Wall clock time and date at job start Mon Mar 30 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46994 * 2 1 4 4 N 1.46506 * 109.47300 * 120.00250 * 2 1 3 5 5 C 1.37093 * 119.99791 * 296.14681 * 4 2 1 6 6 H 1.07992 * 120.00125 * 319.03096 * 5 4 2 7 7 C 1.38952 * 119.99749 * 139.02406 * 5 4 2 8 8 N 1.31410 * 120.00036 * 158.94285 * 7 5 4 9 9 Si 1.86801 * 120.00272 * 338.95156 * 7 5 4 10 10 H 1.48493 * 109.47486 * 95.31105 * 9 7 5 11 11 H 1.48502 * 109.47026 * 215.31703 * 9 7 5 12 12 H 1.48505 * 109.46722 * 335.31226 * 9 7 5 13 13 C 1.34779 * 119.99935 * 116.14640 * 4 2 1 14 14 O 1.21291 * 119.99970 * 180.02562 * 13 4 2 15 15 C 1.50703 * 120.00031 * 0.02562 * 13 4 2 16 16 C 1.50694 * 109.46888 * 180.02562 * 15 13 4 17 17 C 1.33386 * 125.20821 * 89.99659 * 16 15 13 18 18 C 1.38427 * 114.92304 * 179.97438 * 17 16 15 19 19 C 1.33383 * 114.92101 * 0.02562 * 18 17 16 20 20 S 1.75885 * 109.59470 * 359.75247 * 19 18 17 21 21 H 1.08998 * 109.47098 * 305.09677 * 1 2 3 22 22 H 1.08998 * 109.47255 * 65.10550 * 1 2 3 23 23 H 1.09008 * 109.46905 * 185.10184 * 1 2 3 24 24 H 1.09007 * 109.47114 * 240.00256 * 2 1 3 25 25 H 1.09008 * 109.46955 * 174.26039 * 3 2 1 26 26 H 1.08998 * 109.47506 * 294.26221 * 3 2 1 27 27 H 1.09003 * 109.47237 * 54.26416 * 3 2 1 28 28 H 0.97001 * 120.00251 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47026 * 299.99451 * 15 13 4 30 30 H 1.09001 * 109.47168 * 59.99499 * 15 13 4 31 31 H 1.08001 * 122.53597 * 359.95854 * 17 16 15 32 32 H 1.07997 * 122.53658 * 180.02562 * 18 17 16 33 33 H 1.07996 * 125.20348 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.7536 -0.1781 2.4398 6 1 1.8177 0.8865 2.6099 7 6 1.4026 -1.0282 3.4813 8 7 1.5491 -0.6364 4.7271 9 14 0.7228 -2.7282 3.1108 10 1 1.8255 -3.7219 3.1512 11 1 -0.3015 -3.0837 4.1255 12 1 0.1039 -2.7303 1.7609 13 6 2.7280 -1.8300 1.0740 14 8 3.1319 -2.4021 2.0643 15 6 3.0195 -2.3932 -0.2932 16 6 3.8212 -3.6615 -0.1534 17 6 3.3077 -4.8874 -0.0404 18 6 4.2415 -5.9026 0.0759 19 6 5.5133 -5.5011 0.0579 20 16 5.5774 -3.7525 -0.1211 21 1 -0.3633 0.5909 0.8408 22 1 -0.3634 0.4326 -0.9322 23 1 -0.3633 -1.0237 0.0914 24 1 1.8934 -0.5138 -0.8901 25 1 3.1252 1.4441 0.1028 26 1 1.7630 1.9258 -0.9369 27 1 1.5952 1.9851 0.8342 28 1 1.3037 -1.2297 5.4542 29 1 2.0816 -2.6111 -0.8039 30 1 3.5880 -1.6654 -0.8723 31 1 2.2438 -5.0737 -0.0395 32 1 3.9614 -6.9410 0.1738 33 1 6.3724 -6.1508 0.1364 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057515155.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:53 Heat of formation + Delta-G solvation = -11.659287 kcal Electronic energy + Delta-G solvation = -17056.377672 eV Core-core repulsion = 14401.625803 eV Total energy + Delta-G solvation = -2654.751869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97428 -38.63640 -37.24438 -34.61026 -33.00606 -32.13814 -28.65006 -27.92479 -26.37409 -24.15989 -22.56811 -21.23020 -20.09678 -18.88887 -17.97468 -17.53459 -17.07567 -16.51337 -15.85029 -15.53566 -14.88624 -14.83857 -14.51753 -14.06842 -13.88403 -13.74553 -13.53936 -13.24472 -13.15009 -12.84640 -12.62781 -12.52268 -12.28067 -12.10497 -11.74633 -11.67664 -11.61452 -10.71422 -10.41020 -9.59735 -9.48574 -9.33973 -8.38919 -6.08599 0.09081 0.76439 1.12476 1.20661 1.32423 1.51069 1.84554 1.99437 2.47242 2.75782 3.12785 3.72550 3.99873 4.13447 4.20905 4.26078 4.39374 4.47268 4.50935 4.68655 4.73606 4.91135 4.97371 5.08581 5.11486 5.21115 5.39173 5.48252 5.51544 5.60033 5.75820 5.94179 6.81647 6.97216 7.41196 7.94224 8.70028 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.009071 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.756147 B = 3085.919643 C = 3677.114904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.112 3.888 3 C -0.146 4.146 4 N -0.472 5.472 5 C -0.329 4.329 6 H 0.071 0.929 7 C 0.043 3.957 8 N -0.914 5.914 9 Si 0.957 3.043 10 H -0.281 1.281 11 H -0.314 1.314 12 H -0.257 1.257 13 C 0.440 3.560 14 O -0.582 6.582 15 C -0.062 4.062 16 C -0.163 4.163 17 C -0.153 4.153 18 C -0.142 4.142 19 C -0.215 4.215 20 S 0.088 5.912 21 H 0.043 0.957 22 H 0.096 0.904 23 H 0.039 0.961 24 H 0.109 0.891 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.039 0.961 28 H 0.268 0.732 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.137 0.863 32 H 0.162 0.838 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 -5.521 -16.594 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 C -0.204 4.204 4 N -0.194 5.194 5 C -0.456 4.456 6 H 0.088 0.912 7 C -0.161 4.161 8 N -0.552 5.552 9 Si 0.788 3.212 10 H -0.208 1.208 11 H -0.244 1.244 12 H -0.181 1.181 13 C 0.230 3.770 14 O -0.467 6.467 15 C -0.103 4.103 16 C -0.281 4.281 17 C -0.183 4.183 18 C -0.172 4.172 19 C -0.350 4.350 20 S 0.351 5.649 21 H 0.062 0.938 22 H 0.114 0.886 23 H 0.058 0.942 24 H 0.127 0.873 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.959 -4.732 -16.045 17.190 hybrid contribution -1.487 -1.540 1.008 2.366 sum 2.471 -6.272 -15.037 16.479 Atomic orbital electron populations 1.22049 0.94782 1.01308 1.02675 1.21568 0.95199 0.94608 0.87708 1.21978 1.00406 0.95428 1.02541 1.44040 1.46684 1.22565 1.06157 1.18591 1.47993 0.93552 0.85482 0.91180 1.25882 0.94297 1.01451 0.94420 1.69863 1.46120 1.39456 0.99802 0.85619 0.75530 0.82372 0.77649 1.20823 1.24411 1.18141 1.21174 0.80310 0.83857 0.91655 1.90526 1.54679 1.60672 1.40813 1.20233 1.01545 0.93715 0.94853 1.24063 0.96887 0.98186 1.08979 1.20341 1.01618 0.92052 1.04279 1.20357 0.91879 1.01362 1.03604 1.25896 1.01938 0.96850 1.10352 1.84055 1.03344 1.05392 1.72068 0.93821 0.88568 0.94181 0.87279 0.93712 0.88649 0.94146 0.92245 0.85724 0.86034 0.84534 0.82056 0.79188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 9.15 71.98 0.66 -3.97 16 2 C 0.11 3.67 3.15 44.99 0.14 3.81 16 3 C -0.15 -4.38 8.95 71.98 0.64 -3.73 16 4 N -0.47 -21.63 2.12 -613.12 -1.30 -22.93 16 5 C -0.33 -18.58 8.63 84.04 0.73 -17.86 16 6 H 0.07 4.22 7.07 -2.91 -0.02 4.20 16 7 C 0.04 2.60 4.80 84.93 0.41 3.01 16 8 N -0.91 -58.83 13.96 21.66 0.30 -58.52 16 9 Si 0.96 51.82 24.82 68.60 1.70 53.52 16 10 H -0.28 -16.39 6.29 99.48 0.63 -15.76 16 11 H -0.31 -16.79 7.11 99.48 0.71 -16.08 16 12 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.44 20.24 5.91 87.66 0.52 20.75 16 14 O -0.58 -32.76 11.41 -3.06 -0.03 -32.80 16 15 C -0.06 -2.03 4.51 29.10 0.13 -1.90 16 16 C -0.16 -5.53 5.00 24.59 0.12 -5.41 16 17 C -0.15 -4.90 10.05 21.22 0.21 -4.69 16 18 C -0.14 -3.88 10.18 21.22 0.22 -3.67 16 19 C -0.22 -5.60 11.23 66.72 0.75 -4.85 16 20 S 0.09 2.68 23.33 -56.49 -1.32 1.36 16 21 H 0.04 1.55 7.90 -2.39 -0.02 1.53 16 22 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.11 2.74 5.78 -2.38 -0.01 2.72 16 25 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.04 1.41 7.21 -2.39 -0.02 1.39 16 28 H 0.27 16.49 8.31 -92.71 -0.77 15.72 16 29 H 0.12 3.37 7.86 -2.39 -0.02 3.35 16 30 H 0.12 3.24 7.71 -2.39 -0.02 3.22 16 31 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -76.53 286.28 4.89 -71.64 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.01 Total: 6.23 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 4.53 Total: -18.50 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.00 Total: -81.46 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.03 Total: -32.80 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 1.70 Total: 53.52 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.32 Total: 1.36 kcal Total: -76.53 4.89 -71.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057515155.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.979 kcal (2) G-P(sol) polarization free energy of solvation -76.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds