.06201 1.07357 1.85457 1.22210 0.98494 0.87512 1.03988 1.67922 0.98786 1.37858 1.11335 0.93050 0.96554 0.96530 0.93199 0.93195 0.91557 0.91557 0.89492 0.89502 0.84370 0.84752 0.77130 0.77325 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.17 5.15 -26.73 -0.14 -2.31 16 11 C -0.11 -1.90 5.22 -26.73 -0.14 -2.04 16 12 C -0.08 -1.28 5.20 37.16 0.19 -1.09 16 13 S -0.10 -1.46 21.90 -107.50 -2.35 -3.82 16 14 C 0.07 0.98 6.99 -16.98 -0.12 0.86 16 15 C -0.10 -1.12 9.83 -39.24 -0.39 -1.50 16 16 C -0.14 -1.25 10.04 -39.13 -0.39 -1.64 16 17 C 0.15 1.36 6.79 -83.51 -0.57 0.79 16 18 N -0.87 -4.49 9.11 32.53 0.30 -4.19 16 19 C 0.04 0.48 11.05 -17.34 -0.19 0.29 16 20 N -0.45 -6.27 9.41 -11.98 -0.11 -6.38 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.40 1.41 8.86 -40.82 -0.36 1.05 16 33 H 0.40 1.29 8.86 -40.82 -0.36 0.93 16 34 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 307.46 15.07 4.63 4.63 Total: -1.00 -32.72 307.46 -9.03 -41.75 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.91 Total: -2.16 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.29 Total: -20.11 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.92 Total: -37.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.35 Total: -3.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.72 -9.03 -41.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385254334.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.092 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds