Wall clock time and date at job start Mon Mar 30 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46761 * 2 1 4 4 C 1.36210 * 119.78905 * 265.00061 * 3 2 1 5 5 C 1.40859 * 120.01355 * 179.97438 * 4 3 2 6 6 C 1.40915 * 120.19126 * 180.02562 * 5 4 3 7 7 H 1.07992 * 120.00511 * 154.55473 * 6 5 4 8 8 C 1.39818 * 119.99593 * 334.82401 * 6 5 4 9 9 N 1.30968 * 120.00473 * 341.71516 * 8 6 5 10 10 Si 1.86804 * 119.99564 * 161.70809 * 8 6 5 11 11 H 1.48504 * 109.46920 * 94.51649 * 10 8 6 12 12 H 1.48499 * 109.47075 * 214.50902 * 10 8 6 13 13 H 1.48489 * 109.47401 * 334.51074 * 10 8 6 14 14 C 1.41534 * 119.61775 * 0.27388 * 5 4 3 15 15 O 1.35690 * 120.20264 * 179.74855 * 14 5 4 16 16 C 1.42900 * 116.99750 * 180.02562 * 15 14 5 17 17 C 1.37912 * 119.58839 * 359.51160 * 14 5 4 18 18 C 1.39382 * 119.97362 * 0.46985 * 17 14 5 19 19 S 1.76209 * 119.80678 * 179.78216 * 18 17 14 20 20 C 1.80998 * 100.00109 * 359.97438 * 19 18 17 21 21 H 1.09004 * 109.47464 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47388 * 299.99642 * 1 2 3 23 23 H 1.09001 * 109.47725 * 59.99854 * 1 2 3 24 24 H 1.09004 * 109.46814 * 240.00779 * 2 1 3 25 25 H 1.08994 * 109.47415 * 119.99901 * 2 1 3 26 26 H 1.07996 * 119.99615 * 0.02562 * 4 3 2 27 27 H 0.96998 * 120.00310 * 179.97438 * 9 8 6 28 28 H 1.09000 * 109.47062 * 180.02562 * 16 15 14 29 29 H 1.09002 * 109.46866 * 299.99917 * 16 15 14 30 30 H 1.08993 * 109.47441 * 59.99549 * 16 15 14 31 31 H 1.08001 * 120.00896 * 180.20667 * 17 14 5 32 32 H 1.09001 * 109.47427 * 300.00316 * 20 19 18 33 33 H 1.09006 * 109.46554 * 59.99882 * 20 19 18 34 34 H 1.08995 * 109.47107 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3549 2.0246 -1.1776 5 6 2.8242 3.3526 -1.1832 6 6 3.1586 3.9810 -2.3993 7 1 3.1183 5.0571 -2.4802 8 6 3.5372 3.2108 -3.5031 9 7 3.9277 1.9721 -3.3344 10 14 3.4857 3.9485 -5.2185 11 1 4.8260 4.4845 -5.5673 12 1 3.1022 2.8995 -6.1972 13 1 2.4881 5.0478 -5.2549 14 6 2.9631 4.0505 0.0403 15 8 3.4190 5.3285 0.0492 16 6 3.5330 5.9677 1.3221 17 6 2.6275 3.4253 1.2228 18 6 2.1643 2.1108 1.2084 19 16 1.7423 1.3142 2.7225 20 6 2.1058 2.6476 3.8912 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8932 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 2.2500 1.4852 -2.1073 27 1 4.1900 1.4377 -4.1002 28 1 3.9073 6.9825 1.1869 29 1 2.5540 6.0027 1.8001 30 1 4.2241 5.4058 1.9503 31 1 2.7277 3.9526 2.1600 32 1 3.1578 2.9222 3.8134 33 1 1.4861 3.5136 3.6585 34 1 1.8920 2.3102 4.9053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575704739.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:33 Heat of formation + Delta-G solvation = -47.827261 kcal Electronic energy + Delta-G solvation = -16611.479951 eV Core-core repulsion = 14020.585632 eV Total energy + Delta-G solvation = -2590.894319 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52468 -38.29073 -35.87611 -34.11258 -32.03212 -29.91677 -29.37719 -27.98096 -27.07594 -24.21545 -23.08481 -21.33445 -19.20124 -18.73864 -17.34345 -16.77850 -16.37599 -16.28401 -15.93905 -14.98563 -14.79519 -14.65767 -14.58990 -14.24289 -13.89889 -13.60712 -13.46432 -13.10309 -12.81529 -12.67241 -12.55162 -12.41660 -12.18508 -11.84467 -11.66032 -11.56054 -11.43479 -11.07548 -10.83366 -9.88846 -8.92221 -8.65611 -8.17540 -6.15230 0.77066 1.05377 1.09793 1.37854 1.45319 1.53456 1.76543 2.21787 2.64852 2.88003 3.58713 4.12263 4.22120 4.29428 4.32909 4.37456 4.40218 4.43057 4.63447 4.68856 4.84875 4.88907 4.95132 5.03142 5.09777 5.18298 5.33033 5.41277 5.45748 5.64411 5.78805 6.05694 6.25350 6.47473 6.76221 6.87951 7.18439 8.32867 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.008379 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.073601 B = 3340.907211 C = 4459.852581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C -0.072 4.072 4 C -0.154 4.154 5 C 0.065 3.935 6 C -0.477 4.477 7 H 0.070 0.930 8 C 0.035 3.965 9 N -0.821 5.821 10 Si 0.980 3.020 11 H -0.264 1.264 12 H -0.262 1.262 13 H -0.261 1.261 14 C 0.004 3.996 15 O -0.338 6.338 16 C 0.026 3.974 17 C -0.180 4.180 18 C -0.185 4.185 19 S -0.144 6.144 20 C -0.138 4.138 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.289 0.711 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 0.546 7.768 8.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.077 4.077 4 C -0.175 4.175 5 C 0.061 3.939 6 C -0.507 4.507 7 H 0.089 0.911 8 C -0.180 4.180 9 N -0.447 5.447 10 Si 0.800 3.200 11 H -0.188 1.188 12 H -0.186 1.186 13 H -0.185 1.185 14 C -0.042 4.042 15 O -0.253 6.253 16 C -0.069 4.069 17 C -0.203 4.203 18 C -0.297 4.297 19 S 0.094 5.906 20 C -0.307 4.307 21 H 0.093 0.907 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.439 -0.659 7.829 8.577 hybrid contribution 0.774 1.619 -0.914 2.014 sum -2.665 0.960 6.915 7.473 Atomic orbital electron populations 1.21621 0.93834 1.02038 1.01501 1.20402 0.97072 0.92193 1.01418 1.19235 1.00527 0.96261 0.91646 1.20579 1.04634 0.95644 0.96642 1.17499 0.92727 0.92590 0.91048 1.19505 1.40795 0.94802 0.95565 0.91135 1.26702 0.91523 0.94883 1.04879 1.69925 1.30557 1.09802 1.34440 0.85232 0.79594 0.79127 0.76011 1.18838 1.18644 1.18534 1.19210 1.05564 0.85520 0.93933 1.85928 1.82195 1.24976 1.32175 1.23082 1.01004 0.98259 0.84558 1.20941 1.07099 0.95551 0.96691 1.20882 1.15838 0.97102 0.95922 1.84754 1.84944 1.23128 0.97820 1.23593 1.04837 1.00475 1.01754 0.90678 0.92485 0.93988 0.92373 0.91202 0.87184 0.90046 0.86833 0.93021 0.93361 0.84963 0.90485 0.90199 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.89 71.98 0.71 -3.72 16 2 C -0.07 -2.86 5.50 29.85 0.16 -2.70 16 3 C -0.07 -3.39 5.12 -19.96 -0.10 -3.49 16 4 C -0.15 -8.22 8.22 22.44 0.18 -8.03 16 5 C 0.07 3.64 5.58 -21.17 -0.12 3.53 16 6 C -0.48 -26.81 8.69 23.31 0.20 -26.60 16 7 H 0.07 3.97 7.66 -2.91 -0.02 3.95 16 8 C 0.03 1.81 5.11 85.20 0.44 2.24 16 9 N -0.82 -43.47 11.02 21.81 0.24 -43.23 16 10 Si 0.98 39.28 29.60 68.60 2.03 41.31 16 11 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 12 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 13 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 14 C 0.00 0.19 6.71 23.01 0.15 0.35 16 15 O -0.34 -15.78 9.79 -90.09 -0.88 -16.66 16 16 C 0.03 0.84 9.81 113.37 1.11 1.95 16 17 C -0.18 -7.95 8.15 22.47 0.18 -7.77 16 18 C -0.19 -8.13 6.14 22.92 0.14 -7.99 16 19 S -0.14 -4.93 20.55 -56.49 -1.16 -6.09 16 20 C -0.14 -3.55 8.97 113.37 1.02 -2.54 16 21 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.06 1.91 7.70 -2.39 -0.02 1.89 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 25 H 0.07 2.59 6.99 -2.39 -0.02 2.57 16 26 H 0.11 6.11 6.20 -2.91 -0.02 6.09 16 27 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 28 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.05 1.51 7.65 -2.39 -0.02 1.49 16 30 H 0.05 1.45 7.67 -2.39 -0.02 1.44 16 31 H 0.13 4.88 3.68 -2.91 -0.01 4.87 16 32 H 0.08 1.98 7.52 -2.39 -0.02 1.97 16 33 H 0.08 2.01 7.52 -2.39 -0.02 1.99 16 34 H 0.12 2.38 8.14 -2.40 -0.02 2.36 16 Total: -1.00 -62.95 291.67 5.41 -57.54 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 1.10 Total: 21.90 kcal Atomic # 6 Polarization: -58.86 SS G_CDS: 4.09 Total: -54.77 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.24 Total: -43.23 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.88 Total: -16.66 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -1.16 Total: -6.09 kcal Total: -62.95 5.41 -57.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575704739.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.717 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds