Wall clock time and date at job start Mon Mar 30 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.45201 * 109.47485 * 2 1 4 4 C 1.34725 * 117.00212 * 180.02562 * 3 2 1 5 5 O 1.21490 * 120.00333 * 359.97438 * 4 3 2 6 6 C 1.47568 * 120.00225 * 180.02562 * 4 3 2 7 7 C 1.39914 * 120.17162 * 90.01616 * 6 4 3 8 8 F 1.35109 * 120.11506 * 0.02562 * 7 6 4 9 9 C 1.38277 * 119.77243 * 179.97438 * 7 6 4 10 10 C 1.38236 * 120.12243 * 0.02562 * 9 7 6 11 11 C 1.38436 * 120.35388 * 359.74655 * 10 9 7 12 12 C 1.37882 * 120.21778 * 0.50924 * 11 10 9 13 13 C 1.50700 * 120.05872 * 179.77244 * 12 11 10 14 14 C 1.50702 * 109.46869 * 264.71988 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 H 1.09002 * 109.47562 * 300.00078 * 1 2 3 23 23 H 1.09003 * 109.47002 * 59.99757 * 1 2 3 24 24 H 1.09001 * 109.47626 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47073 * 240.00025 * 2 1 3 26 26 H 1.08996 * 109.47271 * 119.99978 * 2 1 3 27 27 H 1.07999 * 119.93367 * 179.97438 * 9 7 6 28 28 H 1.08000 * 119.82804 * 179.97438 * 10 9 7 29 29 H 1.07998 * 119.89221 * 180.27754 * 11 10 9 30 30 H 1.09004 * 109.47210 * 144.72281 * 13 12 11 31 31 H 1.08994 * 109.47551 * 24.71933 * 13 12 11 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0897 0.5820 -0.0005 6 6 3.9138 2.9090 0.0000 7 6 4.1835 3.5580 1.2098 8 9 3.9288 2.9381 2.3830 9 6 4.7126 4.8355 1.2007 10 6 4.9737 5.4696 0.0005 11 6 4.7132 4.8306 -1.1996 12 6 4.1807 3.5587 -1.2072 13 6 3.8938 2.8684 -2.5157 14 6 2.4492 3.0800 -2.8891 15 1 1.8035 3.6570 -2.2436 16 6 1.9532 2.5421 -4.0578 17 7 2.7396 1.8398 -4.8439 18 14 0.1646 2.8109 -4.5243 19 1 -0.0985 4.2662 -4.6593 20 1 -0.1170 2.1347 -5.8162 21 1 -0.7130 2.2451 -3.4684 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8899 27 1 4.9214 5.3390 2.1331 28 1 5.3865 6.4676 -0.0011 29 1 4.9242 5.3313 -2.1329 30 1 4.0902 1.8010 -2.4141 31 1 4.5346 3.2833 -3.2937 32 1 2.3906 1.4611 -5.6660 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396029602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:29 Heat of formation + Delta-G solvation = -119.836752 kcal Electronic energy + Delta-G solvation = -18618.566058 eV Core-core repulsion = 15458.335997 eV Total energy + Delta-G solvation = -3160.230061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.70052 -39.97949 -38.34555 -35.94201 -33.60281 -31.76225 -31.22417 -30.33986 -27.41765 -24.51070 -23.41312 -22.41546 -21.09853 -20.30852 -17.63424 -16.80413 -16.48612 -16.42500 -16.19018 -15.47382 -15.30781 -14.63151 -14.52517 -13.62790 -13.25765 -13.00989 -12.75785 -12.63322 -12.43415 -11.80133 -11.75234 -11.50001 -11.30672 -11.21567 -11.14145 -10.69913 -10.66586 -10.06069 -10.01522 -9.74713 -9.59409 -8.55993 -8.49673 -8.18593 -6.12076 -4.16733 1.29950 1.61768 2.68277 3.19690 3.27520 3.31892 3.35018 3.94044 4.38388 4.43738 5.02529 5.05417 5.23333 5.29116 5.35191 5.41134 5.54603 5.62295 5.66447 5.93149 6.11724 6.14600 6.28716 6.31983 6.45008 6.59431 6.74173 6.92553 7.17475 7.37965 7.50747 7.82441 8.14005 8.26529 8.87002 9.47341 10.98018 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.009685 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.279774 B = 2890.468875 C = 3901.593841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.334 6.334 4 C 0.540 3.460 5 O -0.507 6.507 6 C -0.149 4.149 7 C 0.130 3.870 8 F -0.140 7.140 9 C -0.182 4.182 10 C -0.073 4.073 11 C -0.135 4.135 12 C 0.033 3.967 13 C 0.039 3.961 14 C -0.512 4.512 15 H 0.061 0.939 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.896 3.104 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 3.156 9.564 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.250 6.250 4 C 0.383 3.617 5 O -0.396 6.396 6 C -0.151 4.151 7 C 0.110 3.890 8 F -0.118 7.118 9 C -0.200 4.200 10 C -0.091 4.091 11 C -0.153 4.153 12 C 0.033 3.967 13 C 0.002 3.998 14 C -0.550 4.550 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.723 3.277 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.127 2.699 9.438 9.817 hybrid contribution -0.984 -0.183 -0.136 1.010 sum -0.857 2.516 9.302 9.675 Atomic orbital electron populations 1.21776 0.92974 1.02401 1.03637 1.22962 0.95233 0.80687 1.02211 1.86675 1.23461 1.31638 1.83195 1.20685 0.80906 0.89188 0.70921 1.90800 1.60743 1.42167 1.45852 1.19019 1.08463 0.94045 0.93566 1.17582 1.00219 0.91651 0.79501 1.91479 1.91996 1.82707 1.45665 1.20805 1.05751 0.93663 0.99828 1.21112 0.97036 0.99396 0.91515 1.21134 1.01059 0.94695 0.98456 1.20676 0.87920 0.92965 0.95174 1.18560 0.98288 0.95858 0.87090 1.20885 0.93678 1.34161 1.06252 0.92056 1.24971 0.97980 0.94871 0.96156 1.69952 1.35687 1.34377 1.12901 0.86584 0.84793 0.78591 0.77715 1.20014 1.21231 1.19916 0.91881 0.90987 0.90656 0.90869 0.91900 0.84780 0.85084 0.84598 0.94808 0.94042 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.29 37.15 0.38 -1.79 16 2 C 0.06 1.12 6.19 37.15 0.23 1.35 16 3 O -0.33 -7.24 10.23 -40.56 -0.41 -7.66 16 4 C 0.54 12.35 5.60 34.54 0.19 12.55 16 5 O -0.51 -12.34 16.90 -19.26 -0.33 -12.67 16 6 C -0.15 -3.18 5.76 -104.93 -0.60 -3.78 16 7 C 0.13 2.38 7.29 -38.94 -0.28 2.10 16 8 F -0.14 -2.54 16.83 2.25 0.04 -2.50 16 9 C -0.18 -2.70 10.01 -39.57 -0.40 -3.10 16 10 C -0.07 -1.03 10.03 -39.51 -0.40 -1.43 16 11 C -0.14 -2.36 9.66 -39.64 -0.38 -2.74 16 12 C 0.03 0.71 5.10 -104.22 -0.53 0.18 16 13 C 0.04 0.98 4.63 -29.03 -0.13 0.85 16 14 C -0.51 -13.88 9.09 -34.44 -0.31 -14.19 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 18 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.03 0.95 7.28 -51.93 -0.38 0.57 16 31 H 0.04 1.07 8.05 -51.93 -0.42 0.65 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -30.98 293.49 -6.62 -37.60 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.72 Total: -1.81 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.33 Total: -8.39 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.74 Total: -25.03 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.74 Total: -20.33 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.98 -6.62 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396029602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.237 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds