Wall clock time and date at job start Mon Mar 30 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38238 * 120.04429 * 2 1 4 4 Cl 1.73598 * 119.97497 * 0.03697 * 3 2 1 5 5 C 1.38383 * 120.04768 * 180.02562 * 3 2 1 6 6 C 1.38280 * 120.13800 * 359.74505 * 5 3 2 7 7 C 1.38089 * 120.08821 * 0.50911 * 6 5 3 8 8 C 1.38870 * 120.04406 * 180.02562 * 2 1 3 9 9 N 1.39669 * 120.06508 * 359.97438 * 8 2 1 10 10 C 1.46904 * 110.99847 * 116.02570 * 9 8 2 11 11 C 1.46902 * 111.00175 * 239.97667 * 9 8 2 12 12 H 1.09000 * 109.47265 * 300.00347 * 11 9 8 13 13 C 1.52996 * 109.46932 * 60.00314 * 11 9 8 14 14 C 1.50704 * 109.47002 * 180.02562 * 11 9 8 15 15 H 1.08001 * 120.00142 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99495 * 180.02562 * 14 11 9 17 17 N 1.31512 * 119.99775 * 180.02562 * 16 14 11 18 18 Si 1.86795 * 120.00283 * 359.97438 * 16 14 11 19 19 H 1.48503 * 109.47213 * 90.00500 * 18 16 14 20 20 H 1.48504 * 109.47333 * 210.00659 * 18 16 14 21 21 H 1.48499 * 109.47168 * 330.00601 * 18 16 14 22 22 H 1.09002 * 109.46788 * 269.98358 * 1 2 3 23 23 H 1.08998 * 109.46555 * 29.98166 * 1 2 3 24 24 H 1.08991 * 109.46900 * 149.97976 * 1 2 3 25 25 H 1.08010 * 119.93121 * 179.97438 * 5 3 2 26 26 H 1.08002 * 119.95991 * 180.27550 * 6 5 3 27 27 H 1.08002 * 120.03036 * 179.77437 * 7 6 5 28 28 H 1.08994 * 109.47295 * 59.99602 * 10 9 8 29 29 H 1.08997 * 109.47396 * 179.97438 * 10 9 8 30 30 H 1.08997 * 109.47013 * 299.99698 * 10 9 8 31 31 H 1.09004 * 109.47206 * 299.99930 * 13 11 9 32 32 H 1.09000 * 109.47119 * 59.99944 * 13 11 9 33 33 H 1.09001 * 109.47380 * 179.97438 * 13 11 9 34 34 H 0.97000 * 120.00012 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1966 0.0000 4 17 1.3317 2.7003 0.0010 5 6 3.5830 1.1967 -0.0005 6 6 4.2773 0.0009 0.0042 7 6 3.5917 -1.1977 -0.0010 8 6 2.2023 -1.2021 -0.0005 9 7 1.5063 -2.4130 -0.0005 10 6 1.7652 -3.1690 -1.2332 11 6 1.8393 -3.2117 1.1866 12 1 2.9086 -3.4232 1.1940 13 6 1.4651 -2.4309 2.4479 14 6 1.0715 -4.5080 1.1514 15 1 0.4027 -4.7174 0.3296 16 6 1.2221 -5.4262 2.1689 17 7 0.5525 -6.5576 2.1380 18 14 2.3783 -5.0637 3.5906 19 1 1.6337 -4.3636 4.6680 20 1 2.9299 -6.3378 4.1174 21 1 3.4904 -4.2013 3.1166 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3632 0.8902 -0.5136 24 1 -0.3633 -0.8897 -0.5141 25 1 4.1219 2.1328 -0.0010 26 1 5.3573 0.0043 0.0083 27 1 4.1350 -2.1312 -0.0010 28 1 2.8317 -3.3789 -1.3135 29 1 1.2115 -4.1075 -1.2070 30 1 1.4447 -2.5817 -2.0937 31 1 2.0207 -1.4934 2.4732 32 1 0.3958 -2.2194 2.4405 33 1 1.7117 -3.0236 3.3288 34 1 0.6582 -7.2034 2.8540 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049819064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:27 Heat of formation + Delta-G solvation = 15.302018 kcal Electronic energy + Delta-G solvation = -16964.201478 eV Core-core repulsion = 14308.575032 eV Total energy + Delta-G solvation = -2655.626445 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14379 -38.33607 -37.11055 -34.80641 -33.60883 -32.24509 -30.60942 -28.02668 -27.05075 -25.96496 -23.79020 -22.36840 -21.16584 -18.90965 -17.73587 -17.17817 -16.85679 -16.33772 -15.86792 -15.31780 -15.13715 -14.78292 -14.36384 -14.16014 -14.01013 -13.65420 -13.29716 -13.22280 -12.89234 -12.73001 -12.59651 -12.41989 -12.26771 -12.13207 -12.05567 -11.68823 -11.47151 -11.17484 -10.75771 -9.58639 -9.51943 -9.20848 -8.29674 -6.32809 0.17246 0.31745 1.16071 1.28637 1.32743 1.42245 2.29239 2.62117 3.02172 3.11215 3.90135 4.05477 4.07005 4.25675 4.41983 4.48578 4.58262 4.64369 4.65821 4.74594 4.78834 4.83395 4.87398 4.93116 5.16322 5.25599 5.35587 5.36431 5.43320 5.51620 5.66737 5.74694 6.02375 6.28915 6.73050 6.79607 7.31474 8.86087 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.031331 B = 0.006520 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.455733 B = 4293.465796 C = 4379.672481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.071 4.071 3 C -0.039 4.039 4 Cl -0.063 7.063 5 C -0.114 4.114 6 C -0.099 4.099 7 C -0.158 4.158 8 C 0.098 3.902 9 N -0.503 5.503 10 C 0.045 3.955 11 C 0.196 3.804 12 H -0.003 1.003 13 C -0.137 4.137 14 C -0.506 4.506 15 H 0.050 0.950 16 C 0.019 3.981 17 N -0.943 5.943 18 Si 0.940 3.060 19 H -0.268 1.268 20 H -0.297 1.297 21 H -0.253 1.253 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.158 0.842 26 H 0.158 0.842 27 H 0.118 0.882 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 17.140 -4.096 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.073 4.073 3 C -0.066 4.066 4 Cl -0.034 7.034 5 C -0.132 4.132 6 C -0.118 4.118 7 C -0.178 4.178 8 C 0.004 3.996 9 N -0.224 5.224 10 C -0.101 4.101 11 C 0.089 3.911 12 H 0.014 0.986 13 C -0.195 4.195 14 C -0.545 4.545 15 H 0.069 0.931 16 C -0.179 4.179 17 N -0.583 5.583 18 Si 0.768 3.232 19 H -0.194 1.194 20 H -0.224 1.224 21 H -0.177 1.177 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.176 0.824 26 H 0.176 0.824 27 H 0.136 0.864 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.180 17.190 -4.002 18.700 hybrid contribution 0.879 -0.736 0.738 1.363 sum 7.059 16.453 -3.264 18.198 Atomic orbital electron populations 1.20637 0.89792 1.02942 1.02501 1.19772 0.97490 0.90160 0.99835 1.20796 0.92881 0.86307 1.06631 1.98336 1.77146 1.31009 1.96935 1.21282 0.91348 0.99994 1.00597 1.21215 1.01256 0.90514 0.98804 1.21961 0.94759 0.99640 1.01477 1.18841 0.90600 0.91128 0.99053 1.59480 1.56504 1.02991 1.03466 1.22235 0.99034 0.98426 0.90417 1.19533 0.93584 0.90878 0.87080 0.98552 1.22019 1.01681 0.98450 0.97306 1.21172 1.25227 1.00184 1.07887 0.93149 1.25652 0.97051 0.94660 1.00513 1.70006 1.43796 1.09758 1.34767 0.85985 0.80299 0.76652 0.80278 1.19435 1.22418 1.17725 0.91517 0.90527 0.91303 0.82449 0.82420 0.86402 0.95735 0.91818 0.91008 0.93349 0.92580 0.94539 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.03 9.37 71.24 0.67 -2.37 16 2 C -0.07 -2.18 5.90 -19.71 -0.12 -2.30 16 3 C -0.04 -1.02 6.31 22.30 0.14 -0.88 16 4 Cl -0.06 -1.43 27.29 -2.72 -0.07 -1.51 16 5 C -0.11 -2.53 9.83 22.31 0.22 -2.31 16 6 C -0.10 -2.31 10.04 22.24 0.22 -2.08 16 7 C -0.16 -4.79 8.57 22.40 0.19 -4.60 16 8 C 0.10 3.36 3.29 38.21 0.13 3.49 16 9 N -0.50 -20.18 3.56 -700.24 -2.49 -22.67 16 10 C 0.05 1.71 9.10 127.69 1.16 2.88 16 11 C 0.20 9.00 1.43 44.17 0.06 9.06 16 12 H 0.00 -0.14 6.18 -2.39 -0.01 -0.15 16 13 C -0.14 -5.91 8.55 71.98 0.62 -5.30 16 14 C -0.51 -28.01 8.46 25.60 0.22 -27.79 16 15 H 0.05 3.08 6.65 -2.91 -0.02 3.06 16 16 C 0.02 1.09 5.45 84.66 0.46 1.55 16 17 N -0.94 -57.75 13.96 21.45 0.30 -57.46 16 18 Si 0.94 44.35 24.37 68.60 1.67 46.02 16 19 H -0.27 -12.17 6.87 99.48 0.68 -11.49 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.25 -11.17 6.53 99.48 0.65 -10.52 16 22 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.08 1.95 6.90 -2.39 -0.02 1.93 16 24 H 0.07 2.26 7.46 -2.39 -0.02 2.24 16 25 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 26 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 27 H 0.12 3.69 7.02 -2.91 -0.02 3.67 16 28 H 0.02 0.87 7.34 -2.39 -0.02 0.85 16 29 H 0.06 2.73 6.10 -2.39 -0.01 2.71 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.05 1.86 7.22 -2.38 -0.02 1.85 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.04 1.60 3.27 -2.39 -0.01 1.60 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -61.72 282.97 4.40 -57.32 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.02 Total: 8.95 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 3.97 Total: -30.66 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.19 Total: -80.13 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.67 Total: 46.02 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.51 kcal Total: -61.72 4.40 -57.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049819064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.623 kcal (2) G-P(sol) polarization free energy of solvation -61.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds