Wall clock time and date at job start Mon Mar 30 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38281 * 119.93328 * 2 1 4 4 C 1.38087 * 120.08921 * 179.70053 * 3 2 1 5 5 C 1.38944 * 119.94673 * 0.52916 * 4 3 2 6 6 N 1.39679 * 120.06474 * 179.74459 * 5 4 3 7 7 C 1.46499 * 120.00084 * 359.72744 * 6 5 4 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47116 * 59.99479 * 14 12 10 16 16 H 1.48490 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46756 * 300.00079 * 14 12 10 18 18 C 1.38861 * 119.86577 * 359.46689 * 5 4 3 19 19 C 1.38244 * 119.91159 * 0.28189 * 18 5 4 20 20 Cl 1.73598 * 119.97398 * 179.97438 * 19 18 5 21 21 H 1.08998 * 109.47314 * 270.02828 * 1 2 3 22 22 H 1.08998 * 109.46611 * 30.02299 * 1 2 3 23 23 H 1.08997 * 109.47020 * 150.02151 * 1 2 3 24 24 H 1.08002 * 119.95740 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.02940 * 180.27533 * 4 3 2 26 26 H 0.97000 * 119.99495 * 179.72113 * 6 5 4 27 27 H 1.09002 * 109.47391 * 59.99811 * 7 6 5 28 28 H 1.09001 * 109.46813 * 299.99868 * 7 6 5 29 29 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 30 30 H 1.08992 * 109.47399 * 59.99666 * 8 7 6 31 31 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 32 32 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 33 33 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 34 34 H 1.08001 * 120.04748 * 180.25363 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5779 1.2021 0.0062 5 6 4.2748 0.0001 0.0014 6 7 5.6716 0.0011 0.0023 7 6 6.4033 1.2703 0.0023 8 6 7.9077 0.9916 0.0028 9 6 8.6718 2.3172 0.0034 10 6 10.1536 2.0428 0.0045 11 1 10.5143 1.0248 0.0051 12 6 11.0489 3.0914 0.0047 13 7 10.6096 4.3310 0.0035 14 14 12.8857 2.7513 0.0053 15 1 13.2453 1.9726 -1.2070 16 1 13.6273 4.0377 0.0061 17 1 13.2445 1.9729 1.2180 18 6 3.5799 -1.2021 0.0015 19 6 2.1975 -1.1993 0.0005 20 17 1.3271 -2.7013 0.0000 21 1 -0.3634 0.0005 1.0276 22 1 -0.3632 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6553 2.1326 -0.0004 25 1 4.1158 2.1386 0.0107 26 1 6.1571 -0.8387 0.0030 27 1 6.1390 1.8421 0.8919 28 1 6.1401 1.8413 -0.8881 29 1 8.1712 0.4204 0.8930 30 1 8.1716 0.4201 -0.8869 31 1 8.4085 2.8888 -0.8865 32 1 8.4078 2.8884 0.8934 33 1 11.2395 5.0687 0.0032 34 1 4.1187 -2.1382 0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042221118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:55 Heat of formation + Delta-G solvation = -8.268302 kcal Electronic energy + Delta-G solvation = -15344.828230 eV Core-core repulsion = 12688.179699 eV Total energy + Delta-G solvation = -2656.648531 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.61429 -36.89359 -35.97125 -33.83929 -32.19312 -30.70449 -30.45398 -27.08920 -25.24899 -23.55367 -22.38856 -20.87664 -20.36153 -17.31498 -16.56424 -15.92559 -15.28090 -14.91999 -14.58259 -14.41119 -14.12148 -14.01652 -13.56156 -12.77371 -12.42823 -12.25361 -12.18742 -11.86660 -11.77976 -11.43254 -11.19280 -10.91464 -10.86752 -10.70899 -10.62402 -10.00933 -9.61969 -9.52339 -9.19318 -8.79035 -8.41483 -7.27862 -6.06621 -4.09662 1.24322 1.50014 2.09028 3.29391 3.34148 3.36149 3.62812 3.73342 4.40923 4.76854 4.94189 5.12788 5.26439 5.29414 5.45705 5.54293 5.56210 5.65161 5.66264 5.82246 5.90546 6.04078 6.18043 6.33015 6.49168 6.52186 6.54187 6.76010 6.91909 7.42327 7.56770 7.69271 7.84330 7.91728 8.33404 8.96565 9.54877 11.04683 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.054828 B = 0.003159 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.564724 B = 8862.493504 C = 9342.006827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.150 4.150 3 C -0.058 4.058 4 C -0.191 4.191 5 C 0.232 3.768 6 N -0.739 5.739 7 C 0.120 3.880 8 C -0.121 4.121 9 C 0.025 3.975 10 C -0.524 4.524 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.195 4.195 19 C 0.015 3.985 20 Cl -0.079 7.079 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.399 0.601 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.631 -9.197 -0.004 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C -0.077 4.077 4 C -0.214 4.214 5 C 0.126 3.874 6 N -0.366 5.366 7 C -0.004 4.004 8 C -0.159 4.159 9 C -0.012 4.012 10 C -0.562 4.562 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.219 4.219 19 C -0.012 4.012 20 Cl -0.051 7.051 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.146 0.854 25 H 0.148 0.852 26 H 0.234 0.766 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.523 -8.934 -0.006 20.565 hybrid contribution 1.287 -0.546 0.009 1.397 sum -17.236 -9.480 0.004 19.671 Atomic orbital electron populations 1.20689 0.90902 1.02661 1.02076 1.19418 0.96281 0.91288 1.08322 1.20707 0.93357 0.96792 0.96868 1.20827 0.94261 0.97068 1.09265 1.17724 0.84386 0.92979 0.92325 1.45062 1.01872 1.09390 1.80238 1.21661 0.93271 0.84618 1.00809 1.21857 0.90965 1.02071 1.00978 1.19018 0.94288 0.90425 0.97514 1.21170 0.91314 0.92651 1.51110 0.92709 1.25021 0.99076 0.95113 0.95180 1.69949 1.34687 0.98240 1.50487 0.86634 0.85123 0.77468 0.78646 1.20209 1.21222 1.20215 1.20342 0.92116 0.97365 1.12096 1.20399 0.91493 0.86030 1.03286 1.98336 1.76846 1.33004 1.96869 0.91653 0.91769 0.91539 0.85435 0.85246 0.76618 0.92361 0.92366 0.92726 0.92719 0.96334 0.96338 0.92838 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.61 36.01 0.35 -0.62 16 2 C -0.15 -1.73 5.89 -104.55 -0.62 -2.35 16 3 C -0.06 -0.67 9.69 -39.62 -0.38 -1.05 16 4 C -0.19 -2.50 9.31 -39.38 -0.37 -2.86 16 5 C 0.23 3.17 6.65 -83.79 -0.56 2.61 16 6 N -0.74 -10.32 5.73 -58.64 -0.34 -10.65 16 7 C 0.12 1.91 4.91 -4.04 -0.02 1.89 16 8 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 9 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 11 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 14 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.20 -2.49 9.68 -39.35 -0.38 -2.87 16 19 C 0.02 0.19 6.31 -39.53 -0.25 -0.06 16 20 Cl -0.08 -0.87 27.28 -51.86 -1.41 -2.29 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 23 H 0.07 0.60 6.89 -51.93 -0.36 0.24 16 24 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 25 H 0.13 1.65 6.73 -52.49 -0.35 1.30 16 26 H 0.40 5.05 8.49 -40.82 -0.35 4.71 16 27 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 28 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 302.99 15.07 4.57 4.57 Total: -1.00 -29.01 302.99 -9.19 -38.20 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.80 Total: 0.11 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -2.92 Total: -20.56 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.40 Total: -36.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.41 Total: -2.29 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.01 -9.19 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.934 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds