Wall clock time and date at job start Mon Mar 30 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38355 * 119.90871 * 2 1 4 4 C 1.38556 * 120.28172 * 180.02562 * 3 2 1 5 5 F 1.35095 * 119.95410 * 179.97438 * 4 3 2 6 6 C 1.38204 * 120.09513 * 359.97438 * 4 3 2 7 7 C 1.39586 * 119.81796 * 0.02562 * 6 4 3 8 8 C 1.47728 * 120.13312 * 180.27541 * 7 6 4 9 9 O 1.21466 * 120.00156 * 179.72288 * 8 7 6 10 10 O 1.34710 * 120.00397 * 359.72018 * 8 7 6 11 11 C 1.45201 * 117.00387 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.46946 * 330.00111 * 11 10 8 13 13 C 1.53003 * 109.47109 * 90.00006 * 11 10 8 14 14 C 1.50698 * 109.47103 * 209.99878 * 11 10 8 15 15 H 1.07998 * 120.00168 * 0.02562 * 14 11 10 16 16 C 1.37874 * 119.99787 * 179.97438 * 14 11 10 17 17 N 1.31520 * 120.00071 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 120.00360 * 0.02562 * 16 14 11 19 19 H 1.48494 * 109.47102 * 90.00004 * 18 16 14 20 20 H 1.48498 * 109.47159 * 210.00291 * 18 16 14 21 21 H 1.48500 * 109.46653 * 329.99802 * 18 16 14 22 22 C 1.37923 * 119.91459 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47025 * 269.97938 * 1 2 3 24 24 H 1.08995 * 109.47459 * 29.98104 * 1 2 3 25 25 H 1.09004 * 109.46979 * 149.98271 * 1 2 3 26 26 H 1.08001 * 119.85957 * 359.97438 * 3 2 1 27 27 H 1.07994 * 120.08577 * 180.02562 * 6 4 3 28 28 H 1.08999 * 109.46843 * 59.99933 * 13 11 10 29 29 H 1.08994 * 109.47209 * 180.02562 * 13 11 10 30 30 H 1.09003 * 109.46871 * 299.99842 * 13 11 10 31 31 H 0.97001 * 119.99808 * 180.02562 * 17 16 14 32 32 H 1.08003 * 120.04887 * 359.95543 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1993 0.0000 4 6 3.5824 1.2083 -0.0005 5 9 4.2493 2.3832 -0.0011 6 6 4.2831 0.0171 -0.0005 7 6 3.5912 -1.1952 -0.0005 8 6 4.3333 -2.4726 0.0056 9 8 3.7288 -3.5261 0.0107 10 8 5.6804 -2.4691 0.0055 11 6 6.3430 -3.7611 0.0112 12 1 5.7170 -4.4882 0.5282 13 6 6.5757 -4.2212 -1.4294 14 6 7.6672 -3.6434 0.7209 15 1 7.9793 -2.6928 1.1276 16 6 8.4796 -4.7496 0.8522 17 7 9.6350 -4.6470 1.4721 18 14 7.9395 -6.3940 0.1495 19 1 8.4197 -6.5158 -1.2504 20 1 8.5122 -7.4936 0.9668 21 1 6.4572 -6.4796 0.1737 22 6 2.1948 -1.1955 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8899 -0.5141 26 1 1.6530 2.1324 -0.0004 27 1 5.3631 0.0243 -0.0005 28 1 7.2018 -3.4940 -1.9464 29 1 7.0727 -5.1912 -1.4252 30 1 5.6179 -4.3063 -1.9428 31 1 10.2068 -5.4252 1.5640 32 1 1.6542 -2.1305 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744136125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:36 Heat of formation + Delta-G solvation = -128.553787 kcal Electronic energy + Delta-G solvation = -17865.694180 eV Core-core repulsion = 14705.086120 eV Total energy + Delta-G solvation = -3160.608060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.99133 -41.65195 -39.92877 -37.72743 -35.36675 -34.04626 -32.67378 -31.83612 -28.06407 -27.40065 -26.09755 -23.27510 -22.99555 -21.44190 -19.41605 -18.64453 -18.32237 -17.42485 -17.28638 -17.06966 -16.99966 -16.63472 -16.25250 -15.12065 -14.74843 -14.50858 -14.43601 -14.34518 -14.27703 -13.80896 -13.54732 -13.08944 -12.89029 -12.74242 -12.71989 -12.58051 -12.26582 -11.82337 -11.73421 -11.49415 -11.27642 -10.86278 -10.13448 -9.80485 -8.46786 -6.56675 -0.54672 0.01932 1.22939 1.30502 1.37353 1.40236 1.72159 2.18263 2.48203 2.85790 3.01915 3.48191 3.66298 3.94597 3.97272 4.09884 4.17842 4.35221 4.39905 4.49261 4.63649 4.69354 4.81039 4.88955 4.92145 5.10334 5.14334 5.27394 5.29149 5.32960 5.52673 5.71499 6.07477 6.46985 6.72836 7.07858 8.69261 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033303 B = 0.005275 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.568580 B = 5306.312570 C = 5911.924468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.060 4.060 3 C -0.108 4.108 4 C 0.085 3.915 5 F -0.139 7.139 6 C -0.116 4.116 7 C -0.104 4.104 8 C 0.496 3.504 9 O -0.535 6.535 10 O -0.348 6.348 11 C 0.193 3.807 12 H 0.035 0.965 13 C -0.164 4.164 14 C -0.543 4.543 15 H 0.046 0.954 16 C 0.032 3.968 17 N -0.929 5.929 18 Si 0.941 3.059 19 H -0.249 1.249 20 H -0.282 1.282 21 H -0.256 1.256 22 C -0.070 4.070 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.177 0.823 27 H 0.137 0.863 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.276 0.724 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.164 10.147 -5.256 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.060 4.060 3 C -0.126 4.126 4 C 0.066 3.934 5 F -0.117 7.117 6 C -0.135 4.135 7 C -0.106 4.106 8 C 0.342 3.658 9 O -0.428 6.428 10 O -0.264 6.264 11 C 0.139 3.861 12 H 0.052 0.948 13 C -0.221 4.221 14 C -0.580 4.580 15 H 0.064 0.936 16 C -0.168 4.168 17 N -0.567 5.567 18 Si 0.766 3.234 19 H -0.174 1.174 20 H -0.208 1.208 21 H -0.180 1.180 22 C -0.089 4.089 23 H 0.109 0.891 24 H 0.113 0.887 25 H 0.098 0.902 26 H 0.195 0.805 27 H 0.155 0.845 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.085 9.782 -5.194 22.066 hybrid contribution 0.971 -0.764 0.050 1.237 sum -18.114 9.018 -5.144 20.878 Atomic orbital electron populations 1.20931 0.86651 1.04944 1.04293 1.20044 0.98655 0.90277 0.96994 1.21639 0.91005 1.01092 0.98896 1.17586 0.91084 0.80330 1.04439 1.91516 1.81065 1.45080 1.94080 1.21449 1.01733 0.90898 0.99454 1.18953 0.94126 0.89238 1.08246 1.21682 0.81887 0.90035 0.72214 1.90736 1.70015 1.34315 1.47698 1.86559 1.19613 1.37853 1.82334 1.20718 0.91218 0.79155 0.95044 0.94758 1.22422 1.01438 1.01307 0.96977 1.20924 1.01769 0.97727 1.37617 0.93603 1.25574 0.94229 1.02368 0.94671 1.69960 1.11569 1.32441 1.42768 0.85964 0.79728 0.78484 0.79217 1.17438 1.20814 1.18050 1.21418 0.90842 1.00472 0.96124 0.89139 0.88738 0.90155 0.80530 0.84463 0.91133 0.92286 0.92240 0.91432 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 71.23 0.71 -0.31 16 2 C -0.06 -1.02 5.87 -19.91 -0.12 -1.14 16 3 C -0.11 -1.86 9.67 22.37 0.22 -1.64 16 4 C 0.08 2.04 7.29 22.34 0.16 2.21 16 5 F -0.14 -3.47 17.26 44.97 0.78 -2.70 16 6 C -0.12 -3.48 9.60 22.59 0.22 -3.26 16 7 C -0.10 -3.34 5.87 -20.10 -0.12 -3.45 16 8 C 0.50 20.51 7.87 70.33 0.55 21.07 16 9 O -0.54 -23.81 15.60 19.95 0.31 -23.50 16 10 O -0.35 -16.50 9.12 -56.20 -0.51 -17.01 16 11 C 0.19 9.91 2.16 29.85 0.06 9.97 16 12 H 0.03 1.85 6.22 -2.39 -0.01 1.83 16 13 C -0.16 -7.33 9.03 71.98 0.65 -6.68 16 14 C -0.54 -32.27 9.48 25.60 0.24 -32.03 16 15 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 16 C 0.03 1.84 5.45 84.65 0.46 2.30 16 17 N -0.93 -57.16 13.96 21.45 0.30 -56.86 16 18 Si 0.94 44.09 24.37 68.60 1.67 45.76 16 19 H -0.25 -10.73 6.87 99.48 0.68 -10.04 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.26 -11.70 6.53 99.48 0.65 -11.05 16 22 C -0.07 -1.72 9.24 22.54 0.21 -1.51 16 23 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.09 0.49 8.08 -2.39 -0.02 0.47 16 25 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 26 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 27 H 0.14 4.49 7.61 -2.91 -0.02 4.46 16 28 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.06 2.60 3.27 -2.39 -0.01 2.59 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 32 H 0.15 3.44 7.65 -2.91 -0.02 3.42 16 Total: -1.00 -69.78 282.12 6.86 -62.92 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.06 Total: 5.85 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 3.25 Total: -14.47 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.30 Total: -56.86 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.20 Total: -40.51 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.67 Total: 45.76 kcal Total: -69.78 6.86 -62.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744136125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.632 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds