Wall clock time and date at job start Mon Mar 30 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.77232 * 127.33698 * 2 1 4 4 C 1.72209 * 94.84398 * 179.97438 * 3 2 1 5 5 O 1.21831 * 127.05454 * 180.02562 * 4 3 2 6 6 N 1.34248 * 105.88577 * 359.97438 * 4 3 2 7 7 C 1.46498 * 121.37970 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.47162 * 92.71627 * 7 6 4 9 9 C 1.50694 * 115.54967 * 157.23383 * 8 7 6 10 10 H 1.07998 * 120.00212 * 146.89617 * 9 8 7 11 11 C 1.37872 * 120.00023 * 326.89736 * 9 8 7 12 12 N 1.31516 * 120.00213 * 341.03090 * 11 9 8 13 13 Si 1.86806 * 119.99986 * 161.03714 * 11 9 8 14 14 H 1.48495 * 109.47078 * 59.99774 * 13 11 9 15 15 H 1.48502 * 109.47112 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47163 * 299.99734 * 13 11 9 17 17 C 1.52997 * 117.49649 * 11.52719 * 8 7 6 18 18 C 1.52997 * 117.49529 * 302.90479 * 8 7 6 19 19 C 1.32557 * 127.34037 * 180.25497 * 2 1 3 20 20 C 1.50698 * 121.64815 * 359.97438 * 19 2 1 21 21 H 1.08995 * 109.47702 * 0.03080 * 1 2 3 22 22 H 1.09000 * 109.47030 * 120.03095 * 1 2 3 23 23 H 1.09002 * 109.47404 * 240.02905 * 1 2 3 24 24 H 1.09001 * 109.47222 * 332.72103 * 7 6 4 25 25 H 1.08998 * 109.47276 * 212.71830 * 7 6 4 26 26 H 0.96999 * 120.00204 * 185.07991 * 12 11 9 27 27 H 1.08998 * 117.50119 * 359.97438 * 17 8 7 28 28 H 1.09003 * 117.49999 * 145.02022 * 17 8 7 29 29 H 1.09001 * 117.49751 * 214.97536 * 18 8 7 30 30 H 1.08993 * 117.50474 * 0.02562 * 18 8 7 31 31 H 1.09004 * 109.46972 * 270.23635 * 20 19 2 32 32 H 1.09000 * 109.47449 * 30.23200 * 20 19 2 33 33 H 1.09004 * 109.47674 * 150.24109 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4091 0.0000 4 6 4.0344 0.4840 0.0008 5 8 5.1759 0.9098 0.0015 6 7 3.6507 -0.8024 0.0016 7 6 4.6312 -1.8909 0.0018 8 6 4.9223 -2.3149 1.4429 9 6 5.4611 -3.7118 1.6132 10 1 6.1620 -3.9274 2.4060 11 6 5.0592 -4.7148 0.7568 12 7 3.9603 -4.5735 0.0482 13 14 6.0756 -6.2747 0.6030 14 1 6.1581 -6.9441 1.9259 15 1 5.4336 -7.1894 -0.3749 16 1 7.4426 -5.9307 0.1361 17 6 4.0008 -1.7742 2.5380 18 6 5.4285 -1.2400 2.4069 19 6 2.3110 -1.0539 -0.0047 20 6 1.7707 -2.4606 -0.0104 21 1 -0.3634 1.0276 -0.0006 22 1 -0.3633 -0.5143 -0.8897 23 1 -0.3634 -0.5134 0.8902 24 1 5.5529 -1.5498 -0.4697 25 1 4.2319 -2.7398 -0.5531 26 1 3.6377 -5.3073 -0.4980 27 1 3.1875 -1.1162 2.2320 28 1 3.7839 -2.4291 3.3820 29 1 6.1509 -1.5434 3.1646 30 1 5.5538 -0.2308 2.0147 31 1 1.6368 -2.8026 1.0160 32 1 0.8114 -2.4794 -0.5275 33 1 2.4730 -3.1177 -0.5235 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:35 Heat of formation + Delta-G solvation = 8.962379 kcal Electronic energy + Delta-G solvation = -17413.241601 eV Core-core repulsion = 14759.383955 eV Total energy + Delta-G solvation = -2653.857646 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.11932 -38.73906 -37.95891 -34.38592 -33.99152 -30.45786 -29.54975 -27.74616 -25.57072 -24.25540 -23.07277 -21.25421 -20.34224 -19.09030 -18.58918 -17.56825 -17.26350 -16.67510 -15.98611 -15.42338 -14.85561 -14.77175 -14.52871 -14.17630 -14.00174 -13.56370 -13.40245 -13.21820 -12.87040 -12.72661 -12.63025 -12.43638 -12.18039 -11.98064 -11.72336 -11.46512 -11.31338 -10.95566 -10.75286 -10.27395 -9.96462 -8.71570 -8.16628 -6.22141 -0.00750 0.44768 0.88451 1.32166 1.44504 1.50263 1.56334 2.03008 2.40726 2.86112 3.51368 3.84555 4.14562 4.22697 4.35012 4.39865 4.48548 4.75550 4.81230 4.82350 4.89818 4.95212 5.02709 5.07658 5.12799 5.14760 5.29846 5.40841 5.51641 5.67918 5.88078 6.13725 6.27062 6.45851 6.71055 7.36265 8.82473 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028847 B = 0.008245 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.390437 B = 3395.171406 C = 3888.297934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.219 4.219 3 S -0.010 6.010 4 C 0.455 3.545 5 O -0.530 6.530 6 N -0.515 5.515 7 C 0.122 3.878 8 C 0.032 3.968 9 C -0.519 4.519 10 H 0.052 0.948 11 C 0.045 3.955 12 N -0.878 5.878 13 Si 0.954 3.046 14 H -0.278 1.278 15 H -0.274 1.274 16 H -0.281 1.281 17 C -0.183 4.183 18 C -0.214 4.214 19 C 0.105 3.895 20 C -0.097 4.097 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.150 0.850 26 H 0.275 0.725 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 3.531 -2.483 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.339 4.339 3 S 0.233 5.767 4 C 0.139 3.861 5 O -0.415 6.415 6 N -0.233 5.233 7 C -0.001 4.001 8 C 0.030 3.970 9 C -0.556 4.556 10 H 0.070 0.930 11 C -0.157 4.157 12 N -0.515 5.515 13 Si 0.780 3.220 14 H -0.204 1.204 15 H -0.198 1.198 16 H -0.207 1.207 17 C -0.221 4.221 18 C -0.252 4.252 19 C -0.005 4.005 20 C -0.156 4.156 21 H 0.100 0.900 22 H 0.112 0.888 23 H 0.104 0.896 24 H 0.063 0.937 25 H 0.166 0.834 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.618 5.014 -2.684 11.173 hybrid contribution 1.487 -1.837 0.313 2.384 sum -8.131 3.177 -2.371 9.046 Atomic orbital electron populations 1.20183 0.82864 1.03903 1.04097 1.23981 1.00854 0.89800 1.19227 1.84435 0.97896 1.12914 1.81409 1.21962 0.94712 0.86012 0.83417 1.90845 1.21135 1.73111 1.56450 1.46214 1.07713 1.07370 1.61975 1.21907 0.89941 0.88906 0.99387 1.19296 0.97978 0.92363 0.87316 1.20592 1.27205 0.92346 1.15457 0.93006 1.25473 0.95069 1.00777 0.94399 1.69515 1.19342 1.33082 1.29574 0.85676 0.79192 0.79091 0.78006 1.20390 1.19829 1.20652 1.22905 0.91549 1.03625 1.04048 1.22958 0.97971 0.98486 1.05755 1.19856 0.81269 0.99795 0.99530 1.20955 1.02519 0.88180 1.03951 0.89953 0.88827 0.89578 0.93694 0.83364 0.91498 0.91195 0.90697 0.90488 0.91635 0.91191 0.88116 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.96 9.56 71.24 0.68 -0.28 16 2 C -0.22 -6.38 6.72 24.54 0.16 -6.21 16 3 S -0.01 -0.32 22.97 -56.49 -1.30 -1.62 16 4 C 0.46 19.62 7.41 129.87 0.96 20.59 16 5 O -0.53 -26.18 16.27 -4.77 -0.08 -26.26 16 6 N -0.52 -21.45 1.58 -643.42 -1.02 -22.47 16 7 C 0.12 5.73 5.14 86.38 0.44 6.17 16 8 C 0.03 1.55 2.37 -52.93 -0.13 1.43 16 9 C -0.52 -26.87 9.02 25.60 0.23 -26.64 16 10 H 0.05 2.76 7.89 -2.91 -0.02 2.73 16 11 C 0.05 2.17 5.11 84.65 0.43 2.60 16 12 N -0.88 -40.50 8.82 21.45 0.19 -40.31 16 13 Si 0.95 39.18 29.58 68.60 2.03 41.21 16 14 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 C -0.18 -8.40 9.39 30.59 0.29 -8.12 16 18 C -0.21 -10.27 9.67 30.59 0.30 -9.97 16 19 C 0.11 3.66 4.91 40.71 0.20 3.86 16 20 C -0.10 -3.13 9.39 71.24 0.67 -2.46 16 21 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.09 1.40 7.99 -2.39 -0.02 1.38 16 23 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 2.25 7.74 -2.39 -0.02 2.23 16 25 H 0.15 6.99 3.63 -2.39 -0.01 6.98 16 26 H 0.27 11.87 8.32 -92.71 -0.77 11.09 16 27 H 0.07 3.09 5.86 -2.39 -0.01 3.07 16 28 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 30 H 0.07 3.26 6.09 -2.39 -0.01 3.24 16 31 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.10 2.41 7.41 -2.39 -0.02 2.39 16 33 H 0.10 3.77 4.23 -2.39 -0.01 3.76 16 Total: -1.00 -56.53 279.07 5.19 -51.33 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.13 Total: 17.14 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 4.24 Total: -19.03 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.83 Total: -62.78 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.08 Total: -26.26 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -1.30 Total: -1.62 kcal Total: -56.53 5.19 -51.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.295 kcal (2) G-P(sol) polarization free energy of solvation -56.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds