Wall clock time and date at job start Mon Mar 30 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.48410 * 2 1 4 4 C 1.33383 * 125.20231 * 269.74111 * 3 2 1 5 5 C 1.38424 * 114.92135 * 179.85821 * 4 3 2 6 6 C 1.33396 * 114.91834 * 0.43097 * 5 4 3 7 7 S 1.75884 * 109.59386 * 359.77045 * 6 5 4 8 8 C 1.53097 * 109.47629 * 120.02304 * 2 1 3 9 9 C 1.53174 * 109.16185 * 62.38636 * 8 2 1 10 10 C 1.53176 * 109.04061 * 56.97999 * 9 8 2 11 11 C 1.53091 * 109.21206 * 302.98570 * 10 9 8 12 12 H 1.09000 * 109.48171 * 297.66002 * 11 10 9 13 13 C 1.50704 * 109.48023 * 177.62153 * 11 10 9 14 14 H 1.07997 * 120.00051 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99775 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00416 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99888 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47237 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47351 * 119.99441 * 17 15 13 20 20 H 1.48497 * 109.47174 * 240.00140 * 17 15 13 21 21 O 1.42902 * 109.48782 * 239.96736 * 2 1 3 22 22 H 1.09003 * 109.47052 * 299.98261 * 1 2 3 23 23 H 1.09002 * 109.46891 * 59.97409 * 1 2 3 24 24 H 1.08994 * 109.47308 * 179.97438 * 1 2 3 25 25 H 1.07999 * 122.54151 * 0.02562 * 4 3 2 26 26 H 1.07998 * 122.54672 * 180.19844 * 5 4 3 27 27 H 1.08003 * 125.19904 * 179.74917 * 6 5 4 28 28 H 1.08995 * 109.52587 * 302.47488 * 8 2 1 29 29 H 1.09004 * 109.57034 * 182.31989 * 8 2 1 30 30 H 1.08995 * 109.54500 * 297.10556 * 9 8 2 31 31 H 1.08999 * 109.54245 * 176.84623 * 9 8 2 32 32 H 1.09002 * 109.52410 * 62.92413 * 10 9 8 33 33 H 1.09004 * 109.52533 * 183.05059 * 10 9 8 34 34 H 0.97000 * 120.00816 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 6 2.2938 2.1439 -1.0899 5 6 2.7441 3.4293 -0.8429 6 6 2.8572 3.7469 0.4478 7 16 2.3719 2.3761 1.4372 8 6 2.0405 -0.7222 1.2497 9 6 1.5758 -2.1813 1.2122 10 6 2.0768 -2.8322 -0.0807 11 6 1.5649 -2.0299 -1.2798 12 1 0.4753 -2.0565 -1.2966 13 6 2.1023 -2.6309 -2.5530 14 1 2.7442 -3.4984 -2.5117 15 6 1.7744 -2.0733 -3.7706 16 7 0.9923 -1.0173 -3.8210 17 14 2.4399 -2.8187 -5.3488 18 1 3.2893 -3.9923 -5.0223 19 1 1.3083 -3.2500 -6.2083 20 1 3.2519 -1.8063 -6.0705 21 8 2.0067 -0.6742 -1.1663 22 1 -0.3633 0.5136 0.8902 23 1 -0.3633 0.5143 -0.8898 24 1 -0.3633 -1.0276 -0.0005 25 1 2.1612 1.7569 -2.0894 26 1 2.9890 4.1214 -1.6349 27 1 3.1955 4.6999 0.8271 28 1 1.6419 -0.2357 2.1399 29 1 3.1297 -0.6872 1.2723 30 1 0.4869 -2.2180 1.2408 31 1 1.9826 -2.7156 2.0708 32 1 3.1668 -2.8399 -0.0861 33 1 1.7050 -3.8551 -0.1414 34 1 0.7613 -0.6251 -4.6776 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389596985.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:59 Heat of formation + Delta-G solvation = -37.489042 kcal Electronic energy + Delta-G solvation = -17119.022082 eV Core-core repulsion = 14528.576062 eV Total energy + Delta-G solvation = -2590.446020 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.63338 -38.32274 -35.17554 -34.13985 -33.29304 -29.75236 -29.14075 -27.17208 -25.20106 -23.87900 -22.85397 -20.01859 -19.94572 -18.84090 -17.91713 -16.78575 -16.61721 -16.24426 -15.65695 -15.58711 -14.91904 -14.46788 -14.19552 -13.74282 -13.57047 -13.23910 -13.19295 -12.94114 -12.86648 -12.81213 -12.59727 -12.36716 -12.08566 -11.78552 -11.72969 -11.63771 -11.29203 -10.85076 -10.47447 -9.79960 -9.38923 -9.27903 -8.12851 -6.31954 0.14238 0.71809 1.12222 1.38806 1.40754 1.52161 1.92165 2.40609 3.05099 3.60311 3.78771 4.01829 4.09532 4.26469 4.31698 4.41296 4.43148 4.64907 4.69193 4.79704 4.81630 4.87854 4.96177 5.07413 5.13316 5.24262 5.26177 5.31344 5.41577 5.57946 5.59889 5.67665 5.82506 6.24988 6.70009 7.24867 7.43246 8.93916 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.008111 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.678736 B = 3451.245602 C = 4240.426246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.167 3.833 3 C -0.174 4.174 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.212 4.212 7 S 0.125 5.875 8 C -0.133 4.133 9 C -0.114 4.114 10 C -0.140 4.140 11 C 0.216 3.784 12 H -0.006 1.006 13 C -0.551 4.551 14 H 0.061 0.939 15 C 0.029 3.971 16 N -0.889 5.889 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.283 1.283 21 O -0.372 6.372 22 H 0.077 0.923 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.109 0.891 26 H 0.154 0.846 27 H 0.198 0.802 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 6.647 11.179 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.125 3.875 3 C -0.291 4.291 4 C -0.172 4.172 5 C -0.175 4.175 6 C -0.347 4.347 7 S 0.388 5.612 8 C -0.171 4.171 9 C -0.151 4.151 10 C -0.178 4.178 11 C 0.161 3.839 12 H 0.012 0.988 13 C -0.589 4.589 14 H 0.079 0.921 15 C -0.174 4.174 16 N -0.525 5.525 17 Si 0.780 3.220 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.209 1.209 21 O -0.292 6.292 22 H 0.095 0.905 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.172 0.828 27 H 0.215 0.785 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.296 6.615 12.491 14.194 hybrid contribution 0.140 -0.230 -2.803 2.816 sum 1.436 6.385 9.688 11.691 Atomic orbital electron populations 1.22226 0.95422 1.02019 1.01413 1.19700 0.92632 0.86802 0.88390 1.24477 1.07986 0.99510 0.97104 1.20214 1.02672 0.94960 0.99405 1.20302 1.03297 0.96045 0.97806 1.25978 1.08965 1.03695 0.96053 1.83578 1.65128 1.04680 1.07833 1.22149 1.01040 0.96836 0.97045 1.21625 1.00997 0.94843 0.97651 1.22148 1.00213 0.99632 0.95817 1.19623 0.92897 0.78885 0.92520 0.98831 1.21463 1.32734 1.13241 0.91420 0.92081 1.25847 0.94436 0.94800 1.02362 1.70169 1.34965 1.21655 1.25749 0.85571 0.78428 0.78547 0.79437 1.18878 1.20065 1.20898 1.88328 1.72806 1.27383 1.40703 0.90453 0.94491 0.92180 0.87325 0.82848 0.78468 0.89617 0.92112 0.91560 0.89645 0.93374 0.91760 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.04 7.92 71.98 0.57 -5.47 16 2 C 0.17 6.90 1.04 -11.51 -0.01 6.88 16 3 C -0.17 -6.65 5.28 24.59 0.13 -6.52 16 4 C -0.14 -5.71 9.63 21.21 0.20 -5.51 16 5 C -0.14 -4.43 10.18 21.22 0.22 -4.21 16 6 C -0.21 -5.35 11.23 66.72 0.75 -4.60 16 7 S 0.13 3.47 22.15 -56.49 -1.25 2.22 16 8 C -0.13 -4.55 4.36 30.69 0.13 -4.42 16 9 C -0.11 -3.81 5.72 30.71 0.18 -3.63 16 10 C -0.14 -5.90 5.35 30.68 0.16 -5.74 16 11 C 0.22 11.30 2.18 29.88 0.07 11.36 16 12 H -0.01 -0.33 6.35 -2.39 -0.02 -0.34 16 13 C -0.55 -31.60 8.80 25.60 0.23 -31.38 16 14 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 15 C 0.03 1.63 5.40 84.66 0.46 2.09 16 16 N -0.89 -53.17 12.85 21.45 0.28 -52.90 16 17 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 18 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 21 O -0.37 -19.54 8.75 -148.98 -1.30 -20.85 16 22 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 2.41 4.98 -2.39 -0.01 2.40 16 25 H 0.11 5.23 7.90 -2.91 -0.02 5.21 16 26 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 27 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.09 2.42 7.67 -2.39 -0.02 2.41 16 29 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.07 2.14 6.62 -2.39 -0.02 2.12 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 34 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -65.75 286.23 3.91 -61.84 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.08 Total: 14.18 kcal Atomic # 6 Polarization: -54.22 SS G_CDS: 3.08 Total: -51.14 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.28 Total: -52.90 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.30 Total: -20.85 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.25 Total: 2.22 kcal Total: -65.75 3.91 -61.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389596985.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.356 kcal (2) G-P(sol) polarization free energy of solvation -65.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds