Wall clock time and date at job start Mon Mar 30 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46994 * 2 1 4 4 N 1.46506 * 109.47300 * 120.00250 * 2 1 3 5 5 C 1.37093 * 119.99791 * 296.14681 * 4 2 1 6 6 H 1.07992 * 120.00125 * 319.03096 * 5 4 2 7 7 C 1.38952 * 119.99749 * 139.02406 * 5 4 2 8 8 N 1.31410 * 120.00036 * 158.94285 * 7 5 4 9 9 Si 1.86801 * 120.00272 * 338.95156 * 7 5 4 10 10 H 1.48493 * 109.47486 * 95.31105 * 9 7 5 11 11 H 1.48502 * 109.47026 * 215.31703 * 9 7 5 12 12 H 1.48505 * 109.46722 * 335.31226 * 9 7 5 13 13 C 1.34779 * 119.99935 * 116.14640 * 4 2 1 14 14 O 1.21291 * 119.99970 * 180.02562 * 13 4 2 15 15 C 1.50703 * 120.00031 * 0.02562 * 13 4 2 16 16 C 1.50694 * 109.46888 * 180.02562 * 15 13 4 17 17 C 1.33386 * 125.20821 * 89.99659 * 16 15 13 18 18 C 1.38427 * 114.92304 * 179.97438 * 17 16 15 19 19 C 1.33383 * 114.92101 * 0.02562 * 18 17 16 20 20 S 1.75885 * 109.59470 * 359.75247 * 19 18 17 21 21 H 1.08998 * 109.47098 * 305.09677 * 1 2 3 22 22 H 1.08998 * 109.47255 * 65.10550 * 1 2 3 23 23 H 1.09008 * 109.46905 * 185.10184 * 1 2 3 24 24 H 1.09007 * 109.47114 * 240.00256 * 2 1 3 25 25 H 1.09008 * 109.46955 * 174.26039 * 3 2 1 26 26 H 1.08998 * 109.47506 * 294.26221 * 3 2 1 27 27 H 1.09003 * 109.47237 * 54.26416 * 3 2 1 28 28 H 0.97001 * 120.00251 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47026 * 299.99451 * 15 13 4 30 30 H 1.09001 * 109.47168 * 59.99499 * 15 13 4 31 31 H 1.08001 * 122.53597 * 359.95854 * 17 16 15 32 32 H 1.07997 * 122.53658 * 180.02562 * 18 17 16 33 33 H 1.07996 * 125.20348 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.7536 -0.1781 2.4398 6 1 1.8177 0.8865 2.6099 7 6 1.4026 -1.0282 3.4813 8 7 1.5491 -0.6364 4.7271 9 14 0.7228 -2.7282 3.1108 10 1 1.8255 -3.7219 3.1512 11 1 -0.3015 -3.0837 4.1255 12 1 0.1039 -2.7303 1.7609 13 6 2.7280 -1.8300 1.0740 14 8 3.1319 -2.4021 2.0643 15 6 3.0195 -2.3932 -0.2932 16 6 3.8212 -3.6615 -0.1534 17 6 3.3077 -4.8874 -0.0404 18 6 4.2415 -5.9026 0.0759 19 6 5.5133 -5.5011 0.0579 20 16 5.5774 -3.7525 -0.1211 21 1 -0.3633 0.5909 0.8408 22 1 -0.3634 0.4326 -0.9322 23 1 -0.3633 -1.0237 0.0914 24 1 1.8934 -0.5138 -0.8901 25 1 3.1252 1.4441 0.1028 26 1 1.7630 1.9258 -0.9369 27 1 1.5952 1.9851 0.8342 28 1 1.3037 -1.2297 5.4542 29 1 2.0816 -2.6111 -0.8039 30 1 3.5880 -1.6654 -0.8723 31 1 2.2438 -5.0737 -0.0395 32 1 3.9614 -6.9410 0.1738 33 1 6.3724 -6.1508 0.1364 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057515155.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:53 Heat of formation + Delta-G solvation = 10.072043 kcal Electronic energy + Delta-G solvation = -17055.435331 eV Core-core repulsion = 14401.625803 eV Total energy + Delta-G solvation = -2653.809528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.20373 -37.37684 -35.52194 -32.58914 -31.52696 -30.39801 -27.17833 -26.60643 -24.56768 -22.79833 -21.00374 -19.47284 -18.80622 -17.04974 -16.63791 -15.82683 -15.22857 -15.12603 -14.13307 -13.77924 -13.30002 -13.06701 -13.01726 -12.48637 -12.31145 -12.27569 -12.23685 -11.88410 -11.63552 -11.31522 -11.19407 -10.83041 -10.71151 -10.46722 -10.21540 -10.01501 -9.81409 -8.60199 -8.48098 -8.20201 -8.12224 -7.56364 -6.14767 -3.87700 1.32113 1.96701 2.32329 3.06527 3.33188 3.48217 3.71335 3.89141 4.45419 4.62759 5.07337 5.22218 5.28750 5.43654 5.52195 5.57482 5.72195 5.81523 5.85447 5.88186 5.91898 6.09414 6.35201 6.38848 6.41805 6.45465 6.59960 6.79539 6.82565 6.88886 7.89900 8.03211 8.82685 8.98073 9.49411 9.87518 10.90629 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.009071 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.756147 B = 3085.919643 C = 3677.114904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 C -0.151 4.151 4 N -0.458 5.458 5 C -0.345 4.345 6 H 0.095 0.905 7 C 0.094 3.906 8 N -0.866 5.866 9 Si 0.907 3.093 10 H -0.253 1.253 11 H -0.312 1.312 12 H -0.281 1.281 13 C 0.445 3.555 14 O -0.533 6.533 15 C -0.072 4.072 16 C -0.129 4.129 17 C -0.145 4.145 18 C -0.128 4.128 19 C -0.228 4.228 20 S 0.102 5.898 21 H 0.068 0.932 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 -4.557 -13.402 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 C -0.209 4.209 4 N -0.181 5.181 5 C -0.470 4.470 6 H 0.112 0.888 7 C -0.115 4.115 8 N -0.501 5.501 9 Si 0.738 3.262 10 H -0.179 1.179 11 H -0.241 1.241 12 H -0.207 1.207 13 C 0.234 3.766 14 O -0.414 6.414 15 C -0.115 4.115 16 C -0.247 4.247 17 C -0.175 4.175 18 C -0.159 4.159 19 C -0.363 4.363 20 S 0.365 5.635 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.977 -3.794 -12.796 13.927 hybrid contribution -1.597 -1.863 0.098 2.456 sum 2.380 -5.658 -12.698 14.103 Atomic orbital electron populations 1.22068 0.95741 1.02085 1.01302 1.21144 0.94309 0.93932 0.88898 1.22013 1.01270 0.96372 1.01232 1.43764 1.46230 1.22139 1.05930 1.18689 1.50184 0.94664 0.83483 0.88770 1.25252 0.93154 0.98784 0.94326 1.69769 1.43021 1.38309 0.98992 0.86459 0.77024 0.85948 0.76799 1.17886 1.24129 1.20700 1.20123 0.82003 0.84759 0.89754 1.90559 1.53214 1.59235 1.38420 1.20270 0.99572 0.93102 0.98514 1.23929 0.96004 0.97921 1.06885 1.20008 1.00828 0.91555 1.05117 1.20048 0.92034 1.00298 1.03494 1.25463 1.00897 0.97702 1.12247 1.84056 1.04048 1.03465 1.71900 0.91246 0.93150 0.93095 0.91283 0.92821 0.93099 0.91556 0.91972 0.88558 0.88964 0.84916 0.84787 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.15 37.16 0.34 -2.26 16 2 C 0.12 2.18 3.15 -67.93 -0.21 1.97 16 3 C -0.15 -2.45 8.95 37.15 0.33 -2.12 16 4 N -0.46 -10.75 2.12 -107.73 -0.23 -10.98 16 5 C -0.34 -9.56 8.63 -14.93 -0.13 -9.69 16 6 H 0.09 2.72 7.07 -52.49 -0.37 2.35 16 7 C 0.09 2.78 4.80 -17.47 -0.08 2.69 16 8 N -0.87 -26.78 13.96 55.50 0.77 -26.01 16 9 Si 0.91 24.59 24.82 -169.99 -4.22 20.37 16 10 H -0.25 -7.30 6.29 56.52 0.36 -6.94 16 11 H -0.31 -8.37 7.11 56.52 0.40 -7.97 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 13 C 0.45 10.55 5.91 -10.98 -0.06 10.48 16 14 O -0.53 -14.95 11.41 5.55 0.06 -14.88 16 15 C -0.07 -1.30 4.51 -29.04 -0.13 -1.43 16 16 C -0.13 -2.34 5.00 -36.01 -0.18 -2.52 16 17 C -0.15 -2.50 10.05 -41.21 -0.41 -2.92 16 18 C -0.13 -1.93 10.18 -41.21 -0.42 -2.35 16 19 C -0.23 -3.29 11.23 29.04 0.33 -2.97 16 20 S 0.10 1.65 23.33 -107.50 -2.51 -0.86 16 21 H 0.07 1.28 7.90 -51.93 -0.41 0.87 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 24 H 0.07 1.05 5.78 -51.93 -0.30 0.75 16 25 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.18 7.21 -51.93 -0.37 0.81 16 28 H 0.27 7.94 8.31 -40.82 -0.34 7.60 16 29 H 0.10 1.52 7.86 -51.93 -0.41 1.11 16 30 H 0.09 1.42 7.71 -51.93 -0.40 1.02 16 31 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 286.28 15.07 4.31 4.31 Total: -1.00 -33.73 286.28 -6.85 -40.58 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.41 Total: -1.42 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.64 Total: -11.11 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.55 Total: -36.99 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.06 Total: -14.88 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -4.22 Total: 20.37 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.51 Total: -0.86 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.73 -6.85 -40.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057515155.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.649 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds