Wall clock time and date at job start Mon Mar 30 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38238 * 120.04429 * 2 1 4 4 Cl 1.73598 * 119.97497 * 0.03697 * 3 2 1 5 5 C 1.38383 * 120.04768 * 180.02562 * 3 2 1 6 6 C 1.38280 * 120.13800 * 359.74505 * 5 3 2 7 7 C 1.38089 * 120.08821 * 0.50911 * 6 5 3 8 8 C 1.38870 * 120.04406 * 180.02562 * 2 1 3 9 9 N 1.39669 * 120.06508 * 359.97438 * 8 2 1 10 10 C 1.46904 * 110.99847 * 116.02570 * 9 8 2 11 11 C 1.46902 * 111.00175 * 239.97667 * 9 8 2 12 12 H 1.09000 * 109.47265 * 300.00347 * 11 9 8 13 13 C 1.52996 * 109.46932 * 60.00314 * 11 9 8 14 14 C 1.50704 * 109.47002 * 180.02562 * 11 9 8 15 15 H 1.08001 * 120.00142 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99495 * 180.02562 * 14 11 9 17 17 N 1.31512 * 119.99775 * 180.02562 * 16 14 11 18 18 Si 1.86795 * 120.00283 * 359.97438 * 16 14 11 19 19 H 1.48503 * 109.47213 * 90.00500 * 18 16 14 20 20 H 1.48504 * 109.47333 * 210.00659 * 18 16 14 21 21 H 1.48499 * 109.47168 * 330.00601 * 18 16 14 22 22 H 1.09002 * 109.46788 * 269.98358 * 1 2 3 23 23 H 1.08998 * 109.46555 * 29.98166 * 1 2 3 24 24 H 1.08991 * 109.46900 * 149.97976 * 1 2 3 25 25 H 1.08010 * 119.93121 * 179.97438 * 5 3 2 26 26 H 1.08002 * 119.95991 * 180.27550 * 6 5 3 27 27 H 1.08002 * 120.03036 * 179.77437 * 7 6 5 28 28 H 1.08994 * 109.47295 * 59.99602 * 10 9 8 29 29 H 1.08997 * 109.47396 * 179.97438 * 10 9 8 30 30 H 1.08997 * 109.47013 * 299.99698 * 10 9 8 31 31 H 1.09004 * 109.47206 * 299.99930 * 13 11 9 32 32 H 1.09000 * 109.47119 * 59.99944 * 13 11 9 33 33 H 1.09001 * 109.47380 * 179.97438 * 13 11 9 34 34 H 0.97000 * 120.00012 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1966 0.0000 4 17 1.3317 2.7003 0.0010 5 6 3.5830 1.1967 -0.0005 6 6 4.2773 0.0009 0.0042 7 6 3.5917 -1.1977 -0.0010 8 6 2.2023 -1.2021 -0.0005 9 7 1.5063 -2.4130 -0.0005 10 6 1.7652 -3.1690 -1.2332 11 6 1.8393 -3.2117 1.1866 12 1 2.9086 -3.4232 1.1940 13 6 1.4651 -2.4309 2.4479 14 6 1.0715 -4.5080 1.1514 15 1 0.4027 -4.7174 0.3296 16 6 1.2221 -5.4262 2.1689 17 7 0.5525 -6.5576 2.1380 18 14 2.3783 -5.0637 3.5906 19 1 1.6337 -4.3636 4.6680 20 1 2.9299 -6.3378 4.1174 21 1 3.4904 -4.2013 3.1166 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3632 0.8902 -0.5136 24 1 -0.3633 -0.8897 -0.5141 25 1 4.1219 2.1328 -0.0010 26 1 5.3573 0.0043 0.0083 27 1 4.1350 -2.1312 -0.0010 28 1 2.8317 -3.3789 -1.3135 29 1 1.2115 -4.1075 -1.2070 30 1 1.4447 -2.5817 -2.0937 31 1 2.0207 -1.4934 2.4732 32 1 0.3958 -2.2194 2.4405 33 1 1.7117 -3.0236 3.3288 34 1 0.6582 -7.2034 2.8540 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049819064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:27 Heat of formation + Delta-G solvation = 31.445245 kcal Electronic energy + Delta-G solvation = -16963.501455 eV Core-core repulsion = 14308.575032 eV Total energy + Delta-G solvation = -2654.926422 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.84723 -36.99656 -35.90115 -32.91770 -32.34471 -30.44150 -29.30604 -26.72170 -25.26683 -24.38239 -22.33553 -21.10832 -19.61321 -17.03065 -16.39235 -15.61473 -15.31251 -15.09721 -14.33891 -13.88035 -13.47831 -13.30235 -13.04655 -12.64177 -12.24269 -12.12973 -12.10014 -11.82374 -11.48556 -11.38077 -11.11964 -10.88921 -10.71625 -10.66234 -10.53026 -10.19773 -9.58324 -9.18622 -8.64220 -8.44113 -8.29772 -7.64355 -6.14151 -4.13736 1.34456 1.47853 2.25273 3.22184 3.31907 3.33756 3.78947 4.33168 4.55932 4.99455 5.11451 5.18084 5.27204 5.53129 5.61101 5.88004 5.93428 6.06875 6.08891 6.13757 6.29323 6.37573 6.39771 6.47127 6.49273 6.59705 6.70923 6.79852 6.82662 6.95032 7.17649 7.51153 7.79690 8.04562 8.57154 8.90975 9.46888 10.98168 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.031331 B = 0.006520 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.455733 B = 4293.465796 C = 4379.672481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.059 4.059 3 C -0.034 4.034 4 Cl -0.079 7.079 5 C -0.125 4.125 6 C -0.109 4.109 7 C -0.146 4.146 8 C 0.126 3.874 9 N -0.497 5.497 10 C 0.040 3.960 11 C 0.189 3.811 12 H 0.003 0.997 13 C -0.145 4.145 14 C -0.509 4.509 15 H 0.086 0.914 16 C 0.074 3.926 17 N -0.896 5.896 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.269 1.269 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.018 0.982 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 14.302 -4.465 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.061 4.061 3 C -0.061 4.061 4 Cl -0.050 7.050 5 C -0.144 4.144 6 C -0.128 4.128 7 C -0.166 4.166 8 C 0.031 3.969 9 N -0.218 5.218 10 C -0.106 4.106 11 C 0.084 3.916 12 H 0.020 0.980 13 C -0.202 4.202 14 C -0.547 4.547 15 H 0.104 0.896 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.714 3.286 19 H -0.204 1.204 20 H -0.224 1.224 21 H -0.194 1.194 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.037 0.963 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.257 14.321 -4.355 15.562 hybrid contribution 1.502 0.043 0.978 1.793 sum 5.759 14.364 -3.377 15.840 Atomic orbital electron populations 1.20696 0.89809 1.02987 1.02833 1.19708 0.97264 0.89858 0.99231 1.20667 0.92100 0.86224 1.07151 1.98327 1.77300 1.32343 1.97050 1.20887 0.91854 0.98774 1.02852 1.20880 0.99632 0.91621 1.00663 1.21926 0.95399 0.98628 1.00696 1.18835 0.89805 0.92042 0.96190 1.59661 1.55480 1.02359 1.04329 1.22314 0.99140 0.99312 0.89839 1.19773 0.94888 0.92001 0.84980 0.97963 1.22149 1.01783 0.97887 0.98421 1.20937 1.26149 0.98335 1.09328 0.89631 1.24883 0.95369 0.94896 0.97736 1.69865 1.41542 1.08440 1.33515 0.86925 0.81789 0.76605 0.83298 1.20440 1.22365 1.19448 0.91041 0.92190 0.89579 0.85565 0.85712 0.85703 0.96301 0.88981 0.93193 0.95381 0.91975 0.93875 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.37 36.01 0.34 -1.30 16 2 C -0.06 -0.96 5.90 -104.39 -0.62 -1.58 16 3 C -0.03 -0.50 6.31 -39.53 -0.25 -0.75 16 4 Cl -0.08 -1.02 27.29 -51.86 -1.42 -2.43 16 5 C -0.12 -1.66 9.83 -39.51 -0.39 -2.05 16 6 C -0.11 -1.49 10.04 -39.62 -0.40 -1.89 16 7 C -0.15 -2.39 8.57 -39.38 -0.34 -2.72 16 8 C 0.13 2.25 3.29 -83.79 -0.28 1.97 16 9 N -0.50 -9.96 3.56 -172.68 -0.61 -10.57 16 10 C 0.04 0.75 9.10 60.07 0.55 1.30 16 11 C 0.19 4.35 1.43 -68.86 -0.10 4.26 16 12 H 0.00 0.07 6.18 -51.93 -0.32 -0.25 16 13 C -0.14 -3.21 8.55 37.16 0.32 -2.89 16 14 C -0.51 -13.68 8.46 -34.44 -0.29 -13.97 16 15 H 0.09 2.47 6.65 -52.49 -0.35 2.12 16 16 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 17 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 18 Si 0.88 21.57 24.37 -169.99 -4.14 17.43 16 19 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 20 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 22 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 23 H 0.06 0.81 6.90 -51.93 -0.36 0.45 16 24 H 0.09 1.41 7.46 -51.93 -0.39 1.02 16 25 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 26 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.13 2.05 7.02 -52.49 -0.37 1.69 16 28 H 0.02 0.33 7.34 -51.93 -0.38 -0.05 16 29 H 0.09 1.87 6.10 -51.93 -0.32 1.55 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.56 7.22 -51.93 -0.37 0.19 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 282.97 15.07 4.26 4.26 Total: -1.00 -28.36 282.97 -7.01 -35.37 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.32 Total: -0.57 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -1.55 Total: -17.68 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.16 Total: -36.38 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.14 Total: 17.43 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.42 Total: -2.43 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.36 -7.01 -35.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049819064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.811 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds