Wall clock time and date at job start Mon Mar 30 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.45201 * 109.47485 * 2 1 4 4 C 1.34725 * 117.00212 * 180.02562 * 3 2 1 5 5 O 1.21490 * 120.00333 * 359.97438 * 4 3 2 6 6 C 1.47568 * 120.00225 * 180.02562 * 4 3 2 7 7 C 1.39914 * 120.17162 * 90.01616 * 6 4 3 8 8 F 1.35109 * 120.11506 * 0.02562 * 7 6 4 9 9 C 1.38277 * 119.77243 * 179.97438 * 7 6 4 10 10 C 1.38236 * 120.12243 * 0.02562 * 9 7 6 11 11 C 1.38436 * 120.35388 * 359.74655 * 10 9 7 12 12 C 1.37882 * 120.21778 * 0.50924 * 11 10 9 13 13 C 1.50700 * 120.05872 * 179.77244 * 12 11 10 14 14 C 1.50702 * 109.46869 * 264.71988 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 H 1.09002 * 109.47562 * 300.00078 * 1 2 3 23 23 H 1.09003 * 109.47002 * 59.99757 * 1 2 3 24 24 H 1.09001 * 109.47626 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47073 * 240.00025 * 2 1 3 26 26 H 1.08996 * 109.47271 * 119.99978 * 2 1 3 27 27 H 1.07999 * 119.93367 * 179.97438 * 9 7 6 28 28 H 1.08000 * 119.82804 * 179.97438 * 10 9 7 29 29 H 1.07998 * 119.89221 * 180.27754 * 11 10 9 30 30 H 1.09004 * 109.47210 * 144.72281 * 13 12 11 31 31 H 1.08994 * 109.47551 * 24.71933 * 13 12 11 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0897 0.5820 -0.0005 6 6 3.9138 2.9090 0.0000 7 6 4.1835 3.5580 1.2098 8 9 3.9288 2.9381 2.3830 9 6 4.7126 4.8355 1.2007 10 6 4.9737 5.4696 0.0005 11 6 4.7132 4.8306 -1.1996 12 6 4.1807 3.5587 -1.2072 13 6 3.8938 2.8684 -2.5157 14 6 2.4492 3.0800 -2.8891 15 1 1.8035 3.6570 -2.2436 16 6 1.9532 2.5421 -4.0578 17 7 2.7396 1.8398 -4.8439 18 14 0.1646 2.8109 -4.5243 19 1 -0.0985 4.2662 -4.6593 20 1 -0.1170 2.1347 -5.8162 21 1 -0.7130 2.2451 -3.4684 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8899 27 1 4.9214 5.3390 2.1331 28 1 5.3865 6.4676 -0.0011 29 1 4.9242 5.3313 -2.1329 30 1 4.0902 1.8010 -2.4141 31 1 4.5346 3.2833 -3.2937 32 1 2.3906 1.4611 -5.6660 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396029602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:29 Heat of formation + Delta-G solvation = -137.310793 kcal Electronic energy + Delta-G solvation = -18619.323790 eV Core-core repulsion = 15458.335997 eV Total energy + Delta-G solvation = -3160.987792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.09662 -41.64898 -39.80841 -37.65208 -35.53325 -33.39434 -32.74055 -31.74083 -29.22084 -26.11265 -25.18571 -23.79202 -22.68810 -21.88302 -19.24382 -18.51619 -18.33163 -18.01711 -17.78005 -16.95633 -16.71873 -16.53685 -15.86547 -15.11556 -14.76811 -14.53088 -14.49040 -14.39003 -13.73644 -13.36928 -13.32319 -12.99868 -12.95935 -12.83015 -12.56529 -12.54942 -12.44872 -11.86754 -11.62634 -11.58082 -11.45265 -10.63202 -9.97951 -9.65058 -8.23466 -6.36175 -0.09500 0.23726 0.93986 1.38829 1.41380 1.49592 1.67689 2.36683 2.59702 3.03226 3.10300 3.57294 3.77481 3.92495 4.02273 4.04826 4.24465 4.28687 4.31830 4.66370 4.79977 4.85467 4.87015 5.02738 5.04380 5.13518 5.22650 5.32846 5.34238 5.68085 5.69254 5.85313 6.06516 6.54503 6.74047 7.32352 8.86724 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.009685 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.279774 B = 2890.468875 C = 3901.593841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.533 3.467 5 O -0.539 6.539 6 C -0.180 4.180 7 C 0.117 3.883 8 F -0.142 7.142 9 C -0.156 4.156 10 C -0.046 4.046 11 C -0.136 4.136 12 C -0.001 4.001 13 C 0.050 3.950 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.010 3.990 17 N -0.929 5.929 18 Si 0.959 3.041 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.267 1.267 22 H 0.078 0.922 23 H 0.052 0.948 24 H 0.110 0.890 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.181 0.819 28 H 0.188 0.812 29 H 0.148 0.852 30 H -0.012 1.012 31 H 0.025 0.975 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 5.695 11.220 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.263 6.263 4 C 0.378 3.622 5 O -0.429 6.429 6 C -0.182 4.182 7 C 0.098 3.902 8 F -0.121 7.121 9 C -0.174 4.174 10 C -0.063 4.063 11 C -0.154 4.154 12 C -0.002 4.002 13 C 0.014 3.986 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.189 4.189 17 N -0.568 5.568 18 Si 0.783 3.217 19 H -0.186 1.186 20 H -0.208 1.208 21 H -0.191 1.191 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.128 0.872 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.198 0.802 28 H 0.205 0.795 29 H 0.166 0.834 30 H 0.007 0.993 31 H 0.044 0.956 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.519 5.251 11.107 12.296 hybrid contribution -0.727 -0.958 -0.581 1.336 sum -1.246 4.293 10.525 11.435 Atomic orbital electron populations 1.21808 0.89938 1.04658 1.03424 1.23324 0.97640 0.79244 1.02020 1.86671 1.23080 1.33769 1.82806 1.21243 0.81098 0.89969 0.69934 1.90749 1.61337 1.43391 1.47469 1.19131 1.10315 0.93684 0.95064 1.17836 1.01069 0.92911 0.78384 1.91470 1.92128 1.83082 1.45377 1.21392 1.02315 0.91604 1.02127 1.21664 0.94260 1.00968 0.89445 1.21361 1.00164 0.93024 1.00851 1.20352 0.91646 0.95012 0.93147 1.18217 0.97455 0.93554 0.89410 1.21143 0.94670 1.33748 1.06165 0.92266 1.25865 1.02457 0.94464 0.96117 1.70086 1.37797 1.35540 1.13420 0.85582 0.79419 0.79178 0.77523 1.18587 1.20782 1.19147 0.90256 0.92870 0.87164 0.93046 0.90170 0.80157 0.79463 0.83385 0.99338 0.95626 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 10.29 71.98 0.74 -3.24 16 2 C 0.05 1.88 6.19 71.98 0.45 2.33 16 3 O -0.35 -15.70 10.23 -56.35 -0.58 -16.28 16 4 C 0.53 25.60 5.60 70.28 0.39 25.99 16 5 O -0.54 -27.88 16.90 19.87 0.34 -27.54 16 6 C -0.18 -7.82 5.76 -20.06 -0.12 -7.93 16 7 C 0.12 4.11 7.29 22.69 0.17 4.28 16 8 F -0.14 -4.96 16.83 44.97 0.76 -4.21 16 9 C -0.16 -3.90 10.01 22.28 0.22 -3.68 16 10 C -0.05 -1.07 10.03 22.32 0.22 -0.85 16 11 C -0.14 -4.47 9.66 22.23 0.21 -4.26 16 12 C 0.00 -0.05 5.10 -19.60 -0.10 -0.15 16 13 C 0.05 2.71 4.63 29.10 0.13 2.85 16 14 C -0.52 -29.16 9.09 25.60 0.23 -28.93 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 16 C 0.01 0.54 5.46 84.66 0.46 1.00 16 17 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 18 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 27 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 28 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 30 H -0.01 -0.71 7.28 -2.38 -0.02 -0.73 16 31 H 0.03 1.40 8.05 -2.39 -0.02 1.38 16 32 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -72.51 293.49 6.97 -65.54 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 1.12 Total: 5.01 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 3.02 Total: -12.59 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.54 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.24 Total: -43.82 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.76 Total: -4.21 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -72.51 6.97 -65.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396029602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.773 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds