Wall clock time and date at job start Mon Mar 30 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38295 * 119.92410 * 2 1 4 4 C 1.38115 * 120.09686 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.03203 * 179.97438 * 4 3 2 6 6 C 1.38877 * 119.93785 * 359.97013 * 4 3 2 7 7 N 1.39752 * 120.07969 * 180.02562 * 6 4 3 8 8 C 1.46905 * 110.99826 * 120.00378 * 7 6 4 9 9 C 1.52993 * 109.47039 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47393 * 180.02562 * 9 8 7 11 11 H 1.08010 * 119.99765 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00736 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99548 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00627 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47183 * 59.99833 * 14 12 10 16 16 H 1.48504 * 109.47670 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47006 * 300.00098 * 14 12 10 18 18 C 1.38997 * 119.84523 * 0.28367 * 6 4 3 19 19 Cl 1.73598 * 120.04644 * 179.69894 * 18 6 4 20 20 C 1.38207 * 119.89916 * 359.46623 * 18 6 4 21 21 H 1.09003 * 109.47450 * 89.99734 * 1 2 3 22 22 H 1.09002 * 109.47325 * 210.00213 * 1 2 3 23 23 H 1.09001 * 109.46891 * 329.99932 * 1 2 3 24 24 H 1.08004 * 119.94937 * 359.97438 * 3 2 1 25 25 H 1.08998 * 109.47108 * 270.01793 * 5 4 3 26 26 H 1.09005 * 109.47569 * 30.01970 * 5 4 3 27 27 H 1.09000 * 109.47393 * 150.01521 * 5 4 3 28 28 H 1.00901 * 111.00196 * 243.95614 * 7 6 4 29 29 H 1.09001 * 109.46798 * 300.00462 * 8 7 6 30 30 H 1.08998 * 109.46961 * 60.00178 * 8 7 6 31 31 H 1.09001 * 109.47393 * 299.99719 * 9 8 7 32 32 H 1.08998 * 109.47408 * 60.00073 * 9 8 7 33 33 H 0.97002 * 119.99722 * 180.02562 * 13 12 10 34 34 H 1.08000 * 119.96510 * 180.27397 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5780 1.2028 -0.0005 5 6 4.3282 2.5096 -0.0011 6 6 4.2747 0.0014 -0.0004 7 7 5.6722 0.0021 -0.0004 8 6 6.1990 -0.6833 1.1873 9 6 7.7284 -0.6615 1.1523 10 6 8.2688 -1.3652 2.3704 11 1 7.5893 -1.7856 3.0971 12 6 9.6306 -1.4725 2.5572 13 7 10.4581 -0.9610 1.6720 14 14 10.3005 -2.3441 4.0674 15 1 9.8250 -3.7508 4.0787 16 1 11.7850 -2.3231 4.0335 17 1 9.8241 -1.6507 5.2912 18 6 3.5788 -1.2018 -0.0058 19 17 4.4444 -2.7066 -0.0136 20 6 2.1967 -1.1984 0.0000 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6548 2.1327 -0.0004 25 1 4.5085 2.8247 -1.0289 26 1 3.7377 3.2680 0.5131 27 1 5.2813 2.3817 0.5121 28 1 6.0341 -0.4113 -0.8467 29 1 5.8491 -0.1744 2.0855 30 1 5.8501 -1.7159 1.1955 31 1 8.0786 -1.1702 0.2541 32 1 8.0770 0.3712 1.1443 33 1 11.4162 -1.0368 1.8033 34 1 1.6550 -2.1327 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258638885.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:21 Heat of formation + Delta-G solvation = -15.126037 kcal Electronic energy + Delta-G solvation = -16093.463154 eV Core-core repulsion = 13436.517249 eV Total energy + Delta-G solvation = -2656.945905 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93005 -37.77032 -37.25021 -35.21733 -33.83315 -32.44746 -30.72308 -28.08525 -27.12782 -25.50312 -23.31099 -22.44450 -21.38236 -18.65607 -17.88498 -17.22673 -16.62637 -16.35963 -16.05932 -15.28606 -14.88803 -14.60032 -14.30844 -14.11961 -13.89100 -13.57495 -13.38449 -13.36197 -13.04276 -12.82378 -12.55211 -12.34728 -12.32136 -12.10054 -11.94073 -11.66065 -11.39532 -11.33518 -10.56723 -9.64405 -9.45792 -9.36665 -8.20612 -6.31861 0.12739 0.26577 1.10433 1.38884 1.42183 1.50143 2.39568 2.55809 3.12656 3.20351 3.78095 3.89755 4.22467 4.28794 4.42002 4.47808 4.61497 4.67757 4.76735 4.88532 4.90869 4.93891 5.05601 5.11673 5.21602 5.40297 5.42894 5.51289 5.57680 5.64363 5.74309 5.88763 6.07516 6.27883 6.49404 6.83546 7.36934 8.91350 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030392 B = 0.005203 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.064701 B = 5379.868852 C = 5858.128072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.077 4.077 3 C -0.111 4.111 4 C -0.061 4.061 5 C -0.102 4.102 6 C 0.074 3.926 7 N -0.644 5.644 8 C 0.071 3.929 9 C 0.039 3.961 10 C -0.543 4.543 11 H 0.056 0.944 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.964 3.036 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.267 1.267 18 C -0.081 4.081 19 Cl -0.074 7.074 20 C -0.120 4.120 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.160 0.840 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.347 0.653 29 H 0.046 0.954 30 H 0.050 0.950 31 H -0.008 1.008 32 H -0.006 1.006 33 H 0.264 0.736 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.929 3.114 -4.572 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.130 4.130 4 C -0.062 4.062 5 C -0.159 4.159 6 C -0.022 4.022 7 N -0.275 5.275 8 C -0.056 4.056 9 C 0.002 3.998 10 C -0.581 4.581 11 H 0.074 0.926 12 C -0.194 4.194 13 N -0.570 5.570 14 Si 0.789 3.211 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.110 4.110 19 Cl -0.045 7.045 20 C -0.139 4.139 21 H 0.104 0.896 22 H 0.093 0.907 23 H 0.103 0.897 24 H 0.178 0.822 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.170 0.830 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.010 0.990 32 H 0.013 0.987 33 H 0.073 0.927 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.582 3.622 -4.341 21.345 hybrid contribution 1.014 -1.659 0.350 1.976 sum -19.569 1.963 -3.992 20.068 Atomic orbital electron populations 1.20842 0.87830 1.04146 1.03640 1.20222 0.98063 0.91501 0.97926 1.21316 0.92289 0.99287 1.00068 1.20074 0.94029 0.94261 0.97857 1.20647 0.99990 0.92345 1.02905 1.18840 0.89516 0.91517 1.02336 1.58058 1.03723 1.59843 1.05901 1.22177 0.96026 0.96940 0.90493 1.18841 0.90396 0.95222 0.95364 1.21504 0.92227 1.36582 1.07828 0.92563 1.25923 0.97363 0.96306 0.99804 1.70100 1.03150 1.46575 1.37169 0.85516 0.77129 0.79153 0.79345 1.19308 1.20548 1.19158 1.22172 0.94224 0.86737 1.07877 1.98359 1.76769 1.32690 1.96638 1.21066 0.90753 1.00065 1.02042 0.89626 0.90707 0.89700 0.82244 0.90374 0.89754 0.92496 0.82964 0.93566 0.93195 0.99006 0.98709 0.92699 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.23 0.71 -0.57 16 2 C -0.08 -1.53 5.88 -19.84 -0.12 -1.64 16 3 C -0.11 -2.31 9.35 22.25 0.21 -2.10 16 4 C -0.06 -1.66 5.90 -19.74 -0.12 -1.78 16 5 C -0.10 -2.54 9.77 71.23 0.70 -1.84 16 6 C 0.07 2.46 5.57 38.21 0.21 2.67 16 7 N -0.64 -24.81 5.18 -338.43 -1.75 -26.56 16 8 C 0.07 3.20 5.17 86.30 0.45 3.64 16 9 C 0.04 2.17 5.23 29.85 0.16 2.33 16 10 C -0.54 -32.02 9.11 25.60 0.23 -31.78 16 11 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 12 C 0.00 0.25 5.46 84.65 0.46 0.71 16 13 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 14 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C -0.08 -2.51 6.14 22.44 0.14 -2.37 16 19 Cl -0.07 -2.44 25.38 -2.72 -0.07 -2.51 16 20 C -0.12 -2.93 9.48 22.27 0.21 -2.71 16 21 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 23 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 24 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.08 1.61 8.09 -2.38 -0.02 1.59 16 27 H 0.06 1.77 7.46 -2.39 -0.02 1.75 16 28 H 0.35 13.32 8.73 -89.69 -0.78 12.54 16 29 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 30 H 0.05 2.23 4.73 -2.39 -0.01 2.22 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -67.17 299.81 4.05 -63.12 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.31 Total: 11.55 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 3.24 Total: -35.46 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.47 Total: -83.99 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.07 Total: -2.51 kcal Total: -67.17 4.05 -63.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258638885.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.994 kcal (2) G-P(sol) polarization free energy of solvation -67.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds