Wall clock time and date at job start Mon Mar 30 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 N 1.31668 * 125.86332 * 346.00731 * 3 2 1 5 5 C 1.33273 * 109.22180 * 180.26801 * 4 3 2 6 6 C 1.35375 * 108.41240 * 359.72598 * 5 4 3 7 7 N 1.36259 * 107.07212 * 0.02562 * 6 5 4 8 8 C 1.46498 * 126.49299 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47223 * 174.05238 * 8 7 6 10 10 C 1.50700 * 109.47334 * 54.04584 * 8 7 6 11 11 H 1.07996 * 120.00101 * 304.47099 * 10 8 7 12 12 C 1.37873 * 119.99633 * 124.46436 * 10 8 7 13 13 N 1.31515 * 120.00279 * 188.68286 * 12 10 8 14 14 Si 1.86806 * 120.00192 * 8.68908 * 12 10 8 15 15 H 1.48497 * 109.46982 * 275.21367 * 14 12 10 16 16 H 1.48497 * 109.46948 * 35.21398 * 14 12 10 17 17 H 1.48504 * 109.47225 * 155.21167 * 14 12 10 18 18 C 1.50701 * 109.46833 * 294.05190 * 8 7 6 19 19 C 1.38233 * 120.00254 * 65.88663 * 18 8 7 20 20 C 1.38240 * 119.99822 * 179.80801 * 19 18 8 21 21 C 1.38237 * 120.00285 * 0.40410 * 20 19 18 22 22 C 1.38233 * 119.99432 * 359.85387 * 21 20 19 23 23 C 1.38230 * 120.00419 * 359.95272 * 22 21 20 24 24 H 1.08002 * 125.79041 * 179.69234 * 5 4 3 25 25 H 1.07993 * 126.46305 * 180.02562 * 6 5 4 26 26 H 0.96999 * 120.00551 * 180.02562 * 13 12 10 27 27 H 1.07992 * 120.00080 * 0.02562 * 19 18 8 28 28 H 1.08003 * 119.99945 * 180.22814 * 20 19 18 29 29 H 1.07997 * 119.99886 * 179.83354 * 21 20 19 30 30 H 1.08005 * 119.99410 * 179.97438 * 22 21 20 31 31 H 1.08007 * 120.00149 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 7 3.3398 -1.0344 0.2580 5 6 4.6165 -0.6621 0.1714 6 6 4.6578 0.6503 -0.1579 7 7 3.3681 1.0751 -0.2710 8 6 2.9233 2.4283 -0.6136 9 1 1.8397 2.4359 -0.7305 10 6 3.5710 2.8582 -1.9046 11 1 4.6465 2.8420 -2.0008 12 6 2.7903 3.2722 -2.9630 13 7 3.3371 3.4836 -4.1403 14 14 0.9560 3.5330 -2.7248 15 1 0.2468 2.2384 -2.8870 16 1 0.7049 4.0677 -1.3624 17 1 0.4581 4.5002 -3.7357 18 6 3.3165 3.3799 0.4868 19 6 4.6522 3.6326 0.7376 20 6 5.0127 4.5086 1.7445 21 6 4.0377 5.1254 2.5060 22 6 2.7022 4.8685 2.2586 23 6 2.3415 3.9957 1.2492 24 1 5.4728 -1.2992 0.3366 25 1 5.5455 1.2479 -0.3036 26 1 2.7880 3.7752 -4.8848 27 1 5.4139 3.1484 0.1447 28 1 6.0562 4.7089 1.9380 29 1 4.3195 5.8077 3.2943 30 1 1.9404 5.3502 2.8538 31 1 1.2980 3.7953 1.0557 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094936964.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:26 Heat of formation + Delta-G solvation = 118.907009 kcal Electronic energy + Delta-G solvation = -17796.662828 eV Core-core repulsion = 15044.421538 eV Total energy + Delta-G solvation = -2752.241290 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61375 -38.79676 -36.16157 -34.87464 -32.55056 -30.67964 -30.46024 -29.44779 -27.54024 -23.82486 -22.69798 -22.29242 -21.27023 -20.34825 -17.81600 -17.29504 -16.47015 -15.70128 -15.36456 -14.65760 -14.61563 -14.04472 -13.86746 -13.20957 -13.11275 -13.01137 -12.77300 -12.69685 -12.37713 -12.33736 -12.22636 -11.49325 -11.26690 -10.89774 -10.73859 -10.27337 -9.97280 -9.75005 -9.16158 -8.98809 -8.53366 -8.33878 -7.95801 -6.66999 -4.74154 1.69488 1.79189 1.91362 2.66806 2.96973 3.02901 3.08582 3.17970 3.40420 3.93382 3.98984 4.09483 4.37784 4.77788 5.17530 5.24999 5.32533 5.41784 5.53894 5.60305 5.78194 5.92254 6.02225 6.04955 6.34194 6.42390 6.66546 6.82718 6.85966 6.89295 7.05777 7.18233 7.38123 7.46752 7.75088 7.88750 8.35847 8.37184 8.89246 10.42003 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.013028 B = 0.011856 C = 0.008827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.622315 B = 2361.092987 C = 3171.235802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.313 3.687 3 C 0.216 3.784 4 N -0.446 5.446 5 C -0.044 4.044 6 C 0.012 3.988 7 N -0.387 5.387 8 C 0.247 3.753 9 H 0.069 0.931 10 C -0.523 4.523 11 H 0.094 0.906 12 C 0.095 3.905 13 N -0.854 5.854 14 Si 0.856 3.144 15 H -0.265 1.265 16 H -0.258 1.258 17 H -0.273 1.273 18 C -0.064 4.064 19 C -0.091 4.091 20 C -0.124 4.124 21 C -0.133 4.133 22 C -0.122 4.122 23 C -0.122 4.122 24 H 0.174 0.826 25 H 0.177 0.823 26 H 0.277 0.723 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 1.440 9.138 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.004 4.004 3 C -0.041 4.041 4 N -0.167 5.167 5 C -0.198 4.198 6 C -0.131 4.131 7 N -0.066 5.066 8 C 0.150 3.850 9 H 0.087 0.913 10 C -0.560 4.560 11 H 0.112 0.888 12 C -0.116 4.116 13 N -0.487 5.487 14 Si 0.681 3.319 15 H -0.190 1.190 16 H -0.183 1.183 17 H -0.198 1.198 18 C -0.065 4.065 19 C -0.110 4.110 20 C -0.142 4.142 21 C -0.152 4.152 22 C -0.140 4.140 23 C -0.141 4.141 24 H 0.191 0.809 25 H 0.194 0.806 26 H 0.087 0.913 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.248 0.912 9.038 9.169 hybrid contribution -0.193 1.127 -0.415 1.216 sum 1.055 2.039 8.622 8.923 Atomic orbital electron populations 1.81201 1.10836 1.06481 1.10037 1.23469 0.89935 0.93939 0.93049 1.17194 0.85832 0.86257 1.14835 1.70118 1.02462 1.26560 1.17598 1.22249 0.93949 0.93825 1.09818 1.22894 0.88106 0.96831 1.05249 1.47235 1.05554 1.10474 1.43324 1.18707 0.96991 0.75775 0.93575 0.91341 1.20849 0.96083 1.45827 0.93273 0.88795 1.25008 0.98797 0.93353 0.94401 1.69843 1.37310 1.41035 1.00464 0.87126 0.85228 0.79913 0.79604 1.18972 1.18257 1.19788 1.20291 0.93820 0.98333 0.94056 1.20987 0.95778 0.97590 0.96595 1.21089 0.99004 0.97621 0.96455 1.20998 0.93118 1.00779 1.00270 1.20983 0.96157 0.98746 0.98159 1.21032 0.98927 0.98386 0.95773 0.80915 0.80575 0.91308 0.85826 0.86440 0.86745 0.86672 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -8.44 18.54 41.84 0.78 -7.67 16 2 C 0.31 6.43 15.07 -22.48 -0.34 6.10 16 3 C 0.22 4.37 7.66 -156.27 -1.20 3.17 16 4 N -0.45 -8.58 11.27 -12.45 -0.14 -8.72 16 5 C -0.04 -0.72 11.84 -17.95 -0.21 -0.93 16 6 C 0.01 0.20 9.97 -16.61 -0.17 0.04 16 7 N -0.39 -7.71 2.62 -111.22 -0.29 -8.00 16 8 C 0.25 5.25 2.51 -70.23 -0.18 5.08 16 9 H 0.07 1.54 3.95 -51.93 -0.21 1.33 16 10 C -0.52 -12.61 8.14 -34.44 -0.28 -12.89 16 11 H 0.09 2.37 7.75 -52.49 -0.41 1.96 16 12 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 13 N -0.85 -23.05 13.96 55.43 0.77 -22.28 16 14 Si 0.86 19.62 26.86 -169.99 -4.57 15.06 16 15 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.26 -5.65 6.94 56.52 0.39 -5.26 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C -0.06 -1.22 4.99 -104.62 -0.52 -1.74 16 19 C -0.09 -1.55 8.46 -39.58 -0.33 -1.89 16 20 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 21 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 22 C -0.12 -1.86 10.05 -39.59 -0.40 -2.26 16 23 C -0.12 -2.20 9.67 -39.58 -0.38 -2.58 16 24 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 25 H 0.18 2.56 6.66 -52.49 -0.35 2.21 16 26 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.12 1.99 5.97 -52.49 -0.31 1.68 16 28 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 31 H 0.11 1.99 7.96 -52.48 -0.42 1.57 16 LS Contribution 281.15 15.07 4.24 4.24 Total: -1.00 -27.64 281.15 -6.64 -34.28 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.53 Total: 3.16 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -4.90 Total: -10.07 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 1.12 Total: -46.66 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.57 Total: 15.06 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.64 -6.64 -34.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094936964.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.189 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds