Wall clock time and date at job start Mon Mar 30 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50690 * 119.99868 * 2 1 4 4 N 1.46501 * 109.46947 * 124.99966 * 3 2 1 5 5 C 1.36760 * 127.14590 * 270.02079 * 4 3 2 6 6 C 1.50699 * 126.33793 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.47025 * 269.97073 * 6 5 4 8 8 N 1.30290 * 107.32121 * 179.97438 * 5 4 3 9 9 N 1.28524 * 110.08135 * 0.02562 * 8 5 4 10 10 C 1.31284 * 109.85398 * 359.97438 * 9 8 5 11 11 S 1.76209 * 126.48497 * 179.74060 * 10 9 8 12 12 C 1.80998 * 99.99789 * 0.02562 * 11 10 9 13 13 C 1.50704 * 109.47289 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99695 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00075 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00377 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99944 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46888 * 90.00542 * 17 15 13 19 19 H 1.48494 * 109.47330 * 210.00544 * 17 15 13 20 20 H 1.48493 * 109.47295 * 330.00755 * 17 15 13 21 21 H 1.08005 * 119.99922 * 179.97438 * 1 2 3 22 22 H 1.08000 * 119.99783 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.99783 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47511 * 5.00379 * 3 2 1 25 25 H 1.09000 * 109.47718 * 244.99673 * 3 2 1 26 26 H 1.09000 * 109.47602 * 29.96895 * 6 5 4 27 27 H 1.09000 * 109.47525 * 149.97460 * 6 5 4 28 28 H 1.09005 * 109.47094 * 59.99695 * 7 6 5 29 29 H 1.08997 * 109.47382 * 179.97438 * 7 6 5 30 30 H 1.09005 * 109.47225 * 300.00478 * 7 6 5 31 31 H 1.08998 * 109.47424 * 300.00146 * 12 11 10 32 32 H 1.09005 * 109.47255 * 59.99890 * 12 11 10 33 33 H 0.97001 * 120.00022 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.7446 1.7930 2.3946 6 6 1.4473 2.3759 2.8927 7 6 1.4488 3.8894 2.6683 8 7 3.8363 1.6341 3.0879 9 7 4.7519 1.1084 2.3550 10 6 4.2894 0.9013 1.1439 11 16 5.1756 0.2065 -0.2114 12 6 6.7773 -0.0882 0.5783 13 6 7.7256 -0.6987 -0.4213 14 1 7.3956 -0.8895 -1.4318 15 6 9.0145 -1.0126 -0.0461 16 7 9.4165 -0.7798 1.1843 17 14 10.1902 -1.7687 -1.2854 18 1 10.9240 -0.6894 -1.9937 19 1 11.1589 -2.6444 -0.5784 20 1 9.4222 -2.5732 -2.2692 21 1 -0.5400 -0.9354 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6214 1.4026 -0.9313 26 1 0.6153 1.9288 2.3487 27 1 1.3398 2.1667 3.9570 28 1 1.5563 4.0987 1.6039 29 1 0.5103 4.3110 3.0281 30 1 2.2807 4.3366 3.2123 31 1 7.1852 0.8570 0.9364 32 1 6.6479 -0.7698 1.4191 33 1 10.3233 -1.0010 1.4483 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075321835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:59 Heat of formation + Delta-G solvation = 79.917428 kcal Electronic energy + Delta-G solvation = -15998.323224 eV Core-core repulsion = 13379.835170 eV Total energy + Delta-G solvation = -2618.488053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.46948 -36.23920 -34.06105 -33.18920 -32.62320 -29.44396 -28.47651 -26.86751 -24.18543 -23.08687 -22.29844 -20.62602 -20.06996 -17.54951 -16.45804 -16.07172 -15.95655 -14.91003 -14.84361 -14.60422 -14.18822 -13.76619 -13.09170 -12.83145 -12.55509 -12.40940 -12.25281 -11.83894 -11.68327 -11.38230 -11.24763 -10.91842 -10.81511 -10.49292 -10.06609 -9.94055 -9.79144 -9.65532 -9.33961 -9.21067 -8.59802 -6.85579 -6.18906 -4.27513 1.67942 1.96386 2.06999 3.03067 3.25626 3.26257 3.31349 3.33472 3.49398 4.33358 4.40320 4.49379 4.56126 4.78615 5.01204 5.09603 5.17238 5.23481 5.32995 5.49051 5.57973 5.64366 5.86430 6.00349 6.10534 6.27404 6.34374 6.39885 7.05619 7.13447 7.24555 7.68389 7.93810 8.73231 9.12429 9.36006 10.91431 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.032543 B = 0.005179 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.205166 B = 5404.774169 C = 6036.551532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.171 4.171 3 C 0.137 3.863 4 N -0.468 5.468 5 C 0.164 3.836 6 C -0.030 4.030 7 C -0.147 4.147 8 N -0.288 5.288 9 N -0.291 5.291 10 C 0.179 3.821 11 S -0.060 6.060 12 C 0.080 3.920 13 C -0.527 4.527 14 H 0.067 0.933 15 C 0.071 3.929 16 N -0.881 5.881 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.121 0.879 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.815 5.173 -2.270 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C 0.014 3.986 4 N -0.163 5.163 5 C -0.106 4.106 6 C -0.070 4.070 7 C -0.205 4.205 8 N -0.127 5.127 9 N -0.134 5.134 10 C -0.195 4.195 11 S 0.169 5.831 12 C -0.067 4.067 13 C -0.567 4.567 14 H 0.085 0.915 15 C -0.134 4.134 16 N -0.517 5.517 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.195 1.195 21 H 0.124 0.876 22 H 0.118 0.882 23 H 0.139 0.861 24 H 0.115 0.885 25 H 0.125 0.875 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.021 4.980 -2.068 18.811 hybrid contribution 0.204 -0.238 -0.414 0.519 sum -17.818 4.742 -2.482 18.604 Atomic orbital electron populations 1.23901 0.95354 1.02386 0.99124 1.23196 0.96290 0.98558 1.00944 1.20931 0.91878 0.97083 0.88722 1.46444 1.10463 1.48338 1.11045 1.24877 0.99431 1.03980 0.82303 1.19892 0.89057 0.95557 1.02457 1.21758 1.02636 0.94171 1.01983 1.73922 0.97360 1.15588 1.25868 1.74835 1.22169 1.17291 0.99123 1.27406 0.85954 1.04260 1.01855 1.85378 1.14427 1.73957 1.09341 1.21320 0.85323 1.01728 0.98348 1.20585 0.95808 1.43402 0.96905 0.91498 1.24938 0.97633 0.95213 0.95654 1.69987 1.18482 1.46211 1.17069 0.86346 0.80345 0.79159 0.80747 1.20270 1.20858 1.19544 0.87640 0.88248 0.86104 0.88484 0.87468 0.90406 0.88556 0.92889 0.91544 0.91662 0.92944 0.92917 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 14.32 29.01 0.42 -0.93 16 2 C -0.17 -1.82 9.85 -36.03 -0.35 -2.17 16 3 C 0.14 1.58 6.19 -5.20 -0.03 1.55 16 4 N -0.47 -7.66 2.79 -114.82 -0.32 -7.98 16 5 C 0.16 2.68 7.32 -154.00 -1.13 1.56 16 6 C -0.03 -0.32 6.15 -27.88 -0.17 -0.49 16 7 C -0.15 -1.35 9.89 37.16 0.37 -0.98 16 8 N -0.29 -6.05 12.17 32.99 0.40 -5.65 16 9 N -0.29 -6.89 11.60 30.68 0.36 -6.54 16 10 C 0.18 3.74 8.07 -88.34 -0.71 3.03 16 11 S -0.06 -1.28 21.72 -107.50 -2.34 -3.62 16 12 C 0.08 2.14 4.99 36.01 0.18 2.32 16 13 C -0.53 -14.63 9.13 -34.44 -0.31 -14.95 16 14 H 0.07 1.79 7.71 -52.48 -0.40 1.39 16 15 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 16 N -0.88 -26.03 13.29 55.43 0.74 -25.29 16 17 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H 0.11 0.74 8.06 -52.48 -0.42 0.31 16 22 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 23 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 24 H 0.10 0.83 7.53 -51.93 -0.39 0.44 16 25 H 0.11 1.24 7.85 -51.93 -0.41 0.83 16 26 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 1.51 8.14 -51.92 -0.42 1.09 16 32 H 0.05 1.52 8.14 -51.91 -0.42 1.10 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -32.74 305.95 -7.96 -40.71 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.54 Total: -3.11 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.85 Total: -9.18 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 1.17 Total: -45.46 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.34 Total: -3.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.74 -7.96 -40.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.624 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds