Wall clock time and date at job start Mon Mar 30 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47260 * 2 1 4 4 N 1.30675 * 123.22725 * 90.02810 * 3 2 1 5 5 C 1.29524 * 117.63289 * 179.97438 * 4 3 2 6 6 C 1.50701 * 124.55899 * 179.97438 * 5 4 3 7 7 H 1.09001 * 110.27726 * 345.63624 * 6 5 4 8 8 C 1.54943 * 110.31014 * 107.83385 * 6 5 4 9 9 C 1.55299 * 100.94342 * 155.36051 * 8 6 5 10 10 C 1.54385 * 102.25112 * 325.86645 * 9 8 6 11 11 O 1.43232 * 107.59147 * 21.35418 * 10 9 8 12 12 S 1.70883 * 110.87631 * 359.97438 * 5 4 3 13 13 C 1.38597 * 123.22515 * 270.00397 * 3 2 1 14 14 C 1.40036 * 126.25066 * 0.02562 * 13 3 2 15 15 H 1.08005 * 120.00543 * 359.96952 * 14 13 3 16 16 C 1.40075 * 119.99959 * 179.97438 * 14 13 3 17 17 N 1.30872 * 119.99799 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00302 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47209 * 60.00076 * 18 16 14 20 20 H 1.48497 * 109.47362 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47350 * 300.00160 * 18 16 14 22 22 H 1.08997 * 109.47389 * 59.99867 * 1 2 3 23 23 H 1.08996 * 109.47107 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46697 * 299.99844 * 1 2 3 25 25 H 1.09002 * 109.46697 * 240.00156 * 2 1 3 26 26 H 1.09001 * 109.47131 * 120.00564 * 2 1 3 27 27 H 1.09005 * 111.12310 * 273.27560 * 8 6 5 28 28 H 1.08998 * 111.12597 * 37.43539 * 8 6 5 29 29 H 1.09004 * 110.84747 * 207.67836 * 9 8 6 30 30 H 1.08995 * 111.02712 * 84.13488 * 9 8 6 31 31 H 1.09001 * 109.82771 * 261.84409 * 10 9 8 32 32 H 1.08995 * 109.83100 * 140.87638 * 10 9 8 33 33 H 0.96992 * 120.00069 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2716 2.0956 1.0931 5 6 2.7017 3.3108 0.9668 6 6 3.0258 4.2270 2.1187 7 1 2.6152 3.8277 3.0461 8 6 4.5590 4.4130 2.2430 9 6 4.6317 5.7862 2.9648 10 6 3.4129 6.5299 2.3776 11 8 2.5072 5.5433 1.8698 12 16 2.8523 3.7353 -0.6816 13 6 2.2855 2.1367 -1.1594 14 6 2.1212 1.6741 -2.4709 15 1 1.7662 0.6697 -2.6488 16 6 2.4176 2.5138 -3.5521 17 7 2.8484 3.7307 -3.3366 18 14 2.1992 1.8965 -5.3015 19 1 0.7798 1.5185 -5.5195 20 1 2.5785 2.9691 -6.2559 21 1 3.0663 0.7110 -5.5199 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 5.0021 3.6251 2.8522 28 1 5.0299 4.4598 1.2612 29 1 5.5582 6.3051 2.7188 30 1 4.5306 5.6669 4.0435 31 1 3.7348 7.1870 1.5697 32 1 2.9246 7.1134 3.1581 33 1 3.0533 4.3123 -4.0852 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082423957.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:10 Heat of formation + Delta-G solvation = -43.348321 kcal Electronic energy + Delta-G solvation = -16534.709183 eV Core-core repulsion = 13878.583175 eV Total energy + Delta-G solvation = -2656.126008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.85361 -37.57988 -34.24575 -32.32854 -31.60082 -29.68932 -28.62209 -25.16291 -23.06966 -22.56407 -21.22357 -20.14871 -18.69941 -17.19317 -16.22096 -15.74066 -15.28562 -14.83325 -14.21799 -13.59833 -13.38518 -12.91857 -12.78948 -12.44433 -12.27922 -11.88153 -11.52526 -11.50821 -11.26288 -11.04616 -10.99624 -10.72113 -10.63226 -10.48839 -10.37859 -10.02107 -9.75864 -9.12295 -9.01724 -7.82197 -7.72440 -7.01993 -6.99491 -4.56575 2.48733 2.88954 2.92646 3.03710 3.48833 3.64300 4.06662 4.08540 4.56975 4.92010 5.01292 5.16190 5.28645 5.62235 5.74565 5.96445 5.99603 6.03883 6.11541 6.23115 6.26269 6.40255 6.44845 6.66516 6.69519 6.73963 6.84951 6.93225 7.14755 7.36973 7.60304 7.73582 7.95733 8.36195 8.36668 9.75891 9.80404 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.007757 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.700967 B = 3608.683111 C = 4535.295630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.139 4.139 4 N -0.422 5.422 5 C -0.192 4.192 6 C 0.193 3.807 7 H 0.068 0.932 8 C -0.144 4.144 9 C -0.157 4.157 10 C 0.051 3.949 11 O -0.375 6.375 12 S 0.152 5.848 13 C -0.003 4.003 14 C -0.365 4.365 15 H 0.098 0.902 16 C 0.048 3.952 17 N -0.772 5.772 18 Si 0.935 3.065 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.260 1.260 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 1.994 2.493 4.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 C -0.276 4.276 4 N -0.135 5.135 5 C -0.459 4.459 6 C 0.133 3.867 7 H 0.086 0.914 8 C -0.182 4.182 9 C -0.194 4.194 10 C -0.026 4.026 11 O -0.294 6.294 12 S 0.405 5.595 13 C -0.127 4.127 14 C -0.402 4.402 15 H 0.116 0.884 16 C -0.174 4.174 17 N -0.399 5.399 18 Si 0.758 3.242 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.185 1.185 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.662 3.065 2.470 4.752 hybrid contribution -0.202 -1.009 -0.609 1.196 sum 2.460 2.056 1.861 3.707 Atomic orbital electron populations 1.21718 0.97208 0.99210 1.01547 1.19377 0.93876 0.91539 0.99871 1.19790 1.22767 0.98818 0.86179 1.64889 1.09067 1.05794 1.33794 1.25411 1.23972 0.96794 0.99724 1.20538 0.90940 0.81238 0.93976 0.91380 1.23297 0.97406 0.96087 1.01430 1.23110 0.98924 0.97005 1.00395 1.23015 0.89986 0.91949 0.97633 1.88497 1.44765 1.14829 1.81344 1.84033 1.65463 1.14201 0.95835 1.23184 0.97561 0.94796 0.97143 1.19154 1.32568 1.00043 0.88467 0.88381 1.26243 0.93413 0.94377 1.03379 1.69008 1.29102 1.06235 1.35522 0.85860 0.80261 0.79471 0.78571 1.18442 1.19824 1.18464 0.92961 0.94382 0.93568 0.92529 0.93385 0.90384 0.90150 0.90560 0.91022 0.91817 0.92189 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.90 37.16 0.37 -2.37 16 2 C -0.01 -0.15 6.11 -27.88 -0.17 -0.32 16 3 C -0.14 -3.61 6.15 -82.96 -0.51 -4.12 16 4 N -0.42 -11.16 10.48 -7.08 -0.07 -11.24 16 5 C -0.19 -4.82 6.37 -13.25 -0.08 -4.91 16 6 C 0.19 4.09 3.96 -26.86 -0.11 3.98 16 7 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 8 C -0.14 -2.50 6.56 -24.49 -0.16 -2.66 16 9 C -0.16 -2.15 7.02 -24.79 -0.17 -2.33 16 10 C 0.05 0.80 7.79 37.88 0.30 1.10 16 11 O -0.38 -7.86 10.86 -35.23 -0.38 -8.24 16 12 S 0.15 3.91 20.05 -107.50 -2.16 1.76 16 13 C 0.00 -0.08 6.25 -38.78 -0.24 -0.32 16 14 C -0.36 -9.11 8.93 -38.22 -0.34 -9.45 16 15 H 0.10 2.29 6.94 -52.48 -0.36 1.92 16 16 C 0.05 1.11 5.50 -17.27 -0.09 1.02 16 17 N -0.77 -18.57 10.76 55.56 0.60 -17.97 16 18 Si 0.94 17.28 29.56 -169.99 -5.03 12.25 16 19 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 20 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 22 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.18 7.15 -51.93 -0.37 0.81 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 1.49 8.05 -51.93 -0.42 1.08 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.30 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -28.73 289.42 -8.42 -37.14 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.52 Total: 2.31 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -1.22 Total: -20.38 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 0.52 Total: -29.21 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.38 Total: -8.24 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -2.16 Total: 1.76 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.73 -8.42 -37.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082423957.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.207 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds