Wall clock time and date at job start Mon Mar 30 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46957 * 2 1 4 4 S 1.49350 * 120.00004 * 179.97438 * 3 2 1 5 5 O 1.42104 * 108.33296 * 304.93731 * 4 3 2 6 6 C 1.76202 * 108.73352 * 62.46282 * 4 3 2 7 7 H 1.08001 * 120.00331 * 242.47111 * 6 4 3 8 8 C 1.37876 * 119.99866 * 62.47039 * 6 4 3 9 9 N 1.31522 * 119.99920 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 120.00369 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47077 * 89.99759 * 10 8 6 12 12 H 1.48498 * 109.47401 * 210.00003 * 10 8 6 13 13 H 1.48504 * 109.47199 * 330.00374 * 10 8 6 14 14 C 1.81398 * 108.33476 * 179.97438 * 4 3 2 15 15 C 1.50706 * 109.46938 * 179.97438 * 14 4 3 16 16 C 1.38237 * 119.99744 * 90.00623 * 15 14 4 17 17 C 1.38235 * 119.99712 * 180.02562 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.94731 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00223 * 270.01833 * 15 14 4 21 21 H 1.09005 * 109.46970 * 60.00682 * 1 2 3 22 22 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47072 * 300.00297 * 1 2 3 24 24 H 1.08999 * 109.47072 * 239.99703 * 2 1 3 25 25 H 1.08994 * 109.46628 * 119.99695 * 2 1 3 26 26 H 0.97000 * 119.99640 * 180.02562 * 9 8 6 27 27 H 1.08998 * 109.47029 * 60.00429 * 14 4 3 28 28 H 1.08993 * 109.46994 * 300.00077 * 14 4 3 29 29 H 1.08005 * 120.00088 * 359.97438 * 16 15 14 30 30 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 33 33 H 1.07998 * 119.99975 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.4867 1.6541 0.0006 5 8 4.0668 0.9765 1.1067 6 6 4.1847 0.9989 -1.4787 7 1 4.9235 0.2130 -1.4252 8 6 3.7875 1.4894 -2.7045 9 7 2.8881 2.4468 -2.7696 10 14 4.5279 0.7953 -4.2727 11 1 3.7071 -0.3493 -4.7433 12 1 4.5519 1.8500 -5.3179 13 1 5.9134 0.3334 -4.0038 14 6 3.7330 3.4513 -0.0004 15 6 5.2089 3.7560 0.0008 16 6 5.8869 3.8951 -1.1958 17 6 7.2408 4.1741 -1.1947 18 6 7.9165 4.3151 0.0030 19 6 7.2396 4.1712 1.1996 20 6 5.8848 3.8962 1.1985 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.6085 2.7916 -3.6320 27 1 3.2729 3.8816 0.8892 28 1 3.2737 3.8805 -0.8908 29 1 5.3589 3.7850 -2.1316 30 1 7.7706 4.2824 -2.1296 31 1 8.9742 4.5334 0.0037 32 1 7.7683 4.2769 2.1353 33 1 5.3553 3.7869 2.1334 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107931349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:36 Heat of formation + Delta-G solvation = 3.134720 kcal Electronic energy + Delta-G solvation = -16901.095849 eV Core-core repulsion = 14246.985497 eV Total energy + Delta-G solvation = -2654.110353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -38.79802 -34.58536 -33.61037 -33.18822 -32.22208 -30.50199 -28.08642 -26.61091 -26.23590 -22.17775 -21.46875 -20.63496 -18.61010 -16.57219 -16.03622 -15.52009 -14.90400 -14.73478 -14.49998 -14.00762 -13.87059 -13.17030 -13.01858 -12.76302 -12.21360 -11.95852 -11.78853 -11.41137 -11.24758 -11.14510 -11.02128 -10.79642 -10.70733 -10.59114 -10.28848 -9.92545 -9.47506 -9.38051 -8.53526 -8.18776 -7.60097 -7.11276 -6.55721 -5.46371 1.36883 1.79394 2.01927 2.93639 3.02985 3.08318 3.86635 4.19708 4.40486 4.84598 5.16986 5.27473 5.33868 5.45833 5.58794 5.80577 5.88742 5.98425 6.17577 6.23315 6.40436 6.46167 6.51492 6.58473 6.65426 6.80255 6.85814 6.88606 7.03678 7.13423 7.27966 7.29399 7.37840 7.87234 8.48831 8.69681 9.97781 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.010684 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.268884 B = 2620.166083 C = 3667.074101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.154 3.846 3 N -1.186 6.186 4 S 2.422 3.578 5 O -1.035 7.035 6 C -0.966 4.966 7 H 0.107 0.893 8 C 0.130 3.870 9 N -0.830 5.830 10 Si 0.904 3.096 11 H -0.265 1.265 12 H -0.273 1.273 13 H -0.261 1.261 14 C -0.489 4.489 15 C -0.066 4.066 16 C -0.090 4.090 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.112 4.112 21 H 0.051 0.949 22 H 0.036 0.964 23 H 0.045 0.955 24 H 0.025 0.975 25 H 0.012 0.988 26 H 0.292 0.708 27 H 0.117 0.883 28 H 0.158 0.842 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.853 4.893 -0.091 6.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.022 3.978 3 N -1.096 6.096 4 S 2.619 3.381 5 O -1.020 7.020 6 C -1.103 5.103 7 H 0.125 0.875 8 C -0.087 4.087 9 N -0.459 5.459 10 Si 0.727 3.273 11 H -0.190 1.190 12 H -0.198 1.198 13 H -0.185 1.185 14 C -0.620 4.620 15 C -0.067 4.067 16 C -0.109 4.109 17 C -0.144 4.144 18 C -0.144 4.144 19 C -0.143 4.143 20 C -0.131 4.131 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.030 0.970 26 H 0.103 0.897 27 H 0.135 0.865 28 H 0.175 0.825 29 H 0.150 0.850 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.561 5.093 0.571 6.860 hybrid contribution 0.892 -0.541 -1.485 1.815 sum 5.453 4.552 -0.914 7.162 Atomic orbital electron populations 1.21476 0.96313 0.98399 1.01480 1.20255 0.94418 0.86373 0.96729 1.74304 1.25522 1.27940 1.81860 1.08395 0.75741 0.76421 0.77498 1.93159 1.83710 1.69898 1.55237 1.30917 1.40456 1.28749 1.10218 0.87501 1.24744 0.91351 0.92360 1.00287 1.69865 1.23751 1.23105 1.29191 0.86365 0.80717 0.79888 0.80296 1.18994 1.19773 1.18530 1.28226 0.97971 1.24149 1.11604 1.19198 0.93279 1.00452 0.93772 1.21226 0.94410 0.97044 0.98217 1.21111 0.94506 1.00832 0.97929 1.21083 0.99465 1.01142 0.92728 1.21023 0.94236 1.01079 0.97968 1.21140 0.94883 0.99457 0.97598 0.92937 0.94510 0.93551 0.95675 0.96989 0.89688 0.86468 0.82456 0.85017 0.86204 0.86444 0.86202 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.15 3.82 6.55 -4.04 -0.03 3.80 16 3 N -1.19 -31.29 10.50 -10.62 -0.11 -31.40 16 4 S 2.42 61.98 3.35 -107.50 -0.36 61.62 16 5 O -1.03 -29.76 17.74 -35.23 -0.63 -30.38 16 6 C -0.97 -24.89 9.08 30.60 0.28 -24.62 16 7 H 0.11 2.82 7.81 -52.49 -0.41 2.41 16 8 C 0.13 3.12 5.19 -17.82 -0.09 3.03 16 9 N -0.83 -19.59 11.67 55.43 0.65 -18.95 16 10 Si 0.90 18.63 29.54 -169.99 -5.02 13.60 16 11 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 13 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 14 C -0.49 -10.35 6.00 36.01 0.22 -10.13 16 15 C -0.07 -1.30 5.04 -104.62 -0.53 -1.83 16 16 C -0.09 -1.68 9.55 -39.58 -0.38 -2.06 16 17 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 18 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 19 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 20 C -0.11 -2.01 9.70 -39.58 -0.38 -2.40 16 21 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 25 H 0.01 0.30 8.00 -51.93 -0.42 -0.11 16 26 H 0.29 6.32 8.31 -40.82 -0.34 5.98 16 27 H 0.12 2.21 8.08 -51.92 -0.42 1.79 16 28 H 0.16 3.32 6.73 -51.93 -0.35 2.97 16 29 H 0.13 2.50 7.79 -52.48 -0.41 2.09 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 296.86 15.07 4.47 4.47 Total: -1.00 -30.51 296.86 -7.23 -37.74 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.51 Total: 6.50 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: -1.73 Total: -43.21 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.54 Total: -50.35 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.63 Total: -30.38 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal Atomic # 16 Polarization: 61.98 SS G_CDS: -0.36 Total: 61.62 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.51 -7.23 -37.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107931349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.874 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds