Wall clock time and date at job start Mon Mar 30 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.50699 * 109.47053 * 184.99965 * 3 2 1 6 6 H 1.07997 * 120.00044 * 239.99782 * 5 3 2 7 7 C 1.37874 * 119.99795 * 60.00183 * 5 3 2 8 8 N 1.31514 * 120.00136 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99956 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47276 * 90.00176 * 9 7 5 11 11 H 1.48508 * 109.47437 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47553 * 330.00304 * 9 7 5 13 13 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 14 14 C 1.39749 * 120.00376 * 274.99552 * 13 3 2 15 15 C 1.38890 * 120.07601 * 0.02562 * 14 13 3 16 16 C 1.38116 * 119.93695 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.95198 * 179.97438 * 16 15 14 18 18 C 1.38291 * 120.09562 * 0.02590 * 16 15 14 19 19 C 1.38271 * 120.15491 * 359.97336 * 18 16 15 20 20 C 1.38208 * 120.06483 * 359.72091 * 19 18 16 21 21 Cl 1.73596 * 120.05202 * 180.29619 * 20 19 18 22 22 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 26 26 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 27 27 H 0.97009 * 119.99937 * 179.97438 * 8 7 5 28 28 H 0.96999 * 119.99886 * 95.00381 * 13 3 2 29 29 H 1.08001 * 120.02574 * 359.97291 * 15 14 13 30 30 H 1.08996 * 109.46878 * 90.00058 * 17 16 15 31 31 H 1.08996 * 109.47141 * 210.00715 * 17 16 15 32 32 H 1.09006 * 109.47110 * 330.00471 * 17 16 15 33 33 H 1.08000 * 119.92327 * 179.97438 * 18 16 15 34 34 H 1.08003 * 119.96377 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8813 -1.3818 10 1 6.5548 -0.3502 -0.7603 11 1 6.3829 0.9225 -2.8174 12 1 6.5569 2.0737 -0.6902 13 7 1.6524 2.0974 1.2518 14 6 0.3902 2.6853 1.3713 15 6 -0.4983 2.6492 0.3044 16 6 -1.7451 3.2307 0.4258 17 6 -2.7092 3.1922 -0.7318 18 6 -2.1098 3.8490 1.6078 19 6 -1.2283 3.8873 2.6724 20 6 0.0187 3.3020 2.5602 21 17 1.1222 3.3434 3.8997 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8292 -0.0602 -2.9504 28 1 2.2719 2.1231 1.9978 29 1 -0.2143 2.1669 -0.6193 30 1 -3.3226 2.2937 -0.6641 31 1 -3.3504 4.0731 -0.7002 32 1 -2.1520 3.1819 -1.6686 33 1 -3.0854 4.3032 1.6995 34 1 -1.5165 4.3707 3.5942 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232243991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:01 Heat of formation + Delta-G solvation = 5.858020 kcal Electronic energy + Delta-G solvation = -16729.611860 eV Core-core repulsion = 14073.575893 eV Total energy + Delta-G solvation = -2656.035968 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.30808 -36.15497 -35.98535 -33.04698 -32.01824 -30.79101 -29.16083 -26.59515 -26.02271 -23.11917 -22.17465 -20.75588 -19.42963 -17.21360 -16.33470 -15.53477 -15.28772 -14.52395 -14.11552 -13.76005 -13.61688 -13.18620 -12.88479 -12.57578 -12.39231 -12.00223 -11.75031 -11.38775 -11.32064 -11.02028 -10.94478 -10.81973 -10.72354 -10.44602 -10.23245 -10.14648 -9.74005 -9.35954 -9.02136 -8.48707 -8.11516 -6.58175 -6.19834 -4.27825 1.71469 2.08261 2.72076 3.21318 3.28422 3.31640 4.20171 4.22665 4.48524 5.12028 5.20108 5.25701 5.60417 5.69513 5.84874 5.93155 6.00456 6.17586 6.22275 6.30255 6.41667 6.46242 6.66708 6.71884 6.88784 6.92727 7.06861 7.17025 7.29459 7.46149 7.63635 7.77775 8.03398 8.27556 8.62735 8.84721 9.39205 10.85574 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.022124 B = 0.007211 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.281842 B = 3881.844845 C = 4709.318575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C 0.272 3.728 4 H 0.042 0.958 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.714 5.714 14 C 0.252 3.748 15 C -0.192 4.192 16 C -0.040 4.040 17 C -0.113 4.113 18 C -0.196 4.196 19 C -0.061 4.061 20 C -0.142 4.142 21 Cl -0.092 7.092 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.030 0.970 25 H 0.101 0.899 26 H 0.035 0.965 27 H 0.265 0.735 28 H 0.394 0.606 29 H 0.142 0.858 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 4.048 5.101 11.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C 0.169 3.831 4 H 0.059 0.941 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.336 5.336 14 C 0.140 3.860 15 C -0.215 4.215 16 C -0.041 4.041 17 C -0.169 4.169 18 C -0.217 4.217 19 C -0.080 4.080 20 C -0.174 4.174 21 Cl -0.064 7.064 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.119 0.881 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.229 0.771 29 H 0.160 0.840 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.830 3.826 4.815 10.760 hybrid contribution 1.368 -0.076 0.363 1.417 sum -7.462 3.750 5.178 9.826 Atomic orbital electron populations 1.22205 0.98958 0.99260 1.00481 1.22029 0.92229 1.00220 1.02708 1.18806 0.94696 0.88829 0.80752 0.94067 1.21210 0.90713 1.38755 1.06250 0.92087 1.24855 0.98703 0.94681 0.95311 1.69863 1.35181 1.37835 1.09402 0.86450 0.84803 0.78560 0.77369 1.20508 1.21011 1.19826 1.45745 1.11782 1.57736 1.18295 1.17735 0.87259 0.89718 0.91305 1.20927 0.93854 1.07113 0.99605 1.19659 0.94257 0.95232 0.94963 1.20772 0.97990 1.01877 0.96291 1.20462 1.00016 1.07503 0.93687 1.20580 0.91401 0.97364 0.98673 1.20258 0.94111 1.13523 0.89482 1.98292 1.63882 1.97899 1.46287 0.93349 0.93376 0.95114 0.88122 0.94616 0.92535 0.77112 0.84032 0.91331 0.91889 0.91517 0.86634 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.22 37.16 0.31 -2.68 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.46 2.20 -69.08 -0.15 6.31 16 4 H 0.04 1.07 6.49 -51.93 -0.34 0.73 16 5 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -23.76 11.29 55.43 0.63 -23.14 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.71 -15.12 5.13 -53.25 -0.27 -15.39 16 14 C 0.25 4.87 5.49 -83.73 -0.46 4.41 16 15 C -0.19 -3.50 6.37 -39.39 -0.25 -3.75 16 16 C -0.04 -0.62 5.88 -104.65 -0.62 -1.24 16 17 C -0.11 -1.39 10.01 36.01 0.36 -1.03 16 18 C -0.20 -2.85 9.69 -39.55 -0.38 -3.23 16 19 C -0.06 -0.93 9.82 -39.58 -0.39 -1.32 16 20 C -0.14 -2.48 6.34 -39.31 -0.25 -2.73 16 21 Cl -0.09 -1.51 27.60 -51.86 -1.43 -2.94 16 22 H 0.05 0.94 5.39 -51.93 -0.28 0.66 16 23 H 0.05 0.92 6.35 -51.93 -0.33 0.59 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.39 8.22 7.21 -40.82 -0.29 7.92 16 29 H 0.14 2.74 4.01 -52.49 -0.21 2.53 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 286.53 15.07 4.32 4.32 Total: -1.00 -26.07 286.53 -8.41 -34.48 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.25 Total: 8.14 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -2.37 Total: -20.95 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.35 Total: -38.53 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -1.43 Total: -2.94 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.07 -8.41 -34.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232243991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.334 kcal (2) G-P(sol) polarization free energy of solvation -26.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds