Wall clock time and date at job start Mon Mar 30 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.77232 * 127.33698 * 2 1 4 4 C 1.72209 * 94.84398 * 179.97438 * 3 2 1 5 5 O 1.21831 * 127.05454 * 180.02562 * 4 3 2 6 6 N 1.34248 * 105.88577 * 359.97438 * 4 3 2 7 7 C 1.46498 * 121.37970 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.47162 * 92.71627 * 7 6 4 9 9 C 1.50694 * 115.54967 * 157.23383 * 8 7 6 10 10 H 1.07998 * 120.00212 * 146.89617 * 9 8 7 11 11 C 1.37872 * 120.00023 * 326.89736 * 9 8 7 12 12 N 1.31516 * 120.00213 * 341.03090 * 11 9 8 13 13 Si 1.86806 * 119.99986 * 161.03714 * 11 9 8 14 14 H 1.48495 * 109.47078 * 59.99774 * 13 11 9 15 15 H 1.48502 * 109.47112 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47163 * 299.99734 * 13 11 9 17 17 C 1.52997 * 117.49649 * 11.52719 * 8 7 6 18 18 C 1.52997 * 117.49529 * 302.90479 * 8 7 6 19 19 C 1.32557 * 127.34037 * 180.25497 * 2 1 3 20 20 C 1.50698 * 121.64815 * 359.97438 * 19 2 1 21 21 H 1.08995 * 109.47702 * 0.03080 * 1 2 3 22 22 H 1.09000 * 109.47030 * 120.03095 * 1 2 3 23 23 H 1.09002 * 109.47404 * 240.02905 * 1 2 3 24 24 H 1.09001 * 109.47222 * 332.72103 * 7 6 4 25 25 H 1.08998 * 109.47276 * 212.71830 * 7 6 4 26 26 H 0.96999 * 120.00204 * 185.07991 * 12 11 9 27 27 H 1.08998 * 117.50119 * 359.97438 * 17 8 7 28 28 H 1.09003 * 117.49999 * 145.02022 * 17 8 7 29 29 H 1.09001 * 117.49751 * 214.97536 * 18 8 7 30 30 H 1.08993 * 117.50474 * 0.02562 * 18 8 7 31 31 H 1.09004 * 109.46972 * 270.23635 * 20 19 2 32 32 H 1.09000 * 109.47449 * 30.23200 * 20 19 2 33 33 H 1.09004 * 109.47674 * 150.24109 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4091 0.0000 4 6 4.0344 0.4840 0.0008 5 8 5.1759 0.9098 0.0015 6 7 3.6507 -0.8024 0.0016 7 6 4.6312 -1.8909 0.0018 8 6 4.9223 -2.3149 1.4429 9 6 5.4611 -3.7118 1.6132 10 1 6.1620 -3.9274 2.4060 11 6 5.0592 -4.7148 0.7568 12 7 3.9603 -4.5735 0.0482 13 14 6.0756 -6.2747 0.6030 14 1 6.1581 -6.9441 1.9259 15 1 5.4336 -7.1894 -0.3749 16 1 7.4426 -5.9307 0.1361 17 6 4.0008 -1.7742 2.5380 18 6 5.4285 -1.2400 2.4069 19 6 2.3110 -1.0539 -0.0047 20 6 1.7707 -2.4606 -0.0104 21 1 -0.3634 1.0276 -0.0006 22 1 -0.3633 -0.5143 -0.8897 23 1 -0.3634 -0.5134 0.8902 24 1 5.5529 -1.5498 -0.4697 25 1 4.2319 -2.7398 -0.5531 26 1 3.6377 -5.3073 -0.4980 27 1 3.1875 -1.1162 2.2320 28 1 3.7839 -2.4291 3.3820 29 1 6.1509 -1.5434 3.1646 30 1 5.5538 -0.2308 2.0147 31 1 1.6368 -2.8026 1.0160 32 1 0.8114 -2.4794 -0.5275 33 1 2.4730 -3.1177 -0.5235 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:35 Heat of formation + Delta-G solvation = 21.300782 kcal Electronic energy + Delta-G solvation = -17412.706568 eV Core-core repulsion = 14759.383955 eV Total energy + Delta-G solvation = -2653.322613 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.53509 -37.10398 -36.21795 -32.70468 -32.40062 -29.07183 -28.05055 -25.91330 -24.13883 -22.65096 -21.20593 -19.60034 -18.68168 -17.61059 -16.80392 -15.92840 -15.54030 -14.90759 -14.40729 -13.65821 -13.48051 -13.34985 -13.04421 -12.70515 -12.51773 -12.12710 -12.01792 -11.74787 -11.14805 -11.04945 -10.93108 -10.85810 -10.46498 -10.37805 -10.17794 -9.78411 -9.55526 -9.23847 -8.91933 -8.69167 -8.13090 -7.26243 -6.33407 -4.30929 1.52564 1.91538 2.30934 2.86496 3.15603 3.22305 3.27431 3.56306 4.18497 4.72350 5.24300 5.39796 5.45488 5.63774 5.77578 5.97537 6.00702 6.09853 6.16668 6.26962 6.33971 6.41287 6.62007 6.69052 6.70966 6.81240 6.99045 7.08893 7.27376 7.32934 7.66643 7.76097 7.95747 8.23720 8.63155 9.26132 10.67359 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028847 B = 0.008245 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.390437 B = 3395.171406 C = 3888.297934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.249 4.249 3 S -0.054 6.054 4 C 0.484 3.516 5 O -0.485 6.485 6 N -0.513 5.513 7 C 0.111 3.889 8 C 0.041 3.959 9 C -0.481 4.481 10 H 0.066 0.934 11 C 0.071 3.929 12 N -0.883 5.883 13 Si 0.900 3.100 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.199 4.199 18 C -0.212 4.212 19 C 0.143 3.857 20 C -0.109 4.109 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.152 0.848 26 H 0.268 0.732 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 3.723 -1.997 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.368 4.368 3 S 0.188 5.812 4 C 0.166 3.834 5 O -0.367 6.367 6 N -0.230 5.230 7 C -0.012 4.012 8 C 0.040 3.960 9 C -0.518 4.518 10 H 0.085 0.915 11 C -0.131 4.131 12 N -0.521 5.521 13 Si 0.728 3.272 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.237 4.237 18 C -0.249 4.249 19 C 0.031 3.969 20 C -0.167 4.167 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.169 0.831 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.066 5.202 -2.193 9.044 hybrid contribution 0.841 -1.949 0.187 2.131 sum -6.225 3.253 -2.006 7.304 Atomic orbital electron populations 1.19900 0.86574 1.02035 1.02178 1.23198 0.99003 0.91368 1.23267 1.84587 1.00303 1.13706 1.82632 1.21396 0.93808 0.85326 0.82885 1.90884 1.19253 1.72046 1.54498 1.46247 1.06919 1.07947 1.61872 1.22245 0.90192 0.88407 1.00308 1.19244 0.97484 0.92719 0.86565 1.20515 1.25931 0.91074 1.14324 0.91539 1.24962 0.94433 0.98773 0.94896 1.69442 1.19689 1.32429 1.30544 0.86501 0.80786 0.81775 0.78170 1.20161 1.21017 1.19957 1.23005 0.91911 1.04122 1.04671 1.23019 0.97298 0.99012 1.05590 1.19553 0.82238 0.98476 0.96628 1.21070 1.01464 0.89489 1.04717 0.91765 0.91269 0.91224 0.91405 0.83082 0.92147 0.91794 0.90472 0.90592 0.90690 0.89805 0.91796 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 9.56 36.01 0.34 -0.22 16 2 C -0.25 -4.03 6.72 -36.22 -0.24 -4.27 16 3 S -0.05 -0.96 22.97 -107.50 -2.47 -3.43 16 4 C 0.48 10.36 7.41 53.82 0.40 10.76 16 5 O -0.49 -11.58 16.27 5.07 0.08 -11.50 16 6 N -0.51 -10.66 1.58 -117.28 -0.19 -10.84 16 7 C 0.11 2.53 5.14 -4.04 -0.02 2.51 16 8 C 0.04 0.98 2.37 -155.66 -0.37 0.62 16 9 C -0.48 -12.21 9.02 -34.44 -0.31 -12.52 16 10 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 11 C 0.07 1.71 5.11 -17.82 -0.09 1.62 16 12 N -0.88 -20.59 8.82 55.43 0.49 -20.10 16 13 Si 0.90 19.20 29.58 -169.99 -5.03 14.17 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 C -0.20 -4.53 9.39 -26.73 -0.25 -4.78 16 18 C -0.21 -4.93 9.67 -26.73 -0.26 -5.19 16 19 C 0.14 2.61 4.91 -82.51 -0.41 2.20 16 20 C -0.11 -1.86 9.39 36.00 0.34 -1.52 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.72 7.99 -51.93 -0.41 0.30 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 1.61 7.74 -51.93 -0.40 1.21 16 25 H 0.15 3.50 3.63 -51.93 -0.19 3.31 16 26 H 0.27 5.96 8.32 -40.82 -0.34 5.62 16 27 H 0.06 1.42 5.86 -51.93 -0.30 1.12 16 28 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 30 H 0.07 1.80 6.09 -51.93 -0.32 1.48 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.06 0.88 7.41 -51.93 -0.39 0.50 16 33 H 0.12 2.40 4.23 -51.93 -0.22 2.18 16 LS Contribution 279.07 15.07 4.21 4.21 Total: -1.00 -25.94 279.07 -7.67 -33.60 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.89 Total: 4.69 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.87 Total: -10.80 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.30 Total: -30.94 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.47 Total: -3.43 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -25.94 -7.67 -33.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.903 kcal (2) G-P(sol) polarization free energy of solvation -25.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds