Wall clock time and date at job start Mon Mar 30 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46761 * 2 1 4 4 C 1.36210 * 119.78905 * 265.00061 * 3 2 1 5 5 C 1.40859 * 120.01355 * 179.97438 * 4 3 2 6 6 C 1.40915 * 120.19126 * 180.02562 * 5 4 3 7 7 H 1.07992 * 120.00511 * 154.55473 * 6 5 4 8 8 C 1.39818 * 119.99593 * 334.82401 * 6 5 4 9 9 N 1.30968 * 120.00473 * 341.71516 * 8 6 5 10 10 Si 1.86804 * 119.99564 * 161.70809 * 8 6 5 11 11 H 1.48504 * 109.46920 * 94.51649 * 10 8 6 12 12 H 1.48499 * 109.47075 * 214.50902 * 10 8 6 13 13 H 1.48489 * 109.47401 * 334.51074 * 10 8 6 14 14 C 1.41534 * 119.61775 * 0.27388 * 5 4 3 15 15 O 1.35690 * 120.20264 * 179.74855 * 14 5 4 16 16 C 1.42900 * 116.99750 * 180.02562 * 15 14 5 17 17 C 1.37912 * 119.58839 * 359.51160 * 14 5 4 18 18 C 1.39382 * 119.97362 * 0.46985 * 17 14 5 19 19 S 1.76209 * 119.80678 * 179.78216 * 18 17 14 20 20 C 1.80998 * 100.00109 * 359.97438 * 19 18 17 21 21 H 1.09004 * 109.47464 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47388 * 299.99642 * 1 2 3 23 23 H 1.09001 * 109.47725 * 59.99854 * 1 2 3 24 24 H 1.09004 * 109.46814 * 240.00779 * 2 1 3 25 25 H 1.08994 * 109.47415 * 119.99901 * 2 1 3 26 26 H 1.07996 * 119.99615 * 0.02562 * 4 3 2 27 27 H 0.96998 * 120.00310 * 179.97438 * 9 8 6 28 28 H 1.09000 * 109.47062 * 180.02562 * 16 15 14 29 29 H 1.09002 * 109.46866 * 299.99917 * 16 15 14 30 30 H 1.08993 * 109.47441 * 59.99549 * 16 15 14 31 31 H 1.08001 * 120.00896 * 180.20667 * 17 14 5 32 32 H 1.09001 * 109.47427 * 300.00316 * 20 19 18 33 33 H 1.09006 * 109.46554 * 59.99882 * 20 19 18 34 34 H 1.08995 * 109.47107 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3549 2.0246 -1.1776 5 6 2.8242 3.3526 -1.1832 6 6 3.1586 3.9810 -2.3993 7 1 3.1183 5.0571 -2.4802 8 6 3.5372 3.2108 -3.5031 9 7 3.9277 1.9721 -3.3344 10 14 3.4857 3.9485 -5.2185 11 1 4.8260 4.4845 -5.5673 12 1 3.1022 2.8995 -6.1972 13 1 2.4881 5.0478 -5.2549 14 6 2.9631 4.0505 0.0403 15 8 3.4190 5.3285 0.0492 16 6 3.5330 5.9677 1.3221 17 6 2.6275 3.4253 1.2228 18 6 2.1643 2.1108 1.2084 19 16 1.7423 1.3142 2.7225 20 6 2.1058 2.6476 3.8912 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8932 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 2.2500 1.4852 -2.1073 27 1 4.1900 1.4377 -4.1002 28 1 3.9073 6.9825 1.1869 29 1 2.5540 6.0027 1.8001 30 1 4.2241 5.4058 1.9503 31 1 2.7277 3.9526 2.1600 32 1 3.1578 2.9222 3.8134 33 1 1.4861 3.5136 3.6585 34 1 1.8920 2.3102 4.9053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575704739.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:33 Heat of formation + Delta-G solvation = -33.151414 kcal Electronic energy + Delta-G solvation = -16610.843559 eV Core-core repulsion = 14020.585632 eV Total energy + Delta-G solvation = -2590.257926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.76928 -36.56886 -34.06285 -32.46739 -30.28152 -28.46455 -27.84549 -26.46687 -25.25626 -22.62094 -21.26675 -19.60303 -17.41897 -16.97059 -15.61342 -15.16362 -14.76366 -14.67693 -14.30358 -13.43618 -13.34712 -13.24191 -13.02285 -12.70916 -12.24690 -12.10257 -11.80714 -11.53955 -11.21956 -11.12376 -10.89793 -10.83443 -10.59027 -10.28872 -10.00466 -9.94382 -9.73233 -9.26387 -9.20440 -8.10295 -7.15197 -6.84723 -6.50487 -4.23588 2.50085 2.58121 2.91663 3.07040 3.08270 3.15492 3.32295 3.92326 4.44071 4.51397 5.42697 5.44599 5.46825 5.69530 5.73861 5.75896 5.80440 5.89041 5.97906 6.07202 6.15354 6.46737 6.50965 6.57903 6.74545 6.90764 7.00484 7.16115 7.24942 7.47455 7.64487 7.90585 8.12533 8.34545 8.63000 8.77630 8.99619 10.13751 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.008379 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.073601 B = 3340.907211 C = 4459.852581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.057 4.057 4 C -0.137 4.137 5 C 0.104 3.896 6 C -0.438 4.438 7 H 0.084 0.916 8 C 0.073 3.927 9 N -0.789 5.789 10 Si 0.909 3.091 11 H -0.270 1.270 12 H -0.275 1.275 13 H -0.260 1.260 14 C 0.019 3.981 15 O -0.310 6.310 16 C 0.035 3.965 17 C -0.176 4.176 18 C -0.180 4.180 19 S -0.154 6.154 20 C -0.141 4.141 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.128 0.872 27 H 0.282 0.718 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 0.538 6.085 6.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.062 4.062 4 C -0.158 4.158 5 C 0.100 3.900 6 C -0.467 4.467 7 H 0.102 0.898 8 C -0.145 4.145 9 N -0.414 5.414 10 Si 0.733 3.267 11 H -0.195 1.195 12 H -0.200 1.200 13 H -0.184 1.184 14 C -0.027 4.027 15 O -0.225 6.225 16 C -0.061 4.061 17 C -0.199 4.199 18 C -0.293 4.293 19 S 0.083 5.917 20 C -0.310 4.310 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.943 -0.663 6.118 6.822 hybrid contribution 0.630 1.611 -0.664 1.852 sum -2.313 0.947 5.454 6.000 Atomic orbital electron populations 1.21694 0.95829 1.00201 1.02104 1.20393 0.95413 0.94348 1.01289 1.18834 1.00944 0.94558 0.91862 1.20627 1.03350 0.95576 0.96214 1.17100 0.91508 0.91523 0.89849 1.19413 1.38083 0.95203 0.93998 0.89806 1.25932 0.92525 0.94568 1.01486 1.69884 1.29769 1.08632 1.33091 0.86277 0.79590 0.79892 0.80906 1.19534 1.19999 1.18352 1.19016 1.05444 0.84597 0.93676 1.85982 1.82301 1.25581 1.28611 1.22724 0.99793 0.97116 0.86496 1.20612 1.07824 0.95291 0.96207 1.20392 1.18172 0.96949 0.93785 1.84850 1.85373 1.21903 0.99543 1.23453 1.04522 1.01671 1.01313 0.93739 0.92344 0.92993 0.91880 0.92054 0.85467 0.90751 0.89892 0.94393 0.94295 0.87963 0.90787 0.90790 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.89 37.16 0.37 -2.08 16 2 C -0.08 -1.52 5.50 -27.88 -0.15 -1.67 16 3 C -0.06 -1.33 5.12 -104.78 -0.54 -1.87 16 4 C -0.14 -3.49 8.22 -39.32 -0.32 -3.82 16 5 C 0.10 2.79 5.58 -106.64 -0.59 2.19 16 6 C -0.44 -11.68 8.69 -37.98 -0.33 -12.01 16 7 H 0.08 2.22 7.66 -52.49 -0.40 1.82 16 8 C 0.07 1.82 5.11 -17.33 -0.09 1.73 16 9 N -0.79 -20.06 11.02 55.54 0.61 -19.44 16 10 Si 0.91 18.62 29.60 -169.99 -5.03 13.59 16 11 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 14 C 0.02 0.46 6.71 -38.45 -0.26 0.20 16 15 O -0.31 -7.17 9.79 -18.77 -0.18 -7.36 16 16 C 0.04 0.60 9.81 101.05 0.99 1.59 16 17 C -0.18 -3.97 8.15 -39.28 -0.32 -4.29 16 18 C -0.18 -4.05 6.14 -38.58 -0.24 -4.28 16 19 S -0.15 -2.85 20.55 -107.50 -2.21 -5.06 16 20 C -0.14 -2.10 8.97 101.05 0.91 -1.19 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.23 8.03 -51.93 -0.42 0.81 16 25 H 0.06 1.18 6.99 -51.93 -0.36 0.82 16 26 H 0.13 3.33 6.20 -52.49 -0.33 3.00 16 27 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 30 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 31 H 0.10 2.01 3.68 -52.49 -0.19 1.82 16 32 H 0.07 1.10 7.52 -51.92 -0.39 0.71 16 33 H 0.07 1.08 7.52 -51.91 -0.39 0.69 16 34 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 291.67 15.07 4.40 4.40 Total: -1.00 -27.91 291.67 -7.50 -35.41 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.50 Total: 3.96 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -0.58 Total: -25.50 kcal Atomic # 7 Polarization: -20.06 SS G_CDS: 0.61 Total: -19.44 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.18 Total: -7.36 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.21 Total: -5.06 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.91 -7.50 -35.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575704739.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.259 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds