Wall clock time and date at job start Mon Mar 30 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38241 * 120.00931 * 2 1 4 4 C 1.38212 * 120.01387 * 180.25158 * 3 2 1 5 5 C 1.50701 * 119.98823 * 179.72703 * 4 3 2 6 6 N 1.46901 * 109.46921 * 269.72665 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47279 * 325.00167 * 7 6 5 9 9 C 1.52995 * 109.46946 * 85.00144 * 7 6 5 10 10 C 1.50701 * 109.46893 * 205.00308 * 7 6 5 11 11 H 1.07996 * 120.00253 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99674 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00353 * 359.97438 * 12 10 7 14 14 Si 1.86796 * 119.99967 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47200 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47268 * 119.99842 * 14 12 10 17 17 H 1.48506 * 109.47301 * 239.99804 * 14 12 10 18 18 C 1.38271 * 120.02863 * 359.45432 * 4 3 2 19 19 C 1.38189 * 120.01045 * 0.25103 * 18 4 3 20 20 C 1.38329 * 120.00676 * 179.68243 * 2 1 3 21 21 Cl 1.73603 * 120.01103 * 0.04704 * 20 2 1 22 22 H 1.09001 * 109.47214 * 270.32094 * 1 2 3 23 23 H 1.09001 * 109.46874 * 30.31380 * 1 2 3 24 24 H 1.08990 * 109.47170 * 150.31411 * 1 2 3 25 25 H 1.08000 * 119.99155 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47060 * 29.72846 * 5 4 3 27 27 H 1.09001 * 109.47380 * 149.72933 * 5 4 3 28 28 H 1.00899 * 111.00283 * 303.95218 * 6 5 4 29 29 H 1.09001 * 109.47056 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47395 * 299.99746 * 9 7 6 31 31 H 1.09003 * 109.47112 * 59.99921 * 9 7 6 32 32 H 0.97002 * 120.00598 * 179.97438 * 13 12 10 33 33 H 1.07999 * 119.99735 * 180.27335 * 18 4 3 34 34 H 1.07995 * 120.01195 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5805 1.1972 -0.0053 5 6 4.3336 2.5025 -0.0115 6 7 4.5788 2.9198 -1.3985 7 6 5.3121 4.1919 -1.4437 8 1 4.9937 4.8246 -0.6152 9 6 6.8133 3.9194 -1.3296 10 6 5.0260 4.8905 -2.7480 11 1 4.3652 4.4353 -3.4708 12 6 5.6079 6.1108 -3.0185 13 7 6.4123 6.6654 -2.1382 14 14 5.2539 6.9765 -4.6355 15 1 4.3250 6.1493 -5.4468 16 1 4.6324 8.2976 -4.3640 17 1 6.5233 7.1705 -5.3814 18 6 4.2726 0.0002 0.0009 19 6 3.5826 -1.1971 0.0070 20 6 2.1988 -1.1979 0.0066 21 17 1.3312 -2.7016 0.0137 22 1 -0.3634 0.0058 1.0276 23 1 -0.3633 0.8872 -0.5187 24 1 -0.3633 -0.8927 -0.5089 25 1 1.6584 2.1324 0.0004 26 1 3.7441 3.2645 0.4984 27 1 5.2859 2.3751 0.5033 28 1 5.0681 2.2015 -1.9111 29 1 7.3575 4.8632 -1.3637 30 1 7.0202 3.4141 -0.3863 31 1 7.1317 3.2867 -2.1582 32 1 6.8220 7.5238 -2.3286 33 1 5.3526 0.0009 0.0012 34 1 4.1231 -2.1320 0.0123 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134970468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:33 Heat of formation + Delta-G solvation = -11.552344 kcal Electronic energy + Delta-G solvation = -15869.216525 eV Core-core repulsion = 13212.425587 eV Total energy + Delta-G solvation = -2656.790938 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56737 -37.97721 -37.24297 -34.85417 -33.65644 -32.40872 -29.73865 -27.86397 -27.23911 -25.79256 -23.22941 -22.17718 -21.48819 -18.45065 -17.74587 -16.95609 -16.79176 -16.16546 -15.69089 -15.13724 -14.94958 -14.71931 -14.27216 -14.09364 -13.63448 -13.51640 -13.29731 -13.09734 -12.90476 -12.77585 -12.52632 -12.39298 -12.23325 -12.14804 -12.08418 -11.73085 -11.61920 -11.02462 -10.48230 -9.77291 -9.50608 -8.95631 -8.09004 -6.20000 0.17138 0.35363 1.17781 1.42612 1.44813 1.56901 2.44479 2.63014 3.19522 3.70515 3.76673 3.87174 4.02058 4.30691 4.34657 4.50221 4.65608 4.71470 4.74965 4.78859 4.84816 4.89771 5.00204 5.09805 5.24481 5.25229 5.40446 5.41787 5.66038 5.71114 5.82084 5.88304 6.27549 6.63289 6.80371 6.94739 7.50077 8.96484 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.037199 B = 0.004114 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.530426 B = 6804.703287 C = 7154.519113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.100 4.100 4 C -0.071 4.071 5 C 0.099 3.901 6 N -0.680 5.680 7 C 0.214 3.786 8 H 0.005 0.995 9 C -0.157 4.157 10 C -0.514 4.514 11 H 0.053 0.947 12 C 0.010 3.990 13 N -0.922 5.922 14 Si 0.959 3.041 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.280 1.280 18 C -0.114 4.114 19 C -0.106 4.106 20 C -0.051 4.051 21 Cl -0.067 7.067 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.131 0.869 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.332 0.668 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.140 0.860 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -15.908 5.837 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 C -0.119 4.119 4 C -0.072 4.072 5 C -0.029 4.029 6 N -0.310 5.310 7 C 0.106 3.894 8 H 0.023 0.977 9 C -0.216 4.216 10 C -0.552 4.552 11 H 0.071 0.929 12 C -0.189 4.189 13 N -0.563 5.563 14 Si 0.785 3.215 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.078 4.078 21 Cl -0.038 7.038 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.149 0.851 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.149 0.851 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.158 0.842 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.633 -15.573 5.794 18.725 hybrid contribution 0.986 0.431 -0.441 1.163 sum -7.647 -15.143 5.352 17.788 Atomic orbital electron populations 1.20895 0.88936 1.03876 1.03594 1.19982 0.97841 0.91015 0.99454 1.21007 0.93540 0.97662 0.99696 1.19997 0.94211 0.94753 0.98194 1.20847 0.97589 0.93310 0.91193 1.60722 1.53408 1.05515 1.11383 1.18978 0.88505 0.86356 0.95563 0.97702 1.22241 1.00988 1.01165 0.97229 1.21469 1.26816 1.03901 1.03048 0.92854 1.25690 0.95056 0.97965 1.00139 1.70008 1.32033 1.17890 1.36343 0.85486 0.77887 0.78214 0.79884 1.19424 1.20741 1.20614 1.21162 1.00778 0.91025 1.00282 1.21181 0.91908 0.99423 0.99962 1.20918 0.92724 0.86781 1.07398 1.98336 1.76872 1.31624 1.96977 0.89638 0.90512 0.90573 0.85104 0.91588 0.94688 0.85110 0.91960 0.95371 0.94906 0.93006 0.84238 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 9.61 71.24 0.68 -1.53 16 2 C -0.08 -1.99 5.88 -19.84 -0.12 -2.11 16 3 C -0.10 -2.77 9.36 22.26 0.21 -2.56 16 4 C -0.07 -2.07 5.39 -19.86 -0.11 -2.18 16 5 C 0.10 3.42 5.61 85.56 0.48 3.90 16 6 N -0.68 -28.24 6.22 -499.44 -3.11 -31.35 16 7 C 0.21 10.71 2.57 44.17 0.11 10.83 16 8 H 0.01 0.28 7.80 -2.39 -0.02 0.26 16 9 C -0.16 -7.40 8.94 71.98 0.64 -6.75 16 10 C -0.51 -28.46 8.84 25.60 0.23 -28.23 16 11 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 12 C 0.01 0.53 5.30 84.66 0.45 0.98 16 13 N -0.92 -52.84 11.32 21.45 0.24 -52.60 16 14 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 C -0.11 -2.86 9.70 22.27 0.22 -2.64 16 19 C -0.11 -2.40 9.83 22.29 0.22 -2.18 16 20 C -0.05 -1.21 6.31 22.33 0.14 -1.06 16 21 Cl -0.07 -1.35 27.30 -2.72 -0.07 -1.43 16 22 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 24 H 0.08 1.36 6.90 -2.39 -0.02 1.35 16 25 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 26 H 0.07 2.36 8.00 -2.39 -0.02 2.34 16 27 H 0.04 1.17 7.38 -2.39 -0.02 1.15 16 28 H 0.33 13.10 8.47 -89.69 -0.76 12.34 16 29 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 30 H 0.03 1.15 7.45 -2.39 -0.02 1.14 16 31 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 32 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -59.02 299.77 2.58 -56.43 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.34 Total: 16.56 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 3.16 Total: -33.54 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.86 Total: -83.95 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.43 kcal Total: -59.02 2.58 -56.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134970468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.883 kcal (2) G-P(sol) polarization free energy of solvation -59.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds