Wall clock time and date at job start Mon Mar 30 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38355 * 119.90871 * 2 1 4 4 C 1.38556 * 120.28172 * 180.02562 * 3 2 1 5 5 F 1.35095 * 119.95410 * 179.97438 * 4 3 2 6 6 C 1.38204 * 120.09513 * 359.97438 * 4 3 2 7 7 C 1.39586 * 119.81796 * 0.02562 * 6 4 3 8 8 C 1.47728 * 120.13312 * 180.27541 * 7 6 4 9 9 O 1.21466 * 120.00156 * 179.72288 * 8 7 6 10 10 O 1.34710 * 120.00397 * 359.72018 * 8 7 6 11 11 C 1.45201 * 117.00387 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.46946 * 330.00111 * 11 10 8 13 13 C 1.53003 * 109.47109 * 90.00006 * 11 10 8 14 14 C 1.50698 * 109.47103 * 209.99878 * 11 10 8 15 15 H 1.07998 * 120.00168 * 0.02562 * 14 11 10 16 16 C 1.37874 * 119.99787 * 179.97438 * 14 11 10 17 17 N 1.31520 * 120.00071 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 120.00360 * 0.02562 * 16 14 11 19 19 H 1.48494 * 109.47102 * 90.00004 * 18 16 14 20 20 H 1.48498 * 109.47159 * 210.00291 * 18 16 14 21 21 H 1.48500 * 109.46653 * 329.99802 * 18 16 14 22 22 C 1.37923 * 119.91459 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47025 * 269.97938 * 1 2 3 24 24 H 1.08995 * 109.47459 * 29.98104 * 1 2 3 25 25 H 1.09004 * 109.46979 * 149.98271 * 1 2 3 26 26 H 1.08001 * 119.85957 * 359.97438 * 3 2 1 27 27 H 1.07994 * 120.08577 * 180.02562 * 6 4 3 28 28 H 1.08999 * 109.46843 * 59.99933 * 13 11 10 29 29 H 1.08994 * 109.47209 * 180.02562 * 13 11 10 30 30 H 1.09003 * 109.46871 * 299.99842 * 13 11 10 31 31 H 0.97001 * 119.99808 * 180.02562 * 17 16 14 32 32 H 1.08003 * 120.04887 * 359.95543 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1993 0.0000 4 6 3.5824 1.2083 -0.0005 5 9 4.2493 2.3832 -0.0011 6 6 4.2831 0.0171 -0.0005 7 6 3.5912 -1.1952 -0.0005 8 6 4.3333 -2.4726 0.0056 9 8 3.7288 -3.5261 0.0107 10 8 5.6804 -2.4691 0.0055 11 6 6.3430 -3.7611 0.0112 12 1 5.7170 -4.4882 0.5282 13 6 6.5757 -4.2212 -1.4294 14 6 7.6672 -3.6434 0.7209 15 1 7.9793 -2.6928 1.1276 16 6 8.4796 -4.7496 0.8522 17 7 9.6350 -4.6470 1.4721 18 14 7.9395 -6.3940 0.1495 19 1 8.4197 -6.5158 -1.2504 20 1 8.5122 -7.4936 0.9668 21 1 6.4572 -6.4796 0.1737 22 6 2.1948 -1.1955 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8899 -0.5141 26 1 1.6530 2.1324 -0.0004 27 1 5.3631 0.0243 -0.0005 28 1 7.2018 -3.4940 -1.9464 29 1 7.0727 -5.1912 -1.4252 30 1 5.6179 -4.3063 -1.9428 31 1 10.2068 -5.4252 1.5640 32 1 1.6542 -2.1305 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744136125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:37 Heat of formation + Delta-G solvation = -110.138707 kcal Electronic energy + Delta-G solvation = -17864.895642 eV Core-core repulsion = 14705.086120 eV Total energy + Delta-G solvation = -3159.809522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.96539 -40.15162 -38.71703 -35.97822 -33.43764 -32.90331 -31.01109 -30.47632 -27.28440 -25.37141 -24.69842 -22.00791 -21.58472 -19.83836 -17.85973 -16.97837 -16.70249 -16.28925 -16.00776 -15.76081 -15.62213 -15.21288 -14.50217 -13.82727 -13.59857 -13.50269 -13.13355 -12.81369 -12.38705 -12.31685 -12.12638 -11.96916 -11.68593 -11.57640 -11.50236 -10.92977 -10.28266 -10.13958 -9.85011 -9.66823 -9.17407 -9.12992 -8.81603 -8.71711 -6.25381 -4.28353 0.58080 1.01847 2.72394 3.16653 3.25356 3.29257 3.31363 3.64682 4.04646 4.23946 4.46710 4.69294 4.95666 4.99089 5.05540 5.14869 5.27072 5.34857 5.52457 5.69286 5.87144 5.89751 6.09245 6.13587 6.18703 6.26674 6.37757 6.54807 6.67004 6.96038 7.26981 7.44595 8.14108 8.49617 8.80890 9.31066 10.86638 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033303 B = 0.005275 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.568580 B = 5306.312570 C = 5911.924468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C -0.130 4.130 4 C 0.091 3.909 5 F -0.136 7.136 6 C -0.102 4.102 7 C -0.080 4.080 8 C 0.498 3.502 9 O -0.512 6.512 10 O -0.334 6.334 11 C 0.191 3.809 12 H 0.048 0.952 13 C -0.171 4.171 14 C -0.527 4.527 15 H 0.088 0.912 16 C 0.081 3.919 17 N -0.887 5.887 18 Si 0.879 3.121 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.262 1.262 22 C -0.072 4.072 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.156 0.844 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.270 0.730 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.230 9.758 -4.126 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.149 4.149 4 C 0.071 3.929 5 F -0.114 7.114 6 C -0.121 4.121 7 C -0.082 4.082 8 C 0.342 3.658 9 O -0.404 6.404 10 O -0.249 6.249 11 C 0.138 3.862 12 H 0.066 0.934 13 C -0.228 4.228 14 C -0.564 4.564 15 H 0.106 0.894 16 C -0.123 4.123 17 N -0.524 5.524 18 Si 0.708 3.292 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.187 1.187 22 C -0.090 4.090 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.156 0.844 27 H 0.174 0.826 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.142 9.368 -4.055 19.099 hybrid contribution 0.133 -0.816 -0.373 0.907 sum -16.009 8.552 -4.428 18.682 Atomic orbital electron populations 1.20802 0.89849 1.03336 1.02932 1.19639 0.96687 0.91628 0.99392 1.21208 0.92240 0.99404 1.02038 1.17509 0.90087 0.81241 1.04032 1.91521 1.80726 1.45200 1.94002 1.21583 1.02334 0.90065 0.98087 1.19151 0.93209 0.91218 1.04573 1.20945 0.83014 0.88471 0.73376 1.90772 1.70111 1.33115 1.46353 1.86568 1.17629 1.39116 1.81611 1.20994 0.93054 0.78282 0.93887 0.93443 1.22533 1.00153 1.01314 0.98779 1.20764 0.99819 0.99033 1.36802 0.89412 1.24722 0.94479 0.98439 0.94633 1.69837 1.10211 1.30844 1.41489 0.86971 0.79824 0.83633 0.78768 1.19938 1.21613 1.18697 1.21237 0.92243 0.98885 0.96644 0.90576 0.91125 0.90851 0.84365 0.82650 0.91663 0.92411 0.94343 0.92007 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.07 -0.76 5.87 -104.70 -0.61 -1.37 16 3 C -0.13 -1.36 9.67 -39.42 -0.38 -1.74 16 4 C 0.09 1.16 7.29 -39.48 -0.29 0.87 16 5 F -0.14 -1.78 17.26 2.25 0.04 -1.74 16 6 C -0.10 -1.49 9.60 -39.09 -0.38 -1.87 16 7 C -0.08 -1.27 5.87 -104.99 -0.62 -1.89 16 8 C 0.50 10.05 7.87 34.61 0.27 10.32 16 9 O -0.51 -11.27 15.60 -19.24 -0.30 -11.57 16 10 O -0.33 -7.60 9.12 -40.52 -0.37 -7.97 16 11 C 0.19 4.81 2.16 -27.88 -0.06 4.75 16 12 H 0.05 1.25 6.22 -51.93 -0.32 0.93 16 13 C -0.17 -3.86 9.03 37.16 0.34 -3.53 16 14 C -0.53 -15.01 9.48 -34.44 -0.33 -15.34 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.08 2.30 5.45 -17.82 -0.10 2.21 16 17 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 18 Si 0.88 21.49 24.37 -169.99 -4.14 17.35 16 19 H -0.27 -6.39 6.87 56.52 0.39 -6.00 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 22 C -0.07 -0.93 9.24 -39.17 -0.36 -1.30 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 25 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 27 H 0.16 2.35 7.61 -52.49 -0.40 1.95 16 28 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.14 1.78 7.65 -52.48 -0.40 1.38 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -31.06 282.12 -5.33 -36.39 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.43 Total: -1.59 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.15 Total: -9.32 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.77 Total: -25.79 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.67 Total: -19.54 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.35 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.06 -5.33 -36.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744136125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.752 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds