Wall clock time and date at job start Mon Mar 30 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 N 1.31668 * 125.86332 * 346.00731 * 3 2 1 5 5 C 1.33273 * 109.22180 * 180.26801 * 4 3 2 6 6 C 1.35375 * 108.41240 * 359.72598 * 5 4 3 7 7 N 1.36259 * 107.07212 * 0.02562 * 6 5 4 8 8 C 1.46498 * 126.49299 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47223 * 174.05238 * 8 7 6 10 10 C 1.50700 * 109.47334 * 54.04584 * 8 7 6 11 11 H 1.07996 * 120.00101 * 304.47099 * 10 8 7 12 12 C 1.37873 * 119.99633 * 124.46436 * 10 8 7 13 13 N 1.31515 * 120.00279 * 188.68286 * 12 10 8 14 14 Si 1.86806 * 120.00192 * 8.68908 * 12 10 8 15 15 H 1.48497 * 109.46982 * 275.21367 * 14 12 10 16 16 H 1.48497 * 109.46948 * 35.21398 * 14 12 10 17 17 H 1.48504 * 109.47225 * 155.21167 * 14 12 10 18 18 C 1.50701 * 109.46833 * 294.05190 * 8 7 6 19 19 C 1.38233 * 120.00254 * 65.88663 * 18 8 7 20 20 C 1.38240 * 119.99822 * 179.80801 * 19 18 8 21 21 C 1.38237 * 120.00285 * 0.40410 * 20 19 18 22 22 C 1.38233 * 119.99432 * 359.85387 * 21 20 19 23 23 C 1.38230 * 120.00419 * 359.95272 * 22 21 20 24 24 H 1.08002 * 125.79041 * 179.69234 * 5 4 3 25 25 H 1.07993 * 126.46305 * 180.02562 * 6 5 4 26 26 H 0.96999 * 120.00551 * 180.02562 * 13 12 10 27 27 H 1.07992 * 120.00080 * 0.02562 * 19 18 8 28 28 H 1.08003 * 119.99945 * 180.22814 * 20 19 18 29 29 H 1.07997 * 119.99886 * 179.83354 * 21 20 19 30 30 H 1.08005 * 119.99410 * 179.97438 * 22 21 20 31 31 H 1.08007 * 120.00149 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 7 3.3398 -1.0344 0.2580 5 6 4.6165 -0.6621 0.1714 6 6 4.6578 0.6503 -0.1579 7 7 3.3681 1.0751 -0.2710 8 6 2.9233 2.4283 -0.6136 9 1 1.8397 2.4359 -0.7305 10 6 3.5710 2.8582 -1.9046 11 1 4.6465 2.8420 -2.0008 12 6 2.7903 3.2722 -2.9630 13 7 3.3371 3.4836 -4.1403 14 14 0.9560 3.5330 -2.7248 15 1 0.2468 2.2384 -2.8870 16 1 0.7049 4.0677 -1.3624 17 1 0.4581 4.5002 -3.7357 18 6 3.3165 3.3799 0.4868 19 6 4.6522 3.6326 0.7376 20 6 5.0127 4.5086 1.7445 21 6 4.0377 5.1254 2.5060 22 6 2.7022 4.8685 2.2586 23 6 2.3415 3.9957 1.2492 24 1 5.4728 -1.2992 0.3366 25 1 5.5455 1.2479 -0.3036 26 1 2.7880 3.7752 -4.8848 27 1 5.4139 3.1484 0.1447 28 1 6.0562 4.7089 1.9380 29 1 4.3195 5.8077 3.2943 30 1 1.9404 5.3502 2.8538 31 1 1.2980 3.7953 1.0557 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094936964.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:26 Heat of formation + Delta-G solvation = 104.544603 kcal Electronic energy + Delta-G solvation = -17797.285629 eV Core-core repulsion = 15044.421538 eV Total energy + Delta-G solvation = -2752.864090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.09516 -40.06940 -37.77811 -36.44573 -34.36262 -32.00176 -31.74206 -30.88883 -29.16707 -25.46814 -24.16887 -23.58195 -22.61022 -21.78552 -19.35645 -19.14177 -17.77381 -17.27821 -16.75770 -16.22602 -16.05513 -15.41262 -15.28823 -14.91490 -14.60431 -14.40731 -14.28603 -14.13571 -13.94359 -13.88402 -13.61642 -13.16104 -12.97201 -12.30713 -12.05961 -12.01147 -11.64325 -11.25139 -11.03222 -10.55653 -9.76055 -9.63083 -9.38395 -8.60848 -6.67520 0.33602 0.43504 0.56788 1.07453 1.14397 1.19324 1.20585 1.75417 1.88324 2.05300 2.45122 2.57142 2.95108 3.05243 3.71280 3.91315 4.12057 4.16282 4.22279 4.32362 4.50929 4.66682 4.71125 4.79746 5.00419 5.11725 5.21132 5.36686 5.61193 5.66024 5.72650 5.74325 5.89010 6.04276 6.18144 6.22096 6.42426 6.92003 6.98043 8.51974 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.013028 B = 0.011856 C = 0.008827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.622315 B = 2361.092987 C = 3171.235802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.315 3.685 3 C 0.187 3.813 4 N -0.454 5.454 5 C -0.032 4.032 6 C 0.012 3.988 7 N -0.395 5.395 8 C 0.257 3.743 9 H 0.051 0.949 10 C -0.515 4.515 11 H 0.078 0.922 12 C 0.053 3.947 13 N -0.900 5.900 14 Si 0.893 3.107 15 H -0.278 1.278 16 H -0.246 1.246 17 H -0.267 1.267 18 C -0.092 4.092 19 C -0.103 4.103 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.145 4.145 24 H 0.218 0.782 25 H 0.201 0.799 26 H 0.276 0.724 27 H 0.126 0.874 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 2.063 11.477 12.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.001 4.001 3 C -0.068 4.068 4 N -0.176 5.176 5 C -0.186 4.186 6 C -0.130 4.130 7 N -0.075 5.075 8 C 0.158 3.842 9 H 0.069 0.931 10 C -0.553 4.553 11 H 0.096 0.904 12 C -0.152 4.152 13 N -0.535 5.535 14 Si 0.717 3.283 15 H -0.204 1.204 16 H -0.170 1.170 17 H -0.192 1.192 18 C -0.093 4.093 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.163 4.163 24 H 0.234 0.766 25 H 0.218 0.782 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.169 0.831 29 H 0.171 0.829 30 H 0.160 0.840 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.682 1.530 11.399 11.810 hybrid contribution -0.498 0.888 -0.974 1.409 sum 2.184 2.418 10.425 10.922 Atomic orbital electron populations 1.81175 1.11176 1.06905 1.10863 1.23659 0.90247 0.93585 0.92656 1.17239 0.85762 0.86751 1.17018 1.70153 1.03663 1.26249 1.17582 1.22986 0.93992 0.93919 1.07709 1.23466 0.87678 0.97605 1.04219 1.46900 1.06659 1.09937 1.43957 1.18471 0.95693 0.76545 0.93510 0.93099 1.20954 0.95344 1.44696 0.94337 0.90417 1.25519 1.01339 0.93903 0.94459 1.69918 1.38307 1.44061 1.01219 0.86542 0.82309 0.79229 0.80184 1.20413 1.17016 1.19211 1.20166 0.95282 0.98995 0.94867 1.21127 0.94835 0.98571 0.97632 1.21495 1.01037 0.96140 0.95064 1.21488 0.92297 1.00093 1.00292 1.21330 0.97776 0.97761 0.97258 1.21146 0.98366 0.99681 0.97150 0.76595 0.78230 0.91375 0.85615 0.83093 0.82908 0.83991 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -17.80 18.54 19.00 0.35 -17.45 16 2 C 0.31 13.12 15.07 88.33 1.33 14.46 16 3 C 0.19 7.54 7.66 135.09 1.03 8.58 16 4 N -0.45 -16.86 11.27 -193.30 -2.18 -19.04 16 5 C -0.03 -0.95 11.84 83.81 0.99 0.04 16 6 C 0.01 0.39 9.97 83.34 0.83 1.22 16 7 N -0.39 -15.57 2.62 -505.80 -1.33 -16.90 16 8 C 0.26 10.97 2.51 43.50 0.11 11.08 16 9 H 0.05 2.33 3.95 -2.39 -0.01 2.32 16 10 C -0.52 -25.25 8.14 25.60 0.21 -25.04 16 11 H 0.08 3.98 7.75 -2.91 -0.02 3.96 16 12 C 0.05 2.78 5.47 84.65 0.46 3.24 16 13 N -0.90 -49.98 13.96 21.45 0.30 -49.68 16 14 Si 0.89 41.29 26.86 68.60 1.84 43.13 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.25 -10.76 6.94 99.48 0.69 -10.07 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C -0.09 -3.45 4.99 -19.87 -0.10 -3.54 16 19 C -0.10 -3.31 8.46 22.27 0.19 -3.12 16 20 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 21 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 22 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 23 C -0.14 -5.04 9.67 22.27 0.22 -4.82 16 24 H 0.22 4.40 8.06 -2.91 -0.02 4.38 16 25 H 0.20 5.34 6.66 -2.91 -0.02 5.33 16 26 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.13 3.84 5.97 -2.91 -0.02 3.83 16 28 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.10 3.65 7.96 -2.91 -0.02 3.62 16 Total: -1.00 -61.13 281.15 6.08 -55.05 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.15 Total: 11.49 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 5.95 Total: -6.61 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -2.85 Total: -103.06 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.84 Total: 43.13 kcal Total: -61.13 6.08 -55.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094936964.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.594 kcal (2) G-P(sol) polarization free energy of solvation -61.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds