Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38651 * 120.79753 * 2 1 4 4 C 1.38184 * 119.17572 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.60129 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47600 * 204.99930 * 5 4 3 7 7 C 1.50700 * 109.47276 * 324.99987 * 5 4 3 8 8 H 1.08008 * 119.99874 * 84.67451 * 7 5 4 9 9 C 1.37879 * 120.00256 * 264.67139 * 7 5 4 10 10 N 1.31516 * 119.99708 * 5.89741 * 9 7 5 11 11 Si 1.86797 * 120.00194 * 185.89634 * 9 7 5 12 12 H 1.48499 * 109.46965 * 89.99960 * 11 9 7 13 13 H 1.48499 * 109.47225 * 210.00278 * 11 9 7 14 14 H 1.48499 * 109.47129 * 330.00053 * 11 9 7 15 15 C 1.53003 * 109.46966 * 85.00057 * 5 4 3 16 16 C 1.52997 * 109.47117 * 60.57753 * 15 5 4 17 17 C 1.52999 * 109.47039 * 180.58175 * 15 5 4 18 18 N 1.31875 * 120.79818 * 0.02562 * 4 3 2 19 19 C 1.31852 * 121.73512 * 359.68298 * 18 4 3 20 20 C 1.38347 * 120.74431 * 0.57837 * 19 18 4 21 21 Cl 1.73595 * 120.43155 * 179.72883 * 20 19 18 22 22 H 1.09002 * 109.46746 * 270.02282 * 1 2 3 23 23 H 1.08998 * 109.47040 * 30.01730 * 1 2 3 24 24 H 1.08992 * 109.47696 * 150.02154 * 1 2 3 25 25 H 1.08001 * 120.41015 * 359.95472 * 3 2 1 26 26 H 0.96997 * 119.99474 * 179.97438 * 10 9 7 27 27 H 1.09008 * 109.47110 * 300.57849 * 15 5 4 28 28 H 1.08996 * 109.47147 * 60.00441 * 16 15 5 29 29 H 1.09002 * 109.47201 * 179.97438 * 16 15 5 30 30 H 1.08994 * 109.47128 * 299.99925 * 16 15 5 31 31 H 1.08996 * 109.47432 * 58.01497 * 17 15 5 32 32 H 1.09007 * 109.47218 * 178.01801 * 17 15 5 33 33 H 1.08998 * 109.46954 * 298.01479 * 17 15 5 34 34 H 1.08001 * 119.62778 * 180.29732 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1910 0.0000 4 6 3.5982 1.1519 0.0005 5 6 4.3794 2.4406 0.0000 6 1 5.3644 2.2683 -0.4338 7 6 3.6449 3.4730 -0.8160 8 1 2.8618 4.0626 -0.3624 9 6 3.9724 3.6648 -2.1415 10 7 4.8428 2.8704 -2.7253 11 14 3.1798 5.0530 -3.1079 12 1 4.0083 6.2790 -2.9832 13 1 3.0800 4.6663 -4.5382 14 1 1.8208 5.3172 -2.5707 15 6 4.5357 2.9428 1.4367 16 6 5.2941 1.9010 2.2615 17 6 5.3163 4.2587 1.4349 18 7 4.2411 0.0004 0.0005 19 6 3.6001 -1.1518 0.0062 20 6 2.2172 -1.1918 0.0005 21 17 1.3816 -2.7134 0.0010 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3634 -0.8901 -0.5134 25 1 1.6968 2.1375 -0.0007 26 1 5.0730 3.0052 -3.6579 27 1 3.5505 3.1054 1.8740 28 1 6.2792 1.7385 1.8243 29 1 5.4059 2.2590 3.2850 30 1 4.7380 0.9636 2.2628 31 1 4.7939 4.9903 0.8185 32 1 5.3973 4.6346 2.4549 33 1 6.3140 4.0887 1.0301 34 1 4.1609 -2.0747 0.0109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -15.704262 kcal Electronic energy + Delta-G solvation = -16792.564780 eV Core-core repulsion = 14135.593801 eV Total energy + Delta-G solvation = -2656.970978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22607 -37.92513 -37.12433 -34.68794 -34.30793 -32.09717 -29.11780 -28.42392 -27.68518 -25.51717 -23.93820 -22.17944 -20.45588 -18.62578 -17.47435 -17.40254 -16.60404 -16.24361 -15.58793 -15.24206 -14.70208 -14.63139 -13.89050 -13.74532 -13.69019 -13.46010 -13.30179 -12.92054 -12.83208 -12.80745 -12.65641 -12.38306 -12.12643 -11.98735 -11.83923 -11.52035 -11.02495 -10.96268 -10.64782 -10.25640 -10.15196 -9.41357 -8.11885 -6.22113 0.24275 0.40374 1.14954 1.42762 1.44770 1.52936 2.43056 2.92837 3.18432 3.68265 3.80499 3.93725 4.22829 4.31693 4.43804 4.48946 4.59348 4.74590 4.81637 4.89691 4.95245 5.04429 5.09349 5.14733 5.21143 5.22849 5.41103 5.46770 5.55093 5.67427 5.75017 5.91984 5.95257 6.30431 6.93859 7.29527 7.45674 8.96565 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.007863 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.538902 B = 3560.124018 C = 4288.978384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.045 4.045 3 C -0.159 4.159 4 C 0.172 3.828 5 C 0.082 3.918 6 H 0.032 0.968 7 C -0.507 4.507 8 H 0.066 0.934 9 C 0.018 3.982 10 N -0.920 5.920 11 Si 0.947 3.053 12 H -0.275 1.275 13 H -0.294 1.294 14 H -0.259 1.259 15 C -0.079 4.079 16 C -0.132 4.132 17 C -0.123 4.123 18 N -0.508 5.508 19 C 0.100 3.900 20 C -0.120 4.120 21 Cl -0.054 7.054 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.141 0.859 26 H 0.259 0.741 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.094 -5.061 7.283 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.053 4.053 3 C -0.180 4.180 4 C 0.036 3.964 5 C 0.062 3.938 6 H 0.051 0.949 7 C -0.546 4.546 8 H 0.084 0.916 9 C -0.182 4.182 10 N -0.558 5.558 11 Si 0.773 3.227 12 H -0.200 1.200 13 H -0.221 1.221 14 H -0.183 1.183 15 C -0.098 4.098 16 C -0.189 4.189 17 C -0.180 4.180 18 N -0.218 5.218 19 C -0.058 4.058 20 C -0.149 4.149 21 Cl -0.026 7.026 22 H 0.113 0.887 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.159 0.841 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.175 -5.218 7.111 10.767 hybrid contribution -0.881 0.349 -1.111 1.460 sum -7.056 -4.869 6.000 10.464 Atomic orbital electron populations 1.20881 0.87616 1.04118 1.04121 1.20551 0.98674 0.90866 0.95256 1.21961 0.94950 0.98449 1.02592 1.22454 0.92397 0.94114 0.87389 1.17955 0.95439 0.87337 0.93037 0.94948 1.21209 1.19577 1.18777 0.94994 0.91599 1.25747 0.95539 0.97886 0.99006 1.70135 1.34877 1.38657 1.12138 0.85718 0.79592 0.79920 0.77489 1.20021 1.22056 1.18332 1.21070 0.98444 0.95497 0.94776 1.21745 0.99623 0.98164 0.99384 1.21587 0.98970 0.96848 1.00582 1.67795 1.41168 0.98431 1.14436 1.23038 0.90169 0.97175 0.95451 1.21851 0.93668 0.87699 1.11713 1.98303 1.78068 1.29029 1.97167 0.88718 0.90217 0.90102 0.84132 0.93250 0.92382 0.94083 0.91653 0.94467 0.92914 0.91873 0.94748 0.81237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 9.69 71.24 0.69 -2.12 16 2 C -0.05 -1.55 5.92 -19.65 -0.12 -1.67 16 3 C -0.16 -6.47 8.88 22.36 0.20 -6.27 16 4 C 0.17 7.87 4.81 42.54 0.20 8.07 16 5 C 0.08 3.95 1.77 -12.29 -0.02 3.93 16 6 H 0.03 1.85 7.38 -2.39 -0.02 1.83 16 7 C -0.51 -25.63 5.56 25.60 0.14 -25.49 16 8 H 0.07 3.18 7.71 -2.91 -0.02 3.16 16 9 C 0.02 0.95 5.45 84.65 0.46 1.41 16 10 N -0.92 -53.43 12.85 21.45 0.28 -53.16 16 11 Si 0.95 41.96 29.54 68.60 2.03 43.98 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 15 C -0.08 -3.14 2.49 -10.79 -0.03 -3.16 16 16 C -0.13 -4.76 8.88 71.98 0.64 -4.12 16 17 C -0.12 -4.55 8.98 71.98 0.65 -3.91 16 18 N -0.51 -22.67 9.56 -183.80 -1.76 -24.43 16 19 C 0.10 3.72 10.99 84.72 0.93 4.65 16 20 C -0.12 -4.05 6.34 22.41 0.14 -3.91 16 21 Cl -0.05 -1.45 27.48 -2.72 -0.07 -1.52 16 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 24 H 0.08 1.87 7.03 -2.39 -0.02 1.86 16 25 H 0.14 5.59 7.12 -2.91 -0.02 5.57 16 26 H 0.26 14.49 8.31 -92.71 -0.77 13.71 16 27 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.39 6.76 -2.39 -0.02 1.37 16 31 H 0.05 2.08 7.13 -2.39 -0.02 2.06 16 32 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.17 5.29 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -59.46 296.96 5.44 -54.02 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 1.08 Total: 13.69 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 3.89 Total: -32.59 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.48 Total: -77.59 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.52 kcal Total: -59.46 5.44 -54.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.318 kcal (2) G-P(sol) polarization free energy of solvation -59.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds