Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38282 * 119.93251 * 2 1 4 4 C 1.38089 * 120.09002 * 180.29449 * 3 2 1 5 5 C 1.50703 * 120.02680 * 179.72364 * 4 3 2 6 6 C 1.38943 * 119.94926 * 359.45895 * 4 3 2 7 7 N 1.39668 * 120.07081 * 180.26773 * 6 4 3 8 8 C 1.46895 * 111.00239 * 269.88672 * 7 6 4 9 9 C 1.50708 * 109.46909 * 185.24565 * 8 7 6 10 10 H 1.07998 * 120.00165 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99821 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99748 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00066 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47131 * 60.00029 * 13 11 9 15 15 H 1.48498 * 109.47201 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46852 * 300.00132 * 13 11 9 17 17 C 1.38867 * 119.86366 * 0.54150 * 6 4 3 18 18 C 1.50696 * 120.04423 * 179.70578 * 17 6 4 19 19 C 1.38244 * 119.91318 * 359.73341 * 17 6 4 20 20 Cl 1.73597 * 119.97821 * 180.02562 * 19 17 6 21 21 H 1.09007 * 109.47278 * 90.00002 * 1 2 3 22 22 H 1.09001 * 109.46943 * 209.99230 * 1 2 3 23 23 H 1.09001 * 109.47332 * 329.99607 * 1 2 3 24 24 H 1.08005 * 119.95658 * 0.02598 * 3 2 1 25 25 H 1.08997 * 109.46536 * 95.24348 * 5 4 3 26 26 H 1.08996 * 109.47187 * 215.24392 * 5 4 3 27 27 H 1.08997 * 109.47059 * 335.24963 * 5 4 3 28 28 H 1.00911 * 110.99730 * 33.84124 * 7 6 4 29 29 H 1.08999 * 109.47151 * 305.24584 * 8 7 6 30 30 H 1.09000 * 109.47117 * 65.24806 * 8 7 6 31 31 H 0.97000 * 119.99433 * 179.97438 * 12 11 9 32 32 H 1.09005 * 109.47184 * 270.02320 * 18 17 6 33 33 H 1.08998 * 109.47342 * 30.02459 * 18 17 6 34 34 H 1.09003 * 109.47354 * 150.02370 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5778 1.2022 -0.0061 5 6 4.3284 2.5090 -0.0124 6 6 4.2748 0.0002 -0.0010 7 7 5.6715 0.0011 -0.0015 8 6 6.1975 -0.0074 -1.3730 9 6 7.6986 -0.1361 -1.3346 10 1 8.2105 -0.2051 -0.3862 11 6 8.4182 -0.1669 -2.5103 12 7 7.7946 -0.0834 -3.6652 13 14 10.2787 -0.3271 -2.4627 14 1 10.6492 -1.5938 -1.7822 15 1 10.8104 -0.3356 -3.8492 16 1 10.8555 0.8216 -1.7189 17 6 3.5799 -1.2021 -0.0010 18 6 4.3318 -2.5081 -0.0021 19 6 2.1975 -1.1993 -0.0006 20 17 1.3271 -2.7013 0.0000 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3634 0.8899 0.5139 24 1 1.6551 2.1327 0.0004 25 1 4.5952 2.7795 1.0092 26 1 5.2344 2.4048 -0.6092 27 1 3.6981 3.2879 -0.4416 28 1 6.0328 0.7862 0.5195 29 1 5.7744 -0.8506 -1.9191 30 1 5.9252 0.9224 -1.8724 31 1 8.3009 -0.1047 -4.4923 32 1 4.5127 -2.8223 -1.0300 33 1 5.2845 -2.3793 0.5115 34 1 3.7419 -3.2674 0.5115 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084915112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = -1.608079 kcal Electronic energy + Delta-G solvation = -16446.531261 eV Core-core repulsion = 13790.171539 eV Total energy + Delta-G solvation = -2656.359722 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73762 -36.54736 -35.32877 -33.04992 -32.87726 -31.29157 -27.66745 -27.23813 -26.32258 -24.64837 -21.93473 -20.54587 -20.01819 -17.03058 -16.28320 -15.82795 -14.79138 -14.24630 -14.14405 -13.83178 -13.30807 -13.21228 -12.90096 -12.83826 -12.57148 -12.35689 -12.12910 -11.73248 -11.59007 -11.44703 -11.09950 -11.00491 -10.81055 -10.73923 -10.58644 -10.41158 -10.05726 -9.41094 -8.61431 -8.26216 -8.14613 -7.33081 -6.10001 -4.13451 1.47808 1.64318 2.42385 3.29823 3.34327 3.36949 3.85981 4.37749 4.91782 4.99259 5.13683 5.20708 5.26155 5.44896 5.57299 5.67945 5.76799 5.85309 5.89785 6.00910 6.04251 6.18125 6.27609 6.31730 6.61643 6.63615 6.78333 6.91777 7.00558 7.21980 7.31155 7.72523 8.04649 8.17382 8.50750 8.93850 9.51669 11.00492 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.005776 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.416359 B = 4846.897306 C = 5440.454772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.105 4.105 4 C -0.121 4.121 5 C -0.118 4.118 6 C 0.130 3.870 7 N -0.645 5.645 8 C 0.204 3.796 9 C -0.519 4.519 10 H 0.064 0.936 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.901 3.099 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.064 4.064 18 C -0.107 4.107 19 C -0.033 4.033 20 Cl -0.079 7.079 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.123 0.877 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.343 0.657 29 H 0.033 0.967 30 H -0.004 1.004 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 0.977 7.336 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.124 4.124 4 C -0.124 4.124 5 C -0.175 4.175 6 C 0.031 3.969 7 N -0.272 5.272 8 C 0.081 3.919 9 C -0.557 4.557 10 H 0.082 0.918 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.728 3.272 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.067 4.067 18 C -0.163 4.163 19 C -0.060 4.060 20 Cl -0.051 7.051 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.140 0.860 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.163 0.837 29 H 0.051 0.949 30 H 0.014 0.986 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.202 0.157 7.182 14.159 hybrid contribution 0.728 0.705 -0.416 1.095 sum -11.474 0.862 6.766 13.348 Atomic orbital electron populations 1.20755 0.90945 1.02686 1.02307 1.19511 0.96072 0.91340 1.03211 1.20600 0.93164 0.96586 1.02081 1.20583 0.94181 0.95767 1.01907 1.20795 1.00818 0.93626 1.02250 1.18611 0.90941 0.90582 0.96791 1.58014 1.01375 1.48612 1.19193 1.19626 0.94994 0.96445 0.80837 1.21106 0.91005 1.50752 0.92879 0.91781 1.24977 0.98935 0.95150 0.95291 1.69955 1.35925 1.50119 0.97407 0.86518 0.84907 0.78780 0.76954 1.20088 1.21311 1.20212 1.19540 0.90684 0.96224 1.00235 1.20694 1.00699 0.92174 1.02774 1.20459 0.91428 0.85950 1.08131 1.98302 1.76423 1.33307 1.97019 0.91319 0.91302 0.91728 0.85955 0.91346 0.90454 0.91651 0.83697 0.94935 0.98624 0.92708 0.91161 0.89518 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.61 36.00 0.35 -0.92 16 2 C -0.10 -1.49 5.89 -104.55 -0.62 -2.11 16 3 C -0.11 -1.57 9.32 -39.62 -0.37 -1.94 16 4 C -0.12 -2.04 5.90 -104.41 -0.62 -2.66 16 5 C -0.12 -1.75 9.10 36.01 0.33 -1.42 16 6 C 0.13 2.48 5.24 -83.79 -0.44 2.04 16 7 N -0.65 -13.51 5.09 -59.53 -0.30 -13.81 16 8 C 0.20 5.16 5.11 -4.97 -0.03 5.14 16 9 C -0.52 -14.14 9.36 -34.44 -0.32 -14.47 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 13 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 C -0.06 -1.18 5.90 -104.39 -0.62 -1.80 16 18 C -0.11 -1.90 9.37 36.00 0.34 -1.56 16 19 C -0.03 -0.54 6.31 -39.52 -0.25 -0.79 16 20 Cl -0.08 -1.14 25.62 -51.86 -1.33 -2.47 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.07 0.77 6.89 -51.93 -0.36 0.41 16 23 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 24 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.32 6.07 -51.93 -0.32 1.01 16 27 H 0.06 0.83 8.05 -51.93 -0.42 0.42 16 28 H 0.34 6.71 7.40 -39.29 -0.29 6.42 16 29 H 0.03 0.90 8.11 -51.93 -0.42 0.48 16 30 H 0.00 -0.11 7.06 -51.93 -0.37 -0.47 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.63 7.46 -51.93 -0.39 1.25 16 34 H 0.06 0.92 6.90 -51.93 -0.36 0.56 16 LS Contribution 296.06 15.07 4.46 4.46 Total: -1.00 -28.70 296.06 -8.36 -37.06 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.57 Total: 2.97 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.34 Total: -18.95 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.43 Total: -39.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.33 Total: -2.47 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.70 -8.36 -37.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084915112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.453 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds