Wall clock time and date at job start Mon Mar 30 2020 06:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46957 * 2 1 4 4 S 1.49350 * 120.00004 * 179.97438 * 3 2 1 5 5 O 1.42104 * 108.33296 * 304.93731 * 4 3 2 6 6 C 1.76202 * 108.73352 * 62.46282 * 4 3 2 7 7 H 1.08001 * 120.00331 * 242.47111 * 6 4 3 8 8 C 1.37876 * 119.99866 * 62.47039 * 6 4 3 9 9 N 1.31522 * 119.99920 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 120.00369 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47077 * 89.99759 * 10 8 6 12 12 H 1.48498 * 109.47401 * 210.00003 * 10 8 6 13 13 H 1.48504 * 109.47199 * 330.00374 * 10 8 6 14 14 C 1.81398 * 108.33476 * 179.97438 * 4 3 2 15 15 C 1.50706 * 109.46938 * 179.97438 * 14 4 3 16 16 C 1.38237 * 119.99744 * 90.00623 * 15 14 4 17 17 C 1.38235 * 119.99712 * 180.02562 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.94731 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00223 * 270.01833 * 15 14 4 21 21 H 1.09005 * 109.46970 * 60.00682 * 1 2 3 22 22 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47072 * 300.00297 * 1 2 3 24 24 H 1.08999 * 109.47072 * 239.99703 * 2 1 3 25 25 H 1.08994 * 109.46628 * 119.99695 * 2 1 3 26 26 H 0.97000 * 119.99640 * 180.02562 * 9 8 6 27 27 H 1.08998 * 109.47029 * 60.00429 * 14 4 3 28 28 H 1.08993 * 109.46994 * 300.00077 * 14 4 3 29 29 H 1.08005 * 120.00088 * 359.97438 * 16 15 14 30 30 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 33 33 H 1.07998 * 119.99975 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.4867 1.6541 0.0006 5 8 4.0668 0.9765 1.1067 6 6 4.1847 0.9989 -1.4787 7 1 4.9235 0.2130 -1.4252 8 6 3.7875 1.4894 -2.7045 9 7 2.8881 2.4468 -2.7696 10 14 4.5279 0.7953 -4.2727 11 1 3.7071 -0.3493 -4.7433 12 1 4.5519 1.8500 -5.3179 13 1 5.9134 0.3334 -4.0038 14 6 3.7330 3.4513 -0.0004 15 6 5.2089 3.7560 0.0008 16 6 5.8869 3.8951 -1.1958 17 6 7.2408 4.1741 -1.1947 18 6 7.9165 4.3151 0.0030 19 6 7.2396 4.1712 1.1996 20 6 5.8848 3.8962 1.1985 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.6085 2.7916 -3.6320 27 1 3.2729 3.8816 0.8892 28 1 3.2737 3.8805 -0.8908 29 1 5.3589 3.7850 -2.1316 30 1 7.7706 4.2824 -2.1296 31 1 8.9742 4.5334 0.0037 32 1 7.7683 4.2769 2.1353 33 1 5.3553 3.7869 2.1334 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107931349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:35 Heat of formation + Delta-G solvation = -17.252071 kcal Electronic energy + Delta-G solvation = -16901.979887 eV Core-core repulsion = 14246.985497 eV Total energy + Delta-G solvation = -2654.994390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10554 -36.67847 -35.50263 -35.03208 -33.70625 -31.78440 -29.93361 -28.21180 -28.06584 -23.46955 -23.16468 -22.16244 -20.51550 -18.27715 -17.59526 -17.35685 -16.51285 -16.24795 -16.16520 -15.73807 -15.66812 -14.96689 -14.30739 -14.16379 -13.75474 -13.60618 -13.49774 -13.16161 -13.01207 -12.92942 -12.83980 -12.34350 -12.20547 -12.11299 -11.89524 -11.75829 -11.39043 -11.17120 -9.82717 -9.61471 -9.60157 -9.04973 -8.49459 -7.40153 -0.35954 0.49965 0.56711 1.29883 1.35580 1.45364 2.16283 2.55569 2.86936 3.12864 3.49578 3.69548 3.95486 4.07893 4.16853 4.30148 4.34353 4.58610 4.61335 4.69479 4.76744 4.79764 4.82104 5.03638 5.08435 5.16705 5.28181 5.40144 5.53037 5.53935 5.59305 5.67260 5.88915 6.11064 6.52306 6.79160 8.18881 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.010684 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.268884 B = 2620.166083 C = 3667.074101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.139 3.861 3 N -1.204 6.204 4 S 2.399 3.601 5 O -1.080 7.080 6 C -0.991 4.991 7 H 0.088 0.912 8 C 0.103 3.897 9 N -0.841 5.841 10 Si 0.953 3.047 11 H -0.268 1.268 12 H -0.246 1.246 13 H -0.265 1.265 14 C -0.460 4.460 15 C -0.098 4.098 16 C -0.109 4.109 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.125 4.125 20 C -0.131 4.131 21 H 0.048 0.952 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.012 0.988 25 H -0.001 1.001 26 H 0.303 0.697 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.344 6.164 -0.979 8.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.008 3.992 3 N -1.114 6.114 4 S 2.601 3.399 5 O -1.065 7.065 6 C -1.128 5.128 7 H 0.106 0.894 8 C -0.114 4.114 9 N -0.470 5.470 10 Si 0.774 3.226 11 H -0.193 1.193 12 H -0.169 1.169 13 H -0.189 1.189 14 C -0.594 4.594 15 C -0.100 4.100 16 C -0.128 4.128 17 C -0.146 4.146 18 C -0.132 4.132 19 C -0.142 4.142 20 C -0.151 4.151 21 H 0.067 0.933 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.030 0.970 25 H 0.017 0.983 26 H 0.114 0.886 27 H 0.153 0.847 28 H 0.174 0.826 29 H 0.139 0.861 30 H 0.167 0.833 31 H 0.178 0.822 32 H 0.172 0.828 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.019 6.336 -0.313 8.744 hybrid contribution 0.501 -0.853 -1.163 1.527 sum 6.520 5.483 -1.476 8.646 Atomic orbital electron populations 1.21409 0.93088 1.00711 1.01443 1.20464 0.97257 0.86031 0.95480 1.74405 1.26175 1.28487 1.82299 1.08787 0.75378 0.78708 0.76988 1.93104 1.84157 1.72581 1.56658 1.30669 1.40894 1.30162 1.11074 0.89373 1.25303 0.91512 0.92480 1.02110 1.69857 1.23610 1.22989 1.30506 0.85630 0.79590 0.79831 0.77556 1.19311 1.16913 1.18865 1.27930 1.00186 1.18888 1.12393 1.19237 0.92357 1.03205 0.95223 1.21310 0.95956 0.98190 0.97361 1.21511 0.93406 0.99671 1.00051 1.21610 1.01397 0.98531 0.91668 1.21478 0.93171 0.99489 1.00084 1.21389 0.96500 1.00110 0.97095 0.93303 0.91088 0.93120 0.96990 0.98326 0.88584 0.84748 0.82555 0.86101 0.83257 0.82190 0.82780 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 10.24 71.98 0.74 -3.65 16 2 C 0.14 7.13 6.55 86.38 0.57 7.69 16 3 N -1.20 -65.40 10.50 -187.50 -1.97 -67.37 16 4 S 2.40 127.10 3.35 -56.49 -0.19 126.92 16 5 O -1.08 -64.93 17.74 -148.98 -2.64 -67.57 16 6 C -0.99 -52.71 9.08 67.73 0.62 -52.10 16 7 H 0.09 4.88 7.81 -2.91 -0.02 4.86 16 8 C 0.10 4.96 5.19 84.65 0.44 5.40 16 9 N -0.84 -39.67 11.67 21.45 0.25 -39.42 16 10 Si 0.95 37.54 29.54 68.60 2.03 39.56 16 11 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 12 H -0.25 -8.57 7.11 99.48 0.71 -7.87 16 13 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 14 C -0.46 -19.78 6.00 71.24 0.43 -19.35 16 15 C -0.10 -3.89 5.04 -19.86 -0.10 -3.99 16 16 C -0.11 -3.98 9.55 22.27 0.21 -3.77 16 17 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 18 C -0.11 -2.88 10.05 22.27 0.22 -2.66 16 19 C -0.12 -3.47 10.05 22.27 0.22 -3.25 16 20 C -0.13 -4.63 9.70 22.27 0.22 -4.41 16 21 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 22 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.01 0.63 7.86 -2.39 -0.02 0.61 16 25 H 0.00 -0.07 8.00 -2.39 -0.02 -0.09 16 26 H 0.30 12.86 8.31 -92.71 -0.77 12.09 16 27 H 0.13 5.15 8.08 -2.39 -0.02 5.14 16 28 H 0.16 6.71 6.73 -2.39 -0.02 6.69 16 29 H 0.12 4.58 7.79 -2.91 -0.02 4.55 16 30 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 31 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -67.89 296.86 2.34 -65.55 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.08 Total: 25.93 kcal Atomic # 6 Polarization: -87.38 SS G_CDS: 3.78 Total: -83.60 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -1.72 Total: -106.79 kcal Atomic # 8 Polarization: -64.93 SS G_CDS: -2.64 Total: -67.57 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 16 Polarization: 127.10 SS G_CDS: -0.19 Total: 126.92 kcal Total: -67.89 2.34 -65.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107931349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.296 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds