Wall clock time and date at job start Mon Mar 30 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47260 * 2 1 4 4 N 1.30675 * 123.22725 * 90.02810 * 3 2 1 5 5 C 1.29524 * 117.63289 * 179.97438 * 4 3 2 6 6 C 1.50701 * 124.55899 * 179.97438 * 5 4 3 7 7 H 1.09001 * 110.27726 * 345.63624 * 6 5 4 8 8 C 1.54943 * 110.31014 * 107.83385 * 6 5 4 9 9 C 1.55299 * 100.94342 * 155.36051 * 8 6 5 10 10 C 1.54385 * 102.25112 * 325.86645 * 9 8 6 11 11 O 1.43232 * 107.59147 * 21.35418 * 10 9 8 12 12 S 1.70883 * 110.87631 * 359.97438 * 5 4 3 13 13 C 1.38597 * 123.22515 * 270.00397 * 3 2 1 14 14 C 1.40036 * 126.25066 * 0.02562 * 13 3 2 15 15 H 1.08005 * 120.00543 * 359.96952 * 14 13 3 16 16 C 1.40075 * 119.99959 * 179.97438 * 14 13 3 17 17 N 1.30872 * 119.99799 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00302 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47209 * 60.00076 * 18 16 14 20 20 H 1.48497 * 109.47362 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47350 * 300.00160 * 18 16 14 22 22 H 1.08997 * 109.47389 * 59.99867 * 1 2 3 23 23 H 1.08996 * 109.47107 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46697 * 299.99844 * 1 2 3 25 25 H 1.09002 * 109.46697 * 240.00156 * 2 1 3 26 26 H 1.09001 * 109.47131 * 120.00564 * 2 1 3 27 27 H 1.09005 * 111.12310 * 273.27560 * 8 6 5 28 28 H 1.08998 * 111.12597 * 37.43539 * 8 6 5 29 29 H 1.09004 * 110.84747 * 207.67836 * 9 8 6 30 30 H 1.08995 * 111.02712 * 84.13488 * 9 8 6 31 31 H 1.09001 * 109.82771 * 261.84409 * 10 9 8 32 32 H 1.08995 * 109.83100 * 140.87638 * 10 9 8 33 33 H 0.96992 * 120.00069 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2716 2.0956 1.0931 5 6 2.7017 3.3108 0.9668 6 6 3.0258 4.2270 2.1187 7 1 2.6152 3.8277 3.0461 8 6 4.5590 4.4130 2.2430 9 6 4.6317 5.7862 2.9648 10 6 3.4129 6.5299 2.3776 11 8 2.5072 5.5433 1.8698 12 16 2.8523 3.7353 -0.6816 13 6 2.2855 2.1367 -1.1594 14 6 2.1212 1.6741 -2.4709 15 1 1.7662 0.6697 -2.6488 16 6 2.4176 2.5138 -3.5521 17 7 2.8484 3.7307 -3.3366 18 14 2.1992 1.8965 -5.3015 19 1 0.7798 1.5185 -5.5195 20 1 2.5785 2.9691 -6.2559 21 1 3.0663 0.7110 -5.5199 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 5.0021 3.6251 2.8522 28 1 5.0299 4.4598 1.2612 29 1 5.5582 6.3051 2.7188 30 1 4.5306 5.6669 4.0435 31 1 3.7348 7.1870 1.5697 32 1 2.9246 7.1134 3.1581 33 1 3.0533 4.3123 -4.0852 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082423957.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:09 Heat of formation + Delta-G solvation = -60.738006 kcal Electronic energy + Delta-G solvation = -16535.463257 eV Core-core repulsion = 13878.583175 eV Total energy + Delta-G solvation = -2656.880082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36843 -39.40995 -36.08249 -34.05546 -32.97971 -31.35239 -30.31993 -26.88185 -24.89725 -24.15752 -22.47317 -21.84702 -20.56775 -19.01994 -17.87513 -17.38789 -16.86373 -16.35830 -15.76461 -15.19946 -15.03587 -14.57703 -14.33599 -14.08062 -13.91886 -13.60982 -13.10044 -13.06788 -12.83084 -12.63647 -12.42483 -12.20765 -12.14200 -12.02329 -11.74067 -11.72141 -11.44025 -11.01861 -10.52741 -9.75777 -9.67055 -8.97146 -8.82487 -6.47177 0.64558 1.37164 1.52583 1.52947 1.55380 2.02271 2.20971 2.30330 2.97625 3.20025 3.63665 3.82680 4.02073 4.22870 4.35950 4.42860 4.48867 4.68717 4.76760 4.83573 4.87915 4.91626 4.94821 5.02393 5.03171 5.13890 5.21334 5.27775 5.48951 5.55965 5.82492 6.05978 6.19579 6.47532 6.49260 7.85485 8.00946 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.007757 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.700967 B = 3608.683111 C = 4535.295630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.006 4.006 3 C -0.168 4.168 4 N -0.444 5.444 5 C -0.200 4.200 6 C 0.188 3.812 7 H 0.065 0.935 8 C -0.140 4.140 9 C -0.139 4.139 10 C 0.039 3.961 11 O -0.407 6.407 12 S 0.123 5.877 13 C -0.033 4.033 14 C -0.384 4.384 15 H 0.109 0.891 16 C 0.009 3.991 17 N -0.796 5.796 18 Si 1.011 2.989 19 H -0.255 1.255 20 H -0.263 1.263 21 H -0.252 1.252 22 H 0.039 0.961 23 H 0.075 0.925 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 1.937 1.958 3.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.046 4.046 3 C -0.303 4.303 4 N -0.158 5.158 5 C -0.468 4.468 6 C 0.128 3.872 7 H 0.083 0.917 8 C -0.179 4.179 9 C -0.177 4.177 10 C -0.037 4.037 11 O -0.327 6.327 12 S 0.375 5.625 13 C -0.157 4.157 14 C -0.421 4.421 15 H 0.127 0.873 16 C -0.210 4.210 17 N -0.423 5.423 18 Si 0.829 3.171 19 H -0.178 1.178 20 H -0.187 1.187 21 H -0.176 1.176 22 H 0.058 0.942 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.035 3.018 1.963 4.709 hybrid contribution -0.309 -0.920 -0.439 1.065 sum 2.726 2.098 1.523 3.762 Atomic orbital electron populations 1.21611 0.95556 1.01222 1.00240 1.19453 0.95270 0.89517 1.00334 1.20411 1.23408 1.00476 0.85980 1.64980 1.10039 1.06509 1.34228 1.26113 1.23130 0.97082 1.00512 1.20625 0.93445 0.81045 0.92053 0.91723 1.23220 0.94355 0.98946 1.01347 1.23092 0.99219 0.94189 1.01179 1.23352 0.90436 0.91238 0.98680 1.88445 1.46709 1.15374 1.82128 1.83886 1.66465 1.15029 0.97083 1.23576 0.98638 0.95097 0.98344 1.19551 1.32912 1.00990 0.88617 0.87290 1.27287 0.92151 0.94117 1.07449 1.69058 1.28565 1.07299 1.37351 0.84764 0.80426 0.79233 0.72710 1.17845 1.18700 1.17611 0.94180 0.90623 0.94877 0.91837 0.92957 0.89280 0.91931 0.87851 0.88668 0.91309 0.89664 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.90 71.98 0.71 -4.27 16 2 C -0.01 -0.26 6.11 29.85 0.18 -0.07 16 3 C -0.17 -8.89 6.15 42.81 0.26 -8.63 16 4 N -0.44 -24.17 10.48 -176.30 -1.85 -26.02 16 5 C -0.20 -10.39 6.37 88.45 0.56 -9.83 16 6 C 0.19 8.08 3.96 30.51 0.12 8.20 16 7 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 8 C -0.14 -4.78 6.56 32.05 0.21 -4.57 16 9 C -0.14 -3.47 7.02 31.85 0.22 -3.24 16 10 C 0.04 1.15 7.79 72.45 0.56 1.72 16 11 O -0.41 -17.10 10.86 -148.98 -1.62 -18.72 16 12 S 0.12 6.54 20.05 -56.49 -1.13 5.41 16 13 C -0.03 -1.81 6.25 22.79 0.14 -1.66 16 14 C -0.38 -19.30 8.93 23.15 0.21 -19.09 16 15 H 0.11 5.06 6.94 -2.91 -0.02 5.04 16 16 C 0.01 0.43 5.50 85.28 0.47 0.90 16 17 N -0.80 -38.44 10.76 21.86 0.24 -38.20 16 18 Si 1.01 34.12 29.56 68.60 2.03 36.15 16 19 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 20 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 21 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 22 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 2.63 7.15 -2.39 -0.02 2.61 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 28 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 29 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.31 13.22 8.30 -92.71 -0.77 12.45 16 Total: -1.00 -63.85 289.42 2.42 -61.43 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 1.10 Total: 20.50 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 3.66 Total: -40.55 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -1.61 Total: -64.22 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.62 Total: -18.72 kcal Atomic # 14 Polarization: 34.12 SS G_CDS: 2.03 Total: 36.15 kcal Atomic # 16 Polarization: 6.54 SS G_CDS: -1.13 Total: 5.41 kcal Total: -63.85 2.42 -61.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082423957.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.690 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds