Wall clock time and date at job start Mon Mar 30 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47054 * 2 1 4 4 C 1.53001 * 109.46932 * 239.99522 * 2 1 3 5 5 C 1.50703 * 109.46892 * 175.00016 * 4 2 1 6 6 H 1.07997 * 119.99605 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99658 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00113 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99611 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47006 * 60.00069 * 9 7 5 11 11 H 1.48498 * 109.46862 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.46946 * 300.00317 * 9 7 5 13 13 S 1.81397 * 109.46874 * 120.00021 * 2 1 3 14 14 C 1.76197 * 102.99958 * 290.09247 * 13 2 1 15 15 C 1.38993 * 120.08198 * 353.77071 * 14 13 2 16 16 C 1.38061 * 119.92358 * 180.02562 * 15 14 13 17 17 C 1.38327 * 120.07613 * 359.97438 * 16 15 14 18 18 C 1.38276 * 120.16213 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.95836 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47223 * 269.97635 * 19 18 17 21 21 C 1.38099 * 120.08354 * 359.97438 * 18 17 16 22 22 H 1.08999 * 109.47732 * 174.57952 * 1 2 3 23 23 H 1.09003 * 109.47294 * 294.58416 * 1 2 3 24 24 H 1.09003 * 109.46658 * 54.58210 * 1 2 3 25 25 H 1.09000 * 109.47228 * 295.00434 * 4 2 1 26 26 H 1.09001 * 109.46880 * 55.00478 * 4 2 1 27 27 H 0.97003 * 119.99591 * 179.97438 * 8 7 5 28 28 H 1.08001 * 120.03579 * 359.74742 * 15 14 13 29 29 H 1.07999 * 119.96133 * 179.97438 * 16 15 14 30 30 H 1.08003 * 119.91790 * 180.02562 * 17 16 15 31 31 H 1.08999 * 109.46876 * 29.98072 * 19 18 17 32 32 H 1.09002 * 109.47001 * 149.98020 * 19 18 17 33 33 H 0.96704 * 113.99787 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.04624 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1929 -2.3583 8 7 3.5762 -1.8363 -3.3004 9 14 6.0921 -1.0616 -2.4366 10 1 6.6838 -1.6886 -1.2275 11 1 6.5869 -1.7606 -3.6497 12 1 6.4854 0.3691 -2.4951 13 16 2.1346 -0.8551 1.4811 14 6 1.7106 0.2561 2.7811 15 6 1.1832 1.5072 2.4840 16 6 0.8526 2.3755 3.5052 17 6 1.0453 2.0014 4.8229 18 6 1.5698 0.7575 5.1223 19 6 1.7773 0.3544 6.5596 20 8 3.0870 0.7427 6.9789 21 6 1.9028 -0.1163 4.1061 22 1 -0.3634 -1.0230 -0.0971 23 1 -0.3634 0.4275 0.9345 24 1 -0.3633 0.5956 -0.8375 25 1 1.7515 -1.7716 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.0606 -2.2425 -4.0362 28 1 1.0363 1.8015 1.4552 29 1 0.4431 3.3480 3.2749 30 1 0.7854 2.6825 5.6197 31 1 1.0340 0.8475 7.1861 32 1 1.6715 -0.7265 6.6526 33 1 3.2901 0.5144 7.8964 34 1 2.3120 -1.0878 4.3407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695807134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:17 Heat of formation + Delta-G solvation = -62.079885 kcal Electronic energy + Delta-G solvation = -15691.218589 eV Core-core repulsion = 13099.706230 eV Total energy + Delta-G solvation = -2591.512359 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21685 -37.51495 -36.52862 -34.21419 -32.62126 -31.92321 -29.42494 -26.89545 -25.29060 -24.00657 -22.49134 -22.08044 -18.57260 -18.35578 -18.18922 -17.41021 -16.63550 -16.45720 -16.17717 -15.36498 -14.90144 -14.59293 -14.46794 -14.43872 -13.86771 -13.60117 -13.32590 -13.21165 -13.05541 -12.67538 -12.57104 -12.41013 -12.05121 -11.80535 -11.47861 -11.27286 -10.96341 -10.82136 -10.59203 -10.53275 -9.87290 -8.27244 -8.21430 -6.29658 0.23746 0.37001 0.72242 1.38589 1.41149 1.48909 1.69838 2.40232 2.65166 3.13490 3.57707 3.91804 3.98897 4.07998 4.13353 4.14942 4.31901 4.41341 4.48480 4.53730 4.63571 4.82247 4.88402 4.94371 5.03920 5.15091 5.34170 5.36056 5.44376 5.48123 5.57143 5.75475 5.97498 6.16870 6.81546 6.94595 7.38008 8.90053 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.005219 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.542991 B = 5363.415788 C = 5951.002871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 H 0.081 0.919 4 C 0.046 3.954 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.267 1.267 13 S -0.143 6.143 14 C -0.095 4.095 15 C -0.145 4.145 16 C -0.102 4.102 17 C -0.114 4.114 18 C -0.087 4.087 19 C 0.120 3.880 20 O -0.591 6.591 21 C -0.104 4.104 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.000 1.000 26 H 0.019 0.981 27 H 0.264 0.736 28 H 0.126 0.874 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 7.105 19.112 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.179 4.179 3 H 0.099 0.901 4 C 0.008 3.992 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.781 3.219 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.192 1.192 13 S 0.103 5.897 14 C -0.208 4.208 15 C -0.169 4.169 16 C -0.121 4.121 17 C -0.135 4.135 18 C -0.089 4.089 19 C 0.043 3.957 20 O -0.400 6.400 21 C -0.128 4.128 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.018 0.982 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.250 0.750 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.461 6.080 18.250 20.292 hybrid contribution 0.413 0.601 -0.236 0.766 sum -6.049 6.680 18.015 20.143 Atomic orbital electron populations 1.22089 0.92044 1.02891 1.02707 1.23432 0.98802 1.01055 0.94627 0.90109 1.18824 0.95474 0.94369 0.90520 1.21514 0.92937 1.34442 1.08006 0.92332 1.25808 1.03186 0.94844 0.95265 1.70057 1.37524 1.36812 1.12683 0.85636 0.80068 0.78694 0.77531 1.19778 1.20599 1.19218 1.85929 1.75414 1.29384 0.98943 1.22110 1.03158 0.98335 0.97206 1.21480 1.01466 0.93244 1.00751 1.21375 0.98741 0.99823 0.92194 1.21360 0.99380 0.95576 0.97158 1.19889 0.99170 0.94720 0.95083 1.21035 0.85110 0.99394 0.90183 1.86537 1.33125 1.84741 1.35600 1.20765 1.01081 1.00558 0.90395 0.92319 0.91232 0.90658 0.98201 0.96334 0.92737 0.85650 0.82912 0.82991 0.89852 0.91792 0.74952 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 8.72 71.98 0.63 -4.02 16 2 C -0.05 -2.11 1.98 30.60 0.06 -2.05 16 3 H 0.08 3.32 6.83 -2.39 -0.02 3.31 16 4 C 0.05 2.41 4.45 29.85 0.13 2.55 16 5 C -0.53 -30.30 8.53 25.60 0.22 -30.08 16 6 H 0.06 3.32 7.60 -2.91 -0.02 3.30 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 9 Si 0.96 45.41 29.54 68.60 2.03 47.43 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 S -0.14 -5.93 20.61 -56.49 -1.16 -7.10 16 14 C -0.09 -3.28 5.97 22.62 0.14 -3.14 16 15 C -0.15 -4.40 8.03 22.41 0.18 -4.22 16 16 C -0.10 -2.42 10.04 22.25 0.22 -2.19 16 17 C -0.11 -2.51 9.70 22.30 0.22 -2.29 16 18 C -0.09 -2.15 5.51 -19.89 -0.11 -2.26 16 19 C 0.12 2.09 7.17 71.24 0.51 2.61 16 20 O -0.59 -11.43 13.64 -148.98 -2.03 -13.46 16 21 C -0.10 -3.19 9.45 22.41 0.21 -2.98 16 22 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.07 2.06 6.12 -2.39 -0.01 2.04 16 24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.13 3.79 5.01 -2.91 -0.01 3.78 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.08 0.96 8.08 -2.39 -0.02 0.95 16 32 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 33 H 0.40 3.33 9.12 -74.05 -0.68 2.65 16 34 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -69.62 299.30 2.40 -67.22 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.42 Total: 9.34 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 2.87 Total: -47.20 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -2.03 Total: -13.46 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -1.16 Total: -7.10 kcal Total: -69.62 2.40 -67.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695807134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.140 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds