Wall clock time and date at job start Mon Mar 30 2020 06:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46957 * 2 1 4 4 S 1.49350 * 120.00004 * 179.97438 * 3 2 1 5 5 O 1.42106 * 108.33351 * 55.05959 * 4 3 2 6 6 C 1.76199 * 108.73375 * 297.53265 * 4 3 2 7 7 H 1.07994 * 120.00364 * 117.52726 * 6 4 3 8 8 C 1.37880 * 119.99575 * 297.53195 * 6 4 3 9 9 N 1.31516 * 120.00438 * 359.97438 * 8 6 4 10 10 Si 1.86805 * 120.00001 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46787 * 89.99839 * 10 8 6 12 12 H 1.48496 * 109.47081 * 209.99992 * 10 8 6 13 13 H 1.48506 * 109.47081 * 330.00126 * 10 8 6 14 14 C 1.81398 * 108.33476 * 179.97438 * 4 3 2 15 15 C 1.50706 * 109.46938 * 179.97438 * 14 4 3 16 16 C 1.38237 * 119.99744 * 90.00623 * 15 14 4 17 17 C 1.38235 * 119.99712 * 180.02562 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.94731 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00223 * 270.01833 * 15 14 4 21 21 H 1.08999 * 109.47072 * 300.00297 * 1 2 3 22 22 H 1.09005 * 109.46970 * 60.00682 * 1 2 3 23 23 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47072 * 239.99703 * 2 1 3 25 25 H 1.08994 * 109.46628 * 119.99695 * 2 1 3 26 26 H 0.96996 * 120.00065 * 180.02562 * 9 8 6 27 27 H 1.08998 * 109.47029 * 60.00429 * 14 4 3 28 28 H 1.08993 * 109.46994 * 300.00077 * 14 4 3 29 29 H 1.08005 * 120.00088 * 359.97438 * 16 15 14 30 30 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 33 33 H 1.07998 * 119.99975 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.4867 1.6541 0.0006 5 8 4.0678 0.9761 -1.1049 6 6 4.1834 0.9994 1.4806 7 1 4.9223 0.2136 1.4281 8 6 3.7851 1.4905 2.7059 9 7 2.8856 2.4478 2.7700 10 14 4.5232 0.7959 4.2752 11 1 5.7365 1.5718 4.6371 12 1 3.5289 0.8908 5.3740 13 1 4.8909 -0.6270 4.0618 14 6 3.7330 3.4513 -0.0004 15 6 5.2089 3.7560 0.0008 16 6 5.8869 3.8951 -1.1958 17 6 7.2408 4.1741 -1.1947 18 6 7.9165 4.3151 0.0030 19 6 7.2396 4.1712 1.1996 20 6 5.8848 3.8962 1.1985 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.6058 2.7934 3.6320 27 1 3.2729 3.8816 0.8892 28 1 3.2737 3.8805 -0.8908 29 1 5.3589 3.7850 -2.1316 30 1 7.7706 4.2824 -2.1296 31 1 8.9742 4.5334 0.0037 32 1 7.7683 4.2769 2.1353 33 1 5.3553 3.7869 2.1334 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107931351.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:39 Heat of formation + Delta-G solvation = -17.255971 kcal Electronic energy + Delta-G solvation = -16902.608615 eV Core-core repulsion = 14247.614056 eV Total energy + Delta-G solvation = -2654.994559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.10727 -36.67744 -35.50288 -35.03238 -33.70735 -31.78568 -29.93313 -28.21315 -28.06620 -23.47107 -23.16423 -22.16269 -20.51580 -18.27697 -17.59687 -17.35726 -16.51300 -16.24738 -16.16432 -15.73915 -15.66784 -14.96712 -14.30965 -14.16410 -13.75735 -13.60718 -13.49884 -13.14177 -13.00439 -12.93002 -12.83684 -12.38070 -12.20633 -12.11006 -11.89228 -11.75942 -11.39528 -11.15478 -9.82907 -9.61488 -9.60262 -9.05001 -8.49494 -7.40291 -0.35909 0.49773 0.56651 1.29740 1.35664 1.45596 2.16087 2.55709 2.86846 3.12880 3.49506 3.69593 3.95433 4.07824 4.16667 4.30030 4.34357 4.58649 4.61162 4.69419 4.76589 4.79856 4.82183 5.03726 5.08337 5.16532 5.28042 5.40200 5.53148 5.53853 5.59210 5.67153 5.88821 6.10889 6.52299 6.79114 8.18806 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.010683 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.088145 B = 2620.236389 C = 3667.074824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.139 3.861 3 N -1.204 6.204 4 S 2.399 3.601 5 O -1.080 7.080 6 C -0.990 4.990 7 H 0.088 0.912 8 C 0.103 3.897 9 N -0.841 5.841 10 Si 0.953 3.047 11 H -0.244 1.244 12 H -0.259 1.259 13 H -0.276 1.276 14 C -0.460 4.460 15 C -0.098 4.098 16 C -0.131 4.131 17 C -0.124 4.124 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.109 4.109 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.070 0.930 24 H -0.002 1.002 25 H 0.012 0.988 26 H 0.303 0.697 27 H 0.156 0.844 28 H 0.134 0.866 29 H 0.125 0.875 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.396 6.198 0.968 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.008 3.992 3 N -1.114 6.114 4 S 2.601 3.399 5 O -1.065 7.065 6 C -1.128 5.128 7 H 0.106 0.894 8 C -0.114 4.114 9 N -0.470 5.470 10 Si 0.774 3.226 11 H -0.167 1.167 12 H -0.182 1.182 13 H -0.201 1.201 14 C -0.594 4.594 15 C -0.100 4.100 16 C -0.151 4.151 17 C -0.142 4.142 18 C -0.132 4.132 19 C -0.146 4.146 20 C -0.128 4.128 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.017 0.983 25 H 0.030 0.970 26 H 0.114 0.886 27 H 0.174 0.826 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.172 0.828 31 H 0.178 0.822 32 H 0.166 0.834 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.068 6.367 0.303 8.800 hybrid contribution 0.502 -0.848 1.169 1.528 sum 6.569 5.520 1.472 8.706 Atomic orbital electron populations 1.21409 0.93076 1.00717 1.01443 1.20466 0.97262 0.86027 0.95485 1.74407 1.26180 1.28491 1.82283 1.08799 0.75385 0.78693 0.76991 1.93103 1.84130 1.72576 1.56698 1.30671 1.40891 1.30124 1.11087 0.89386 1.25306 0.91467 0.92513 1.02128 1.69853 1.23521 1.23043 1.30542 0.85626 0.80049 0.79643 0.77285 1.16734 1.18246 1.20061 1.27933 1.00182 1.18926 1.12379 1.19234 0.92355 1.03194 0.95210 1.21392 0.96495 1.00082 0.97109 1.21477 0.93187 0.99464 1.00066 1.21608 1.01395 0.98524 0.91653 1.21502 0.93393 0.99715 1.00036 1.21303 0.95955 0.98216 0.97335 0.93303 0.93122 0.91077 0.98337 0.96978 0.88594 0.82571 0.84745 0.85701 0.82760 0.82186 0.83355 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 10.24 71.98 0.74 -3.65 16 2 C 0.14 7.12 6.55 86.38 0.57 7.69 16 3 N -1.20 -65.41 10.50 -187.50 -1.97 -67.38 16 4 S 2.40 127.12 3.34 -56.49 -0.19 126.93 16 5 O -1.08 -64.94 17.74 -148.98 -2.64 -67.58 16 6 C -0.99 -52.71 9.08 67.73 0.62 -52.09 16 7 H 0.09 4.88 7.81 -2.91 -0.02 4.86 16 8 C 0.10 4.96 5.19 84.66 0.44 5.40 16 9 N -0.84 -39.70 11.68 21.45 0.25 -39.45 16 10 Si 0.95 37.52 29.54 68.60 2.03 39.54 16 11 H -0.24 -8.71 7.11 99.48 0.71 -8.00 16 12 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 13 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 14 C -0.46 -19.79 6.01 71.24 0.43 -19.36 16 15 C -0.10 -3.88 5.04 -19.86 -0.10 -3.98 16 16 C -0.13 -4.62 9.70 22.27 0.22 -4.40 16 17 C -0.12 -3.46 10.05 22.27 0.22 -3.24 16 18 C -0.11 -2.87 10.05 22.27 0.22 -2.65 16 19 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 20 C -0.11 -3.99 9.55 22.27 0.21 -3.77 16 21 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.00 -0.08 8.00 -2.39 -0.02 -0.10 16 25 H 0.01 0.63 7.86 -2.39 -0.02 0.62 16 26 H 0.30 12.87 8.31 -92.71 -0.77 12.10 16 27 H 0.16 6.70 6.74 -2.39 -0.02 6.68 16 28 H 0.13 5.16 8.09 -2.39 -0.02 5.14 16 29 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 31 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.12 4.58 7.79 -2.91 -0.02 4.56 16 Total: -1.00 -67.86 296.87 2.34 -65.52 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 1.08 Total: 26.00 kcal Atomic # 6 Polarization: -87.36 SS G_CDS: 3.78 Total: -83.57 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -1.72 Total: -106.83 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -2.64 Total: -67.58 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.54 kcal Atomic # 16 Polarization: 127.12 SS G_CDS: -0.19 Total: 126.93 kcal Total: -67.86 2.34 -65.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107931351.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.262 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds