Wall clock time and date at job start Mon Mar 30 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50690 * 119.99868 * 2 1 4 4 N 1.46501 * 109.46947 * 124.99966 * 3 2 1 5 5 C 1.36760 * 127.14590 * 270.02079 * 4 3 2 6 6 C 1.50699 * 126.33793 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.47025 * 269.97073 * 6 5 4 8 8 N 1.30290 * 107.32121 * 179.97438 * 5 4 3 9 9 N 1.28524 * 110.08135 * 0.02562 * 8 5 4 10 10 C 1.31284 * 109.85398 * 359.97438 * 9 8 5 11 11 S 1.76209 * 126.48497 * 179.74060 * 10 9 8 12 12 C 1.80998 * 99.99789 * 0.02562 * 11 10 9 13 13 C 1.50704 * 109.47289 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99695 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00075 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00377 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99944 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46888 * 90.00542 * 17 15 13 19 19 H 1.48494 * 109.47330 * 210.00544 * 17 15 13 20 20 H 1.48493 * 109.47295 * 330.00755 * 17 15 13 21 21 H 1.08005 * 119.99922 * 179.97438 * 1 2 3 22 22 H 1.08000 * 119.99783 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.99783 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47511 * 5.00379 * 3 2 1 25 25 H 1.09000 * 109.47718 * 244.99673 * 3 2 1 26 26 H 1.09000 * 109.47602 * 29.96895 * 6 5 4 27 27 H 1.09000 * 109.47525 * 149.97460 * 6 5 4 28 28 H 1.09005 * 109.47094 * 59.99695 * 7 6 5 29 29 H 1.08997 * 109.47382 * 179.97438 * 7 6 5 30 30 H 1.09005 * 109.47225 * 300.00478 * 7 6 5 31 31 H 1.08998 * 109.47424 * 300.00146 * 12 11 10 32 32 H 1.09005 * 109.47255 * 59.99890 * 12 11 10 33 33 H 0.97001 * 120.00022 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.7446 1.7930 2.3946 6 6 1.4473 2.3759 2.8927 7 6 1.4488 3.8894 2.6683 8 7 3.8363 1.6341 3.0879 9 7 4.7519 1.1084 2.3550 10 6 4.2894 0.9013 1.1439 11 16 5.1756 0.2065 -0.2114 12 6 6.7773 -0.0882 0.5783 13 6 7.7256 -0.6987 -0.4213 14 1 7.3956 -0.8895 -1.4318 15 6 9.0145 -1.0126 -0.0461 16 7 9.4165 -0.7798 1.1843 17 14 10.1902 -1.7687 -1.2854 18 1 10.9240 -0.6894 -1.9937 19 1 11.1589 -2.6444 -0.5784 20 1 9.4222 -2.5732 -2.2692 21 1 -0.5400 -0.9354 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0896 25 1 2.6214 1.4026 -0.9313 26 1 0.6153 1.9288 2.3487 27 1 1.3398 2.1667 3.9570 28 1 1.5563 4.0987 1.6039 29 1 0.5103 4.3110 3.0281 30 1 2.2807 4.3366 3.2123 31 1 7.1852 0.8570 0.9364 32 1 6.6479 -0.7698 1.4191 33 1 10.3233 -1.0010 1.4483 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075321835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:59 Heat of formation + Delta-G solvation = 60.363288 kcal Electronic energy + Delta-G solvation = -15999.171155 eV Core-core repulsion = 13379.835170 eV Total energy + Delta-G solvation = -2619.335985 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.92190 -37.30809 -35.34027 -35.02610 -33.69781 -31.05608 -30.40018 -27.87020 -25.54590 -24.80546 -23.82864 -21.73589 -20.99587 -19.10108 -18.27892 -17.50427 -17.34571 -16.65194 -15.88633 -15.75873 -15.24915 -14.81821 -14.66396 -14.50264 -14.37984 -13.64918 -13.39224 -12.97246 -12.74988 -12.63618 -12.60292 -12.46448 -12.34616 -12.12774 -11.68079 -11.60805 -11.28495 -11.10138 -10.90503 -10.66976 -10.55099 -8.58727 -8.33368 -6.52121 0.21430 0.60800 1.04844 1.40899 1.44256 1.45613 1.57568 1.73752 1.90832 2.36469 3.00975 3.34139 3.57946 3.76739 3.89724 4.14623 4.28753 4.35455 4.47369 4.53266 4.69818 4.86840 4.94628 4.96004 4.97524 5.00334 5.11564 5.30456 5.51366 5.55025 5.61702 5.77447 5.86852 6.57065 7.17824 7.61503 8.79013 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.032543 B = 0.005179 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.205166 B = 5404.774169 C = 6036.551532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.208 4.208 3 C 0.129 3.871 4 N -0.457 5.457 5 C 0.191 3.809 6 C -0.030 4.030 7 C -0.142 4.142 8 N -0.339 5.339 9 N -0.344 5.344 10 C 0.153 3.847 11 S -0.009 6.009 12 C 0.080 3.920 13 C -0.545 4.545 14 H 0.077 0.923 15 C 0.015 3.985 16 N -0.924 5.924 17 Si 0.985 3.015 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.257 1.257 21 H 0.117 0.883 22 H 0.131 0.869 23 H 0.093 0.907 24 H 0.139 0.861 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.041 0.959 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.923 5.659 -3.994 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.227 4.227 3 C 0.009 3.991 4 N -0.151 5.151 5 C -0.080 4.080 6 C -0.069 4.069 7 C -0.201 4.201 8 N -0.178 5.178 9 N -0.187 5.187 10 C -0.223 4.223 11 S 0.219 5.781 12 C -0.068 4.068 13 C -0.585 4.585 14 H 0.095 0.905 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.807 3.193 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.181 1.181 21 H 0.135 0.865 22 H 0.149 0.851 23 H 0.111 0.889 24 H 0.157 0.843 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.174 5.474 -3.809 22.200 hybrid contribution 0.899 -0.317 0.186 0.972 sum -20.275 5.157 -3.623 21.232 Atomic orbital electron populations 1.24227 0.94086 1.04423 0.94005 1.22945 0.97261 0.96919 1.05623 1.21389 0.91692 0.99309 0.86758 1.46762 1.09297 1.46652 1.12377 1.26012 0.99937 1.00492 0.81576 1.20293 0.86754 0.96597 1.03283 1.21750 1.03607 0.92550 1.02162 1.73811 0.98824 1.18060 1.27132 1.74709 1.24508 1.18789 1.00691 1.27208 0.88161 1.05747 1.01143 1.84729 1.10451 1.74582 1.08297 1.20870 0.89215 0.98882 0.97829 1.20970 0.96586 1.43576 0.97330 0.90510 1.26046 0.99627 0.95308 0.97706 1.70141 1.19175 1.47344 1.19515 0.85156 0.77662 0.78442 0.78037 1.19190 1.20347 1.18063 0.86524 0.85113 0.88891 0.84321 0.87885 0.86730 0.87786 0.92408 0.87964 0.94022 0.96613 0.96650 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 14.32 67.77 0.97 -0.48 16 2 C -0.21 -3.93 9.85 25.64 0.25 -3.68 16 3 C 0.13 2.65 6.19 85.63 0.53 3.18 16 4 N -0.46 -14.64 2.79 -517.19 -1.45 -16.08 16 5 C 0.19 6.07 7.32 137.63 1.01 7.08 16 6 C -0.03 -0.54 6.15 29.85 0.18 -0.35 16 7 C -0.14 -2.10 9.89 71.98 0.71 -1.39 16 8 N -0.34 -14.75 12.17 -49.53 -0.60 -15.35 16 9 N -0.34 -17.25 11.60 -56.85 -0.66 -17.91 16 10 C 0.15 6.65 8.07 179.55 1.45 8.10 16 11 S -0.01 -0.41 21.72 -56.49 -1.23 -1.64 16 12 C 0.08 4.59 4.99 71.24 0.36 4.94 16 13 C -0.55 -31.32 9.13 25.60 0.23 -31.08 16 14 H 0.08 4.15 7.71 -2.91 -0.02 4.13 16 15 C 0.01 0.85 5.46 84.65 0.46 1.31 16 16 N -0.92 -56.93 13.29 21.44 0.28 -56.65 16 17 Si 0.98 43.58 29.54 68.60 2.03 45.60 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H 0.12 1.10 8.06 -2.91 -0.02 1.08 16 22 H 0.13 0.69 7.84 -2.91 -0.02 0.67 16 23 H 0.09 2.27 8.06 -2.91 -0.02 2.25 16 24 H 0.14 1.68 7.53 -2.39 -0.02 1.66 16 25 H 0.10 2.20 7.85 -2.39 -0.02 2.18 16 26 H 0.11 1.29 7.92 -2.39 -0.02 1.27 16 27 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.02 0.98 8.14 -2.40 -0.02 0.96 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.88 305.95 5.62 -72.26 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 1.09 Total: 2.15 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 6.16 Total: -12.38 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -2.42 Total: -106.00 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.23 Total: -1.64 kcal Total: -77.88 5.62 -72.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.621 kcal (2) G-P(sol) polarization free energy of solvation -77.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds