Wall clock time and date at job start Mon Mar 30 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38651 * 120.79753 * 2 1 4 4 C 1.38184 * 119.17572 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.60129 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47600 * 204.99930 * 5 4 3 7 7 C 1.50700 * 109.47276 * 324.99987 * 5 4 3 8 8 H 1.08008 * 119.99874 * 84.67451 * 7 5 4 9 9 C 1.37879 * 120.00256 * 264.67139 * 7 5 4 10 10 N 1.31516 * 119.99708 * 5.89741 * 9 7 5 11 11 Si 1.86797 * 120.00194 * 185.89634 * 9 7 5 12 12 H 1.48499 * 109.46965 * 89.99960 * 11 9 7 13 13 H 1.48499 * 109.47225 * 210.00278 * 11 9 7 14 14 H 1.48499 * 109.47129 * 330.00053 * 11 9 7 15 15 C 1.53003 * 109.46966 * 85.00057 * 5 4 3 16 16 C 1.52997 * 109.47117 * 60.57753 * 15 5 4 17 17 C 1.52999 * 109.47039 * 180.58175 * 15 5 4 18 18 N 1.31875 * 120.79818 * 0.02562 * 4 3 2 19 19 C 1.31852 * 121.73512 * 359.68298 * 18 4 3 20 20 C 1.38347 * 120.74431 * 0.57837 * 19 18 4 21 21 Cl 1.73595 * 120.43155 * 179.72883 * 20 19 18 22 22 H 1.09002 * 109.46746 * 270.02282 * 1 2 3 23 23 H 1.08998 * 109.47040 * 30.01730 * 1 2 3 24 24 H 1.08992 * 109.47696 * 150.02154 * 1 2 3 25 25 H 1.08001 * 120.41015 * 359.95472 * 3 2 1 26 26 H 0.96997 * 119.99474 * 179.97438 * 10 9 7 27 27 H 1.09008 * 109.47110 * 300.57849 * 15 5 4 28 28 H 1.08996 * 109.47147 * 60.00441 * 16 15 5 29 29 H 1.09002 * 109.47201 * 179.97438 * 16 15 5 30 30 H 1.08994 * 109.47128 * 299.99925 * 16 15 5 31 31 H 1.08996 * 109.47432 * 58.01497 * 17 15 5 32 32 H 1.09007 * 109.47218 * 178.01801 * 17 15 5 33 33 H 1.08998 * 109.46954 * 298.01479 * 17 15 5 34 34 H 1.08001 * 119.62778 * 180.29732 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1910 0.0000 4 6 3.5982 1.1519 0.0005 5 6 4.3794 2.4406 0.0000 6 1 5.3644 2.2683 -0.4338 7 6 3.6449 3.4730 -0.8160 8 1 2.8618 4.0626 -0.3624 9 6 3.9724 3.6648 -2.1415 10 7 4.8428 2.8704 -2.7253 11 14 3.1798 5.0530 -3.1079 12 1 4.0083 6.2790 -2.9832 13 1 3.0800 4.6663 -4.5382 14 1 1.8208 5.3172 -2.5707 15 6 4.5357 2.9428 1.4367 16 6 5.2941 1.9010 2.2615 17 6 5.3163 4.2587 1.4349 18 7 4.2411 0.0004 0.0005 19 6 3.6001 -1.1518 0.0062 20 6 2.2172 -1.1918 0.0005 21 17 1.3816 -2.7134 0.0010 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3634 -0.8901 -0.5134 25 1 1.6968 2.1375 -0.0007 26 1 5.0730 3.0052 -3.6579 27 1 3.5505 3.1054 1.8740 28 1 6.2792 1.7385 1.8243 29 1 5.4059 2.2590 3.2850 30 1 4.7380 0.9636 2.2628 31 1 4.7939 4.9903 0.8185 32 1 5.3973 4.6346 2.4549 33 1 6.3140 4.0887 1.0301 34 1 4.1609 -2.0747 0.0109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:04 Heat of formation + Delta-G solvation = -2.310908 kcal Electronic energy + Delta-G solvation = -16791.984000 eV Core-core repulsion = 14135.593801 eV Total energy + Delta-G solvation = -2656.390199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68877 -36.45952 -35.61589 -33.25006 -32.43342 -30.50818 -27.55624 -26.91634 -26.14470 -23.72685 -22.38494 -20.67592 -18.79968 -16.77974 -16.02482 -15.80001 -14.84819 -14.63015 -14.10097 -13.67267 -13.21658 -13.00091 -12.42452 -12.37196 -12.32937 -11.91262 -11.72214 -11.41576 -11.37263 -11.21168 -10.96079 -10.84486 -10.68847 -10.33836 -10.17788 -9.92184 -9.32586 -9.12410 -8.81808 -8.75883 -8.48189 -7.87364 -6.14055 -4.20364 1.75943 1.89893 2.52979 3.23407 3.31610 3.32340 4.31785 4.50186 5.04113 5.12280 5.20736 5.40424 5.67537 5.81170 5.84275 5.90474 5.97755 6.01843 6.18884 6.36623 6.39522 6.46759 6.62976 6.64377 6.67549 6.76748 6.93285 7.07598 7.17029 7.27551 7.55250 7.67567 7.81492 8.20288 8.85721 8.90755 9.44849 10.93926 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.007863 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.538902 B = 3560.124018 C = 4288.978384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 C -0.143 4.143 4 C 0.196 3.804 5 C 0.080 3.920 6 H 0.079 0.921 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.877 5.877 11 Si 0.889 3.111 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.272 1.272 15 C -0.079 4.079 16 C -0.142 4.142 17 C -0.127 4.127 18 N -0.478 5.478 19 C 0.108 3.892 20 C -0.121 4.121 21 Cl -0.087 7.087 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.142 0.858 26 H 0.263 0.737 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.177 -4.678 6.157 9.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.058 4.058 3 C -0.163 4.163 4 C 0.060 3.940 5 C 0.061 3.939 6 H 0.097 0.903 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.134 4.134 10 N -0.513 5.513 11 Si 0.716 3.284 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.099 4.099 16 C -0.200 4.200 17 C -0.185 4.185 18 N -0.188 5.188 19 C -0.050 4.050 20 C -0.150 4.150 21 Cl -0.059 7.059 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.160 0.840 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.240 -4.847 5.965 8.778 hybrid contribution -1.434 0.380 -0.833 1.701 sum -5.674 -4.466 5.132 8.859 Atomic orbital electron populations 1.20784 0.90606 1.03182 1.02422 1.20169 0.96610 0.91752 0.97309 1.21971 0.95619 0.97351 1.01339 1.22707 0.91561 0.94396 0.85374 1.18097 0.97862 0.86491 0.91478 0.90325 1.20925 1.20280 1.19076 0.95040 0.92157 1.25027 0.94828 0.95792 0.97802 1.69977 1.32591 1.36496 1.12187 0.86640 0.79869 0.82554 0.79292 1.20378 1.21300 1.19721 1.21093 0.97627 0.94623 0.96529 1.21866 1.00811 0.99034 0.98244 1.21641 1.00133 0.97746 0.98958 1.67893 1.39987 0.97644 1.13275 1.22645 0.89078 0.97320 0.95996 1.21787 0.93790 0.86198 1.13214 1.98292 1.78889 1.31344 1.97391 0.90977 0.90976 0.91210 0.83999 0.92675 0.93079 0.92921 0.94542 0.93557 0.91487 0.95125 0.93558 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.69 36.01 0.35 -1.26 16 2 C -0.05 -0.91 5.92 -104.28 -0.62 -1.52 16 3 C -0.14 -2.92 8.88 -39.45 -0.35 -3.27 16 4 C 0.20 4.41 4.81 -82.59 -0.40 4.01 16 5 C 0.08 1.88 1.77 -92.92 -0.16 1.71 16 6 H 0.08 2.13 7.38 -51.93 -0.38 1.74 16 7 C -0.52 -12.82 5.56 -34.44 -0.19 -13.01 16 8 H 0.06 1.46 7.71 -52.48 -0.40 1.06 16 9 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 10 N -0.88 -24.52 12.85 55.43 0.71 -23.81 16 11 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C -0.08 -1.59 2.49 -90.62 -0.23 -1.81 16 16 C -0.14 -2.60 8.88 37.16 0.33 -2.27 16 17 C -0.13 -2.40 8.98 37.16 0.33 -2.06 16 18 N -0.48 -10.51 9.56 -9.45 -0.09 -10.60 16 19 C 0.11 2.05 10.99 -17.50 -0.19 1.85 16 20 C -0.12 -2.15 6.34 -39.36 -0.25 -2.40 16 21 Cl -0.09 -1.29 27.48 -51.86 -1.42 -2.72 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 24 H 0.07 0.93 7.03 -51.93 -0.36 0.57 16 25 H 0.14 2.85 7.12 -52.49 -0.37 2.48 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.87 6.76 -51.93 -0.35 0.52 16 31 H 0.07 1.33 7.13 -51.93 -0.37 0.96 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 296.96 15.07 4.48 4.48 Total: -1.00 -27.06 296.96 -7.59 -34.65 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.76 Total: 1.10 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.47 Total: -18.31 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.62 Total: -34.41 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.42 Total: -2.72 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.06 -7.59 -34.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.338 kcal (2) G-P(sol) polarization free energy of solvation -27.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds