Wall clock time and date at job start Mon Mar 30 2020 06:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38460 * 120.04186 * 359.72219 * 3 2 1 5 5 C 1.38856 * 119.95213 * 179.79079 * 4 3 2 6 6 N 1.39990 * 119.97760 * 180.23380 * 5 4 3 7 7 C 1.38857 * 120.04191 * 0.46541 * 5 4 3 8 8 C 1.38190 * 120.08851 * 359.79259 * 7 5 4 9 9 C 1.38739 * 120.04470 * 359.97438 * 8 7 5 10 10 S 1.76200 * 120.01782 * 179.97438 * 9 8 7 11 11 C 1.81397 * 103.00082 * 0.02562 * 10 9 8 12 12 C 1.53005 * 109.46984 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46984 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00389 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99801 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00261 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 120.00096 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47199 * 89.99706 * 17 15 13 19 19 H 1.48493 * 109.46915 * 210.00262 * 17 15 13 20 20 H 1.48502 * 109.46605 * 330.00151 * 17 15 13 21 21 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 23 23 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 24 24 H 1.08005 * 120.02545 * 0.02562 * 4 3 2 25 25 H 0.97000 * 119.99191 * 180.22895 * 6 5 4 26 26 H 0.96995 * 120.00370 * 0.23294 * 6 5 4 27 27 H 1.08005 * 119.95344 * 179.76897 * 7 5 4 28 28 H 1.07999 * 119.97884 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47111 * 299.99729 * 11 10 9 30 30 H 1.09000 * 109.47405 * 60.00291 * 11 10 9 31 31 H 1.09003 * 109.47139 * 299.99483 * 12 11 10 32 32 H 1.08999 * 109.47293 * 59.99440 * 12 11 10 33 33 H 0.96997 * 120.00285 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3736 -0.0058 5 6 1.9257 3.6098 -0.0014 6 7 1.1647 4.7847 -0.0023 7 6 3.3124 3.6812 -0.0009 8 6 4.0659 2.5228 -0.0005 9 6 3.4378 1.2857 -0.0001 10 16 4.3992 -0.1910 -0.0002 11 6 6.1030 0.4314 -0.0003 12 6 7.0770 -0.7487 0.0002 13 6 8.4925 -0.2316 -0.0005 14 1 8.6789 0.8321 -0.0008 15 6 9.5497 -1.1167 0.0004 16 7 9.3228 -2.4121 0.0023 17 14 11.3044 -0.4759 0.0002 18 1 11.7691 -0.3051 1.4002 19 1 12.1853 -1.4455 -0.6990 20 1 11.3534 0.8323 -0.7007 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 0.2147 2.3183 -0.0099 25 1 1.6062 5.6484 -0.0026 26 1 0.1960 4.7352 -0.0026 27 1 3.8028 4.6435 -0.0013 28 1 5.1443 2.5804 -0.0006 29 1 6.2680 1.0387 -0.8902 30 1 6.2681 1.0386 0.8898 31 1 6.9119 -1.3556 0.8905 32 1 6.9120 -1.3563 -0.8895 33 1 10.0665 -3.0348 0.0025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086829530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:10 Heat of formation + Delta-G solvation = -45.253585 kcal Electronic energy + Delta-G solvation = -15626.793767 eV Core-core repulsion = 12970.585140 eV Total energy + Delta-G solvation = -2656.208627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.02249 -38.67924 -35.80650 -35.19759 -32.96120 -31.11002 -30.00640 -28.05328 -27.21956 -23.74056 -23.32000 -22.64953 -19.27453 -18.67118 -18.15206 -17.84043 -16.66338 -16.51667 -16.35117 -16.29455 -15.59945 -15.50635 -14.99929 -14.42608 -14.13768 -14.10268 -13.66050 -13.08521 -12.95957 -12.60043 -12.51843 -12.46788 -12.22534 -12.12310 -11.68798 -11.45270 -11.29332 -10.85633 -10.59173 -9.48583 -9.39506 -8.21431 -7.79511 -6.35036 0.39200 0.53193 0.79243 1.42586 1.44553 1.55791 1.79753 2.40231 2.42707 2.78640 2.98912 3.11898 3.86197 4.20814 4.22553 4.23406 4.35592 4.41683 4.41962 4.59395 4.69590 4.74858 4.87060 5.05040 5.24901 5.37166 5.38260 5.49060 5.67441 5.74547 6.12127 6.36291 6.58813 6.78534 7.03149 7.34249 8.90733 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.004486 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.186091 B = 6240.387488 C = 7062.824439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.176 3.824 4 C -0.271 4.271 5 C 0.249 3.751 6 N -0.859 5.859 7 C -0.217 4.217 8 C -0.060 4.060 9 C -0.191 4.191 10 S -0.168 6.168 11 C -0.066 4.066 12 C 0.044 3.956 13 C -0.541 4.541 14 H 0.068 0.932 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.973 3.027 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.260 1.260 21 H 0.113 0.887 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.157 0.843 25 H 0.410 0.590 26 H 0.409 0.591 27 H 0.147 0.853 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.078 0.922 31 H -0.002 1.002 32 H -0.002 1.002 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.580 14.658 -0.011 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.124 3.876 4 C -0.296 4.296 5 C 0.140 3.860 6 N -0.399 5.399 7 C -0.241 4.241 8 C -0.084 4.084 9 C -0.305 4.305 10 S 0.074 5.926 11 C -0.214 4.214 12 C 0.006 3.994 13 C -0.581 4.581 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.184 1.184 21 H 0.131 0.869 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.175 0.825 25 H 0.240 0.760 26 H 0.239 0.761 27 H 0.164 0.836 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.725 13.080 -0.014 23.668 hybrid contribution 1.006 1.341 0.013 1.677 sum -18.719 14.422 -0.001 23.630 Atomic orbital electron populations 1.23358 0.76304 1.05395 1.02469 1.86183 1.23623 1.26701 1.88061 1.18277 0.89663 0.85146 0.94500 1.20643 1.00588 0.89848 1.18512 1.17541 0.90593 0.87228 0.90624 1.42444 1.09001 1.04664 1.83803 1.20617 0.92171 0.98503 1.12849 1.20944 0.99974 0.90593 0.96870 1.20895 0.93977 0.96976 1.18695 1.85654 1.02163 1.11206 1.93574 1.23559 0.91638 1.02244 1.03987 1.18678 0.92838 0.92158 0.95738 1.21525 0.91186 0.93731 1.51617 0.91332 1.26033 1.04412 0.94917 0.94304 1.70118 1.33324 1.02776 1.50964 0.85325 0.77940 0.78447 0.78591 1.19618 1.20715 1.18385 0.86900 0.91267 0.91266 0.82533 0.75991 0.76108 0.83575 0.85546 0.90305 0.90297 0.98370 0.98363 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -10.09 9.86 -93.57 -0.92 -11.01 16 3 C 0.18 5.44 6.68 22.58 0.15 5.59 16 4 C -0.27 -6.19 8.88 22.47 0.20 -5.99 16 5 C 0.25 5.18 6.76 38.13 0.26 5.43 16 6 N -0.86 -9.94 9.10 -51.24 -0.47 -10.40 16 7 C -0.22 -5.25 9.89 22.41 0.22 -5.03 16 8 C -0.06 -1.87 9.35 22.38 0.21 -1.66 16 9 C -0.19 -6.86 6.11 22.65 0.14 -6.72 16 10 S -0.17 -7.24 21.40 -56.49 -1.21 -8.45 16 11 C -0.07 -3.00 4.27 71.98 0.31 -2.69 16 12 C 0.04 2.48 4.98 29.85 0.15 2.63 16 13 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 14 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 15 C 0.00 0.10 5.46 84.66 0.46 0.56 16 16 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 17 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 22 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 23 H 0.07 0.98 7.67 -2.38 -0.02 0.96 16 24 H 0.16 2.49 6.29 -2.91 -0.02 2.47 16 25 H 0.41 3.24 8.84 -92.71 -0.82 2.42 16 26 H 0.41 2.91 8.84 -92.71 -0.82 2.09 16 27 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 28 H 0.13 4.03 5.86 -2.91 -0.02 4.01 16 29 H 0.08 3.39 7.74 -2.39 -0.02 3.37 16 30 H 0.08 3.39 7.75 -2.39 -0.02 3.37 16 31 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -72.72 295.00 2.65 -70.07 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -0.50 Total: 8.42 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 3.44 Total: -37.47 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -0.18 Total: -67.98 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.92 Total: -11.01 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -7.24 SS G_CDS: -1.21 Total: -8.45 kcal Total: -72.72 2.65 -70.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086829530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.819 kcal (2) G-P(sol) polarization free energy of solvation -72.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds