Wall clock time and date at job start Mon Mar 30 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.50699 * 109.47053 * 184.99965 * 3 2 1 6 6 H 1.07997 * 120.00044 * 239.99782 * 5 3 2 7 7 C 1.37874 * 119.99795 * 60.00183 * 5 3 2 8 8 N 1.31514 * 120.00136 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99956 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47276 * 90.00176 * 9 7 5 11 11 H 1.48508 * 109.47437 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47553 * 330.00304 * 9 7 5 13 13 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 14 14 C 1.39749 * 120.00376 * 274.99552 * 13 3 2 15 15 C 1.38890 * 120.07601 * 0.02562 * 14 13 3 16 16 C 1.38116 * 119.93695 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.95198 * 179.97438 * 16 15 14 18 18 C 1.38291 * 120.09562 * 0.02590 * 16 15 14 19 19 C 1.38271 * 120.15491 * 359.97336 * 18 16 15 20 20 C 1.38208 * 120.06483 * 359.72091 * 19 18 16 21 21 Cl 1.73596 * 120.05202 * 180.29619 * 20 19 18 22 22 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 26 26 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 27 27 H 0.97009 * 119.99937 * 179.97438 * 8 7 5 28 28 H 0.96999 * 119.99886 * 95.00381 * 13 3 2 29 29 H 1.08001 * 120.02574 * 359.97291 * 15 14 13 30 30 H 1.08996 * 109.46878 * 90.00058 * 17 16 15 31 31 H 1.08996 * 109.47141 * 210.00715 * 17 16 15 32 32 H 1.09006 * 109.47110 * 330.00471 * 17 16 15 33 33 H 1.08000 * 119.92327 * 179.97438 * 18 16 15 34 34 H 1.08003 * 119.96377 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8813 -1.3818 10 1 6.5548 -0.3502 -0.7603 11 1 6.3829 0.9225 -2.8174 12 1 6.5569 2.0737 -0.6902 13 7 1.6524 2.0974 1.2518 14 6 0.3902 2.6853 1.3713 15 6 -0.4983 2.6492 0.3044 16 6 -1.7451 3.2307 0.4258 17 6 -2.7092 3.1922 -0.7318 18 6 -2.1098 3.8490 1.6078 19 6 -1.2283 3.8873 2.6724 20 6 0.0187 3.3020 2.5602 21 17 1.1222 3.3434 3.8997 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8292 -0.0602 -2.9504 28 1 2.2719 2.1231 1.9978 29 1 -0.2143 2.1669 -0.6193 30 1 -3.3226 2.2937 -0.6641 31 1 -3.3504 4.0731 -0.7002 32 1 -2.1520 3.1819 -1.6686 33 1 -3.0854 4.3032 1.6995 34 1 -1.5165 4.3707 3.5942 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232243991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:01 Heat of formation + Delta-G solvation = -7.045254 kcal Electronic energy + Delta-G solvation = -16730.171388 eV Core-core repulsion = 14073.575893 eV Total energy + Delta-G solvation = -2656.595496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67893 -37.76405 -37.28588 -34.77661 -33.50156 -32.30492 -30.69353 -28.16381 -27.38927 -24.91237 -23.61443 -22.08502 -21.12144 -18.92962 -17.80774 -17.20062 -16.82623 -16.17731 -15.61059 -15.21997 -15.02109 -14.53137 -14.20915 -14.10387 -13.71288 -13.54332 -13.17742 -13.13630 -12.84769 -12.71936 -12.45266 -12.21612 -12.08445 -12.03113 -11.92603 -11.69520 -11.39569 -11.05058 -10.79558 -10.40524 -9.38867 -8.21314 -8.06263 -6.34225 0.42787 0.77966 1.39972 1.40154 1.41530 1.50963 2.35678 2.88219 2.92126 3.09956 3.96818 4.11104 4.42105 4.49933 4.53702 4.58371 4.70253 4.75311 4.87741 4.93550 5.02030 5.06244 5.26576 5.30132 5.37000 5.40167 5.46240 5.57707 5.64734 5.84423 5.85752 6.10338 6.14946 6.50197 6.81063 7.11255 7.37052 8.84906 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.022124 B = 0.007211 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.281842 B = 3881.844845 C = 4709.318575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.284 3.716 4 H 0.014 0.986 5 C -0.552 4.552 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.907 5.907 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.726 5.726 14 C 0.225 3.775 15 C -0.209 4.209 16 C -0.040 4.040 17 C -0.112 4.112 18 C -0.182 4.182 19 C -0.060 4.060 20 C -0.151 4.151 21 Cl -0.088 7.088 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.266 0.734 28 H 0.391 0.609 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.153 0.847 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.694 4.946 5.799 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C 0.180 3.820 4 H 0.032 0.968 5 C -0.590 4.590 6 H 0.072 0.928 7 C -0.177 4.177 8 N -0.545 5.545 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.116 3.884 15 C -0.232 4.232 16 C -0.041 4.041 17 C -0.168 4.168 18 C -0.202 4.202 19 C -0.079 4.079 20 C -0.183 4.183 21 Cl -0.059 7.059 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.226 0.774 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.171 0.829 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.491 4.743 5.528 12.772 hybrid contribution 1.750 -0.273 0.182 1.781 sum -8.741 4.470 5.710 11.357 Atomic orbital electron populations 1.22038 0.96397 1.00233 1.00717 1.21854 0.94495 0.99329 1.00760 1.18410 0.93295 0.89037 0.81216 0.96816 1.21536 0.92243 1.38913 1.06346 0.92760 1.25580 1.02684 0.94354 0.95034 1.69973 1.36645 1.38203 1.09701 0.85520 0.79998 0.78508 0.77379 1.19988 1.20510 1.19753 1.45420 1.12955 1.59407 1.17201 1.17972 0.86763 0.91022 0.92677 1.20920 0.95213 1.08365 0.98746 1.20057 0.93563 0.93951 0.96556 1.20843 0.97627 1.03766 0.94586 1.20929 1.01140 1.05657 0.92498 1.20978 0.90360 0.96487 1.00108 1.20483 0.95125 1.13576 0.89115 1.98289 1.64008 1.97888 1.45760 0.93053 0.93177 0.93615 0.90739 0.95606 0.92441 0.77388 0.86014 0.89958 0.89273 0.92151 0.82891 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.22 71.98 0.59 -4.82 16 2 C -0.13 -5.92 5.45 30.60 0.17 -5.75 16 3 C 0.28 14.07 2.20 44.25 0.10 14.16 16 4 H 0.01 0.76 6.49 -2.39 -0.02 0.75 16 5 C -0.55 -29.81 8.73 25.60 0.22 -29.59 16 6 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 7 C 0.02 1.29 5.29 84.65 0.45 1.74 16 8 N -0.91 -49.93 11.29 21.45 0.24 -49.69 16 9 Si 0.96 42.61 29.54 68.60 2.03 44.63 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.73 -31.66 5.13 -322.39 -1.65 -33.32 16 14 C 0.22 8.70 5.49 38.22 0.21 8.91 16 15 C -0.21 -7.60 6.37 22.40 0.14 -7.46 16 16 C -0.04 -1.16 5.88 -19.88 -0.12 -1.27 16 17 C -0.11 -2.43 10.01 71.24 0.71 -1.71 16 18 C -0.18 -4.59 9.69 22.29 0.22 -4.37 16 19 C -0.06 -1.66 9.82 22.27 0.22 -1.44 16 20 C -0.15 -5.12 6.34 22.44 0.14 -4.98 16 21 Cl -0.09 -2.81 27.60 -2.72 -0.08 -2.88 16 22 H 0.05 2.00 5.39 -2.39 -0.01 1.98 16 23 H 0.05 1.94 6.35 -2.38 -0.02 1.92 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 28 H 0.39 16.88 7.21 -92.71 -0.67 16.21 16 29 H 0.12 4.87 4.01 -2.91 -0.01 4.86 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 32 H 0.06 1.39 8.08 -2.38 -0.02 1.37 16 33 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -56.90 286.53 4.04 -52.86 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.45 Total: 24.98 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 3.05 Total: -36.58 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -1.41 Total: -83.01 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.08 Total: -2.88 kcal Total: -56.90 4.04 -52.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232243991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.819 kcal (2) G-P(sol) polarization free energy of solvation -56.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds