Wall clock time and date at job start Mon Mar 30 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47054 * 2 1 4 4 C 1.53001 * 109.46932 * 239.99522 * 2 1 3 5 5 C 1.50703 * 109.46892 * 175.00016 * 4 2 1 6 6 H 1.07997 * 119.99605 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99658 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00113 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99611 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47006 * 60.00069 * 9 7 5 11 11 H 1.48498 * 109.46862 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46946 * 300.00317 * 9 7 5 13 13 S 1.81397 * 109.46874 * 120.00021 * 2 1 3 14 14 C 1.76197 * 102.99958 * 290.09247 * 13 2 1 15 15 C 1.38993 * 120.08198 * 353.77071 * 14 13 2 16 16 C 1.38061 * 119.92358 * 180.02562 * 15 14 13 17 17 C 1.38327 * 120.07613 * 359.97438 * 16 15 14 18 18 C 1.38276 * 120.16213 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.95836 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47223 * 269.97635 * 19 18 17 21 21 C 1.38099 * 120.08354 * 359.97438 * 18 17 16 22 22 H 1.08999 * 109.47732 * 174.57952 * 1 2 3 23 23 H 1.09003 * 109.47294 * 294.58416 * 1 2 3 24 24 H 1.09003 * 109.46658 * 54.58210 * 1 2 3 25 25 H 1.09000 * 109.47228 * 295.00434 * 4 2 1 26 26 H 1.09001 * 109.46880 * 55.00478 * 4 2 1 27 27 H 0.97003 * 119.99591 * 179.97438 * 8 7 5 28 28 H 1.08001 * 120.03579 * 359.74742 * 15 14 13 29 29 H 1.07999 * 119.96133 * 179.97438 * 16 15 14 30 30 H 1.08003 * 119.91790 * 180.02562 * 17 16 15 31 31 H 1.08999 * 109.46876 * 29.98072 * 19 18 17 32 32 H 1.09002 * 109.47001 * 149.98020 * 19 18 17 33 33 H 0.96704 * 113.99787 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.04624 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1929 -2.3583 8 7 3.5762 -1.8363 -3.3004 9 14 6.0921 -1.0616 -2.4366 10 1 6.6838 -1.6886 -1.2275 11 1 6.5869 -1.7606 -3.6497 12 1 6.4854 0.3691 -2.4951 13 16 2.1346 -0.8551 1.4811 14 6 1.7106 0.2561 2.7811 15 6 1.1832 1.5072 2.4840 16 6 0.8526 2.3755 3.5052 17 6 1.0453 2.0014 4.8229 18 6 1.5698 0.7575 5.1223 19 6 1.7773 0.3544 6.5596 20 8 3.0870 0.7427 6.9789 21 6 1.9028 -0.1163 4.1061 22 1 -0.3634 -1.0230 -0.0971 23 1 -0.3634 0.4275 0.9345 24 1 -0.3633 0.5956 -0.8375 25 1 1.7515 -1.7716 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.0606 -2.2425 -4.0362 28 1 1.0363 1.8015 1.4552 29 1 0.4431 3.3480 3.2749 30 1 0.7854 2.6825 5.6197 31 1 1.0340 0.8475 7.1861 32 1 1.6715 -0.7265 6.6526 33 1 3.2901 0.5144 7.8964 34 1 2.3120 -1.0878 4.3407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695807134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:17 Heat of formation + Delta-G solvation = -42.112766 kcal Electronic energy + Delta-G solvation = -15690.352750 eV Core-core repulsion = 13099.706230 eV Total energy + Delta-G solvation = -2590.646520 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.14454 -36.67166 -34.71651 -32.30750 -31.44631 -30.79072 -27.54344 -25.94961 -23.35080 -22.81231 -21.36974 -20.45817 -17.59045 -17.03580 -16.34704 -16.05190 -15.51428 -14.83257 -14.57084 -14.17215 -13.84423 -13.45240 -13.14257 -12.85208 -12.40800 -12.14470 -11.87063 -11.79348 -11.50690 -11.01264 -10.86928 -10.78494 -10.54379 -10.33939 -10.17576 -9.54425 -9.47585 -9.25863 -9.13018 -8.76336 -8.38165 -6.77502 -6.03411 -4.05142 1.35918 1.50069 2.19509 3.18277 3.35549 3.38866 3.43346 3.71810 4.40459 4.45904 4.86709 4.91046 5.15125 5.21046 5.29552 5.34005 5.46839 5.59744 5.66898 5.69193 5.93102 5.95221 6.10463 6.29129 6.48381 6.52450 6.54801 6.63520 6.67457 7.04589 7.45279 7.47169 7.55242 7.93612 8.30187 8.99217 9.59058 11.07805 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.005219 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.542991 B = 5363.415788 C = 5951.002871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 H 0.082 0.918 4 C 0.040 3.960 5 C -0.520 4.520 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.277 1.277 13 S -0.086 6.086 14 C -0.081 4.081 15 C -0.132 4.132 16 C -0.104 4.104 17 C -0.122 4.122 18 C -0.081 4.081 19 C 0.120 3.880 20 O -0.566 6.566 21 C -0.090 4.090 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.027 0.973 26 H 0.036 0.964 27 H 0.262 0.738 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.377 0.623 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 5.321 16.750 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 H 0.100 0.900 4 C 0.002 3.998 5 C -0.558 4.558 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.202 1.202 13 S 0.162 5.838 14 C -0.195 4.195 15 C -0.157 4.157 16 C -0.124 4.124 17 C -0.143 4.143 18 C -0.083 4.083 19 C 0.042 3.958 20 O -0.371 6.371 21 C -0.114 4.114 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.224 0.776 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.219 4.278 15.851 17.556 hybrid contribution 0.377 1.095 0.337 1.206 sum -5.842 5.373 16.187 18.028 Atomic orbital electron populations 1.22179 0.94744 1.02715 1.01133 1.23718 0.96697 1.02247 0.96684 0.90003 1.19029 0.96566 0.95600 0.88637 1.21199 0.91450 1.34872 1.08288 0.91948 1.24971 0.98507 0.95109 0.95539 1.69942 1.35748 1.35810 1.12020 0.86637 0.85619 0.78293 0.77435 1.20009 1.21327 1.20220 1.85937 1.73554 1.27178 0.97098 1.22275 1.00803 0.98256 0.98117 1.21365 1.00986 0.93346 0.99991 1.20996 0.99781 0.99102 0.92525 1.20882 1.01383 0.95625 0.96440 1.19432 1.00283 0.94867 0.93724 1.20966 0.84539 0.98356 0.91906 1.86616 1.32741 1.84430 1.33356 1.20610 1.00541 0.99887 0.90392 0.91817 0.93178 0.91995 0.95476 0.94589 0.92865 0.85352 0.86047 0.86419 0.92895 0.92764 0.77625 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.72 37.16 0.32 -2.18 16 2 C -0.06 -1.32 1.98 -26.73 -0.05 -1.37 16 3 H 0.08 1.65 6.83 -51.92 -0.35 1.30 16 4 C 0.04 1.00 4.45 -27.88 -0.12 0.88 16 5 C -0.52 -14.43 8.53 -34.44 -0.29 -14.73 16 6 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 S -0.09 -1.73 20.61 -107.50 -2.22 -3.95 16 14 C -0.08 -1.41 5.97 -39.03 -0.23 -1.64 16 15 C -0.13 -2.09 8.03 -39.37 -0.32 -2.41 16 16 C -0.10 -1.41 10.04 -39.61 -0.40 -1.81 16 17 C -0.12 -1.58 9.70 -39.53 -0.38 -1.96 16 18 C -0.08 -1.12 5.51 -104.66 -0.58 -1.69 16 19 C 0.12 1.25 7.17 36.01 0.26 1.51 16 20 O -0.57 -6.33 13.64 -35.23 -0.48 -6.81 16 21 C -0.09 -1.41 9.45 -39.37 -0.37 -1.79 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.05 0.76 6.12 -51.93 -0.32 0.44 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.13 2.00 5.01 -52.49 -0.26 1.74 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 31 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.38 2.15 9.12 45.56 0.42 2.56 16 34 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 299.30 15.07 4.51 4.51 Total: -1.00 -31.69 299.30 -8.59 -40.28 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.85 Total: 0.51 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -2.26 Total: -25.57 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.48 Total: -6.81 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.22 Total: -3.95 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.69 -8.59 -40.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695807134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.834 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds