Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38282 * 119.93251 * 2 1 4 4 C 1.38089 * 120.09002 * 180.29449 * 3 2 1 5 5 C 1.50703 * 120.02680 * 179.72364 * 4 3 2 6 6 C 1.38943 * 119.94926 * 359.45895 * 4 3 2 7 7 N 1.39668 * 120.07081 * 180.26773 * 6 4 3 8 8 C 1.46895 * 111.00239 * 269.88672 * 7 6 4 9 9 C 1.50708 * 109.46909 * 185.24565 * 8 7 6 10 10 H 1.07998 * 120.00165 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99821 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99748 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00066 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47131 * 60.00029 * 13 11 9 15 15 H 1.48498 * 109.47201 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46852 * 300.00132 * 13 11 9 17 17 C 1.38867 * 119.86366 * 0.54150 * 6 4 3 18 18 C 1.50696 * 120.04423 * 179.70578 * 17 6 4 19 19 C 1.38244 * 119.91318 * 359.73341 * 17 6 4 20 20 Cl 1.73597 * 119.97821 * 180.02562 * 19 17 6 21 21 H 1.09007 * 109.47278 * 90.00002 * 1 2 3 22 22 H 1.09001 * 109.46943 * 209.99230 * 1 2 3 23 23 H 1.09001 * 109.47332 * 329.99607 * 1 2 3 24 24 H 1.08005 * 119.95658 * 0.02598 * 3 2 1 25 25 H 1.08997 * 109.46536 * 95.24348 * 5 4 3 26 26 H 1.08996 * 109.47187 * 215.24392 * 5 4 3 27 27 H 1.08997 * 109.47059 * 335.24963 * 5 4 3 28 28 H 1.00911 * 110.99730 * 33.84124 * 7 6 4 29 29 H 1.08999 * 109.47151 * 305.24584 * 8 7 6 30 30 H 1.09000 * 109.47117 * 65.24806 * 8 7 6 31 31 H 0.97000 * 119.99433 * 179.97438 * 12 11 9 32 32 H 1.09005 * 109.47184 * 270.02320 * 18 17 6 33 33 H 1.08998 * 109.47342 * 30.02459 * 18 17 6 34 34 H 1.09003 * 109.47354 * 150.02370 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5778 1.2022 -0.0061 5 6 4.3284 2.5090 -0.0124 6 6 4.2748 0.0002 -0.0010 7 7 5.6715 0.0011 -0.0015 8 6 6.1975 -0.0074 -1.3730 9 6 7.6986 -0.1361 -1.3346 10 1 8.2105 -0.2051 -0.3862 11 6 8.4182 -0.1669 -2.5103 12 7 7.7946 -0.0834 -3.6652 13 14 10.2787 -0.3271 -2.4627 14 1 10.6492 -1.5938 -1.7822 15 1 10.8104 -0.3356 -3.8492 16 1 10.8555 0.8216 -1.7189 17 6 3.5799 -1.2021 -0.0010 18 6 4.3318 -2.5081 -0.0021 19 6 2.1975 -1.1993 -0.0006 20 17 1.3271 -2.7013 0.0000 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3634 0.8899 0.5139 24 1 1.6551 2.1327 0.0004 25 1 4.5952 2.7795 1.0092 26 1 5.2344 2.4048 -0.6092 27 1 3.6981 3.2879 -0.4416 28 1 6.0328 0.7862 0.5195 29 1 5.7744 -0.8506 -1.9191 30 1 5.9252 0.9224 -1.8724 31 1 8.3009 -0.1047 -4.4923 32 1 4.5127 -2.8223 -1.0300 33 1 5.2845 -2.3793 0.5115 34 1 3.7419 -3.2674 0.5115 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084915112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = -17.028978 kcal Electronic energy + Delta-G solvation = -16447.199962 eV Core-core repulsion = 13790.171539 eV Total energy + Delta-G solvation = -2657.028422 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06819 -37.85784 -36.77685 -34.81918 -34.33712 -32.79547 -29.14180 -28.81278 -27.58696 -26.18609 -23.85699 -21.84468 -21.32116 -18.84074 -17.89042 -17.27544 -16.70279 -15.70699 -15.38465 -15.23017 -14.87031 -14.59553 -14.17660 -14.16104 -13.99164 -13.62925 -13.58643 -13.36256 -12.90200 -12.84010 -12.69443 -12.67924 -12.29784 -12.15567 -12.14177 -11.79436 -11.60959 -11.40699 -10.68280 -9.85517 -9.43203 -8.86257 -8.23228 -6.34978 0.18254 0.33043 1.18083 1.41992 1.45018 1.53057 2.38926 2.56276 3.10399 3.49952 3.79252 3.88275 3.93479 4.33090 4.41608 4.56299 4.63754 4.70476 4.74004 4.76846 4.83887 4.84348 4.99505 5.07195 5.16304 5.25582 5.32527 5.38884 5.45773 5.56796 5.60290 5.84349 6.03043 6.36711 6.76584 6.84351 7.35643 8.87716 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.005776 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.416359 B = 4846.897306 C = 5440.454772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.092 4.092 3 C -0.103 4.103 4 C -0.126 4.126 5 C -0.114 4.114 6 C 0.090 3.910 7 N -0.641 5.641 8 C 0.227 3.773 9 C -0.535 4.535 10 H 0.067 0.933 11 C 0.005 3.995 12 N -0.933 5.933 13 Si 0.972 3.028 14 H -0.269 1.269 15 H -0.284 1.284 16 H -0.265 1.265 17 C -0.084 4.084 18 C -0.099 4.099 19 C -0.046 4.046 20 Cl -0.063 7.063 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.159 0.841 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.349 0.651 29 H -0.003 1.003 30 H -0.029 1.029 31 H 0.265 0.735 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 1.799 8.296 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.129 4.129 5 C -0.171 4.171 6 C -0.008 4.008 7 N -0.268 5.268 8 C 0.102 3.898 9 C -0.573 4.573 10 H 0.085 0.915 11 C -0.193 4.193 12 N -0.572 5.572 13 Si 0.796 3.204 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.189 1.189 17 C -0.087 4.087 18 C -0.155 4.155 19 C -0.073 4.073 20 Cl -0.034 7.034 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.176 0.824 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.169 0.831 29 H 0.016 0.984 30 H -0.011 1.011 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.373 0.979 8.171 15.702 hybrid contribution 0.922 0.444 -0.691 1.235 sum -12.450 1.424 7.480 14.594 Atomic orbital electron populations 1.20850 0.88112 1.04216 1.03381 1.20014 0.98100 0.90631 1.00600 1.21000 0.92342 0.98159 1.00671 1.20836 0.95397 0.95538 1.01096 1.20796 0.99737 0.93444 1.03101 1.18766 0.89981 0.92114 0.99958 1.57798 1.03185 1.49138 1.16685 1.19129 0.94229 0.93537 0.82870 1.21465 0.92147 1.50540 0.93154 0.91503 1.25908 1.04100 0.94540 0.94781 1.70091 1.37929 1.51103 0.98123 0.85397 0.78653 0.79183 0.77139 1.19448 1.20939 1.18925 1.19689 0.91910 0.95939 1.01126 1.20580 1.00333 0.93051 1.01579 1.20615 0.90935 0.87474 1.08258 1.98301 1.75760 1.32411 1.96946 0.90276 0.90932 0.89147 0.82366 0.89355 0.93515 0.89202 0.83093 0.98445 1.01137 0.92594 0.92985 0.91228 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.61 71.24 0.68 -1.42 16 2 C -0.09 -2.52 5.89 -19.82 -0.12 -2.63 16 3 C -0.10 -2.79 9.32 22.24 0.21 -2.58 16 4 C -0.13 -4.13 5.90 -19.73 -0.12 -4.24 16 5 C -0.11 -3.26 9.10 71.24 0.65 -2.61 16 6 C 0.09 3.50 5.24 38.21 0.20 3.70 16 7 N -0.64 -27.93 5.09 -342.26 -1.74 -29.68 16 8 C 0.23 12.08 5.11 85.56 0.44 12.52 16 9 C -0.53 -30.00 9.36 25.60 0.24 -29.76 16 10 H 0.07 3.63 7.81 -2.91 -0.02 3.60 16 11 C 0.01 0.30 5.46 84.66 0.46 0.76 16 12 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 13 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 17 C -0.08 -3.15 5.90 -19.71 -0.12 -3.26 16 18 C -0.10 -3.65 9.37 71.23 0.67 -2.98 16 19 C -0.05 -1.46 6.31 22.31 0.14 -1.32 16 20 Cl -0.06 -1.73 25.62 -2.72 -0.07 -1.80 16 21 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.07 1.37 6.89 -2.39 -0.02 1.36 16 23 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 24 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 1.63 6.07 -2.39 -0.01 1.61 16 27 H 0.09 2.08 8.05 -2.39 -0.02 2.06 16 28 H 0.35 14.11 7.40 -89.68 -0.66 13.44 16 29 H 0.00 -0.15 8.11 -2.39 -0.02 -0.17 16 30 H -0.03 -1.65 7.06 -2.39 -0.02 -1.67 16 31 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.07 2.76 7.46 -2.39 -0.02 2.74 16 34 H 0.08 2.48 6.90 -2.39 -0.02 2.46 16 Total: -1.00 -63.42 296.06 4.28 -59.14 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.44 Total: 16.07 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 3.34 Total: -33.84 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.46 Total: -85.39 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.07 Total: -1.80 kcal Total: -63.42 4.28 -59.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084915112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.111 kcal (2) G-P(sol) polarization free energy of solvation -63.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds