Wall clock time and date at job start Mon Mar 30 2020 06:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38612 * 120.42588 * 2 1 4 4 C 1.38661 * 118.43839 * 179.97438 * 3 2 1 5 5 C 1.38187 * 119.19296 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.61157 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47408 * 154.99891 * 6 5 4 8 8 C 1.50701 * 109.47051 * 34.99972 * 6 5 4 9 9 H 1.08006 * 119.99711 * 267.34813 * 8 6 5 10 10 C 1.37875 * 120.00062 * 87.34555 * 8 6 5 11 11 N 1.31511 * 119.99907 * 5.68788 * 10 8 6 12 12 Si 1.86803 * 119.99977 * 185.68924 * 10 8 6 13 13 H 1.48500 * 109.47259 * 90.00197 * 12 10 8 14 14 H 1.48498 * 109.47024 * 210.00023 * 12 10 8 15 15 H 1.48502 * 109.47029 * 330.00029 * 12 10 8 16 16 C 1.53004 * 109.46804 * 275.00326 * 6 5 4 17 17 C 1.52999 * 109.46784 * 177.69145 * 16 6 5 18 18 C 1.52999 * 109.46752 * 297.68593 * 16 6 5 19 19 N 1.31872 * 120.77908 * 0.02562 * 5 4 3 20 20 C 1.31974 * 121.70821 * 359.97438 * 19 5 4 21 21 Cl 1.73609 * 119.63256 * 179.97438 * 20 19 5 22 22 H 1.09000 * 109.47512 * 269.95935 * 1 2 3 23 23 H 1.09000 * 109.46726 * 29.96419 * 1 2 3 24 24 H 1.09004 * 109.46767 * 149.95971 * 1 2 3 25 25 H 1.08001 * 120.78117 * 0.03699 * 3 2 1 26 26 H 1.08003 * 120.40498 * 180.29192 * 4 3 2 27 27 H 0.96998 * 119.99951 * 179.97438 * 11 10 8 28 28 H 1.08993 * 109.47494 * 57.69337 * 16 6 5 29 29 H 1.09002 * 109.47548 * 54.42212 * 17 16 6 30 30 H 1.08999 * 109.47423 * 174.41999 * 17 16 6 31 31 H 1.08998 * 109.47165 * 294.42068 * 17 16 6 32 32 H 1.09000 * 109.46970 * 60.00734 * 18 16 6 33 33 H 1.09002 * 109.46683 * 180.02562 * 18 16 6 34 34 H 1.08990 * 109.47389 * 300.00200 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1952 0.0000 4 6 3.5947 1.1471 0.0005 5 6 4.2265 -0.0819 0.0005 6 6 5.7322 -0.1451 0.0017 7 1 6.0558 -1.0911 0.4359 8 6 6.2823 0.9963 0.8176 9 1 6.5428 1.9275 0.3365 10 6 6.4529 0.8518 2.1781 11 7 6.2425 -0.3151 2.7469 12 14 6.9831 2.3135 3.2134 13 1 5.7814 3.0426 3.6925 14 1 7.7693 1.8354 4.3789 15 1 7.8200 3.2244 2.3918 16 6 6.2481 -0.0402 -1.4349 17 6 7.7781 -0.0465 -1.4290 18 6 5.7363 -1.2305 -2.2487 19 7 3.5274 -1.2000 -0.0005 20 6 2.2076 -1.1929 -0.0011 21 17 1.3412 -2.6973 -0.0031 22 1 -0.3634 -0.0007 1.0276 23 1 -0.3633 0.8903 -0.5133 24 1 -0.3633 -0.8897 -0.5145 25 1 1.6887 2.1417 0.0006 26 1 4.1733 2.0591 0.0053 27 1 6.3629 -0.4169 3.7040 28 1 5.8904 0.8868 -1.8827 29 1 8.1358 -0.9259 -0.8934 30 1 8.1453 -0.0718 -2.4550 31 1 8.1432 0.8536 -0.9345 32 1 4.6464 -1.2260 -2.2529 33 1 6.1043 -1.1560 -3.2720 34 1 6.0941 -2.1575 -1.8009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:01 Heat of formation + Delta-G solvation = -1.111364 kcal Electronic energy + Delta-G solvation = -16813.053228 eV Core-core repulsion = 14156.715045 eV Total energy + Delta-G solvation = -2656.338183 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68152 -36.40589 -35.65729 -32.90571 -32.45392 -30.95034 -28.24332 -26.64935 -25.42819 -23.25515 -22.67617 -21.06047 -18.92609 -16.82894 -15.84869 -15.81286 -14.69183 -14.45981 -14.21346 -13.73956 -13.23432 -12.96820 -12.72770 -12.34043 -12.22864 -11.87190 -11.60915 -11.35891 -11.21476 -11.07239 -10.96740 -10.80170 -10.59739 -10.37482 -10.22814 -9.92612 -9.35880 -9.12631 -8.96797 -8.80113 -8.45541 -7.80052 -6.13211 -4.19262 1.75041 1.93851 2.41128 3.23365 3.31825 3.32740 4.32549 4.47663 5.03929 5.19944 5.29193 5.48893 5.64664 5.80403 5.86875 5.94829 5.98616 6.05917 6.10179 6.25195 6.40546 6.50444 6.64251 6.69429 6.72731 6.78231 6.94407 7.09618 7.15560 7.25538 7.53091 7.71748 7.82150 8.19947 8.77811 8.90434 9.45680 10.94824 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.008186 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.818370 B = 3419.831342 C = 4041.808897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.158 4.158 3 C -0.082 4.082 4 C -0.146 4.146 5 C 0.203 3.797 6 C 0.082 3.918 7 H 0.077 0.923 8 C -0.516 4.516 9 H 0.062 0.938 10 C 0.070 3.930 11 N -0.875 5.875 12 Si 0.887 3.113 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.271 1.271 16 C -0.079 4.079 17 C -0.125 4.125 18 C -0.142 4.142 19 N -0.479 5.479 20 C 0.171 3.829 21 Cl -0.063 7.063 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.129 0.871 26 H 0.142 0.858 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 1.398 -6.163 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.162 4.162 3 C -0.107 4.107 4 C -0.166 4.166 5 C 0.066 3.934 6 C 0.062 3.938 7 H 0.095 0.905 8 C -0.554 4.554 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.511 5.511 12 Si 0.714 3.286 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.196 1.196 16 C -0.098 4.098 17 C -0.182 4.182 18 C -0.200 4.200 19 N -0.190 5.190 20 C 0.006 3.994 21 Cl -0.035 7.035 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.147 0.853 26 H 0.160 0.840 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.943 0.346 -5.977 9.168 hybrid contribution -0.377 1.357 0.913 1.678 sum -7.320 1.703 -5.063 9.062 Atomic orbital electron populations 1.20665 0.90689 1.02570 1.02166 1.20246 0.96942 0.92233 1.06742 1.21366 0.94500 0.96783 0.98072 1.22156 0.93621 1.00934 0.99939 1.22553 0.98851 0.85494 0.86549 1.18081 0.83243 1.00994 0.91451 0.90538 1.20928 1.43221 0.99157 0.92076 0.92019 1.25032 0.94653 0.95486 0.98262 1.69967 1.47553 1.22372 1.11204 0.86672 0.78733 0.82983 0.80189 1.20599 1.21168 1.19596 1.21068 0.95730 0.96526 0.96485 1.21615 0.95428 1.02578 0.98608 1.21863 1.00506 0.99341 0.98243 1.67005 1.05219 1.33292 1.13460 1.21426 0.90578 0.85567 1.01805 1.98326 1.74288 1.34091 1.96774 0.91479 0.91799 0.91352 0.85287 0.83986 0.92672 0.93051 0.93236 0.95151 0.91945 0.93552 0.94506 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 9.63 36.00 0.35 -1.02 16 2 C -0.16 -2.76 5.90 -104.45 -0.62 -3.38 16 3 C -0.08 -1.42 9.86 -39.29 -0.39 -1.81 16 4 C -0.15 -2.98 9.18 -39.44 -0.36 -3.34 16 5 C 0.20 4.62 4.88 -82.59 -0.40 4.22 16 6 C 0.08 1.94 1.73 -92.92 -0.16 1.77 16 7 H 0.08 2.10 7.46 -51.93 -0.39 1.72 16 8 C -0.52 -12.88 5.61 -34.44 -0.19 -13.07 16 9 H 0.06 1.49 7.72 -52.48 -0.41 1.09 16 10 C 0.07 1.84 5.45 -17.82 -0.10 1.75 16 11 N -0.88 -24.69 12.88 55.43 0.71 -23.98 16 12 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 C -0.08 -1.59 2.49 -90.62 -0.23 -1.82 16 17 C -0.12 -2.36 8.80 37.16 0.33 -2.04 16 18 C -0.14 -2.66 8.92 37.16 0.33 -2.33 16 19 N -0.48 -10.93 9.55 -6.62 -0.06 -10.99 16 20 C 0.17 3.41 7.27 -17.45 -0.13 3.28 16 21 Cl -0.06 -1.08 27.46 -51.86 -1.42 -2.51 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 24 H 0.07 0.86 6.92 -51.93 -0.36 0.50 16 25 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.14 2.79 7.19 -52.48 -0.38 2.42 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 1.22 7.30 -51.93 -0.38 0.84 16 32 H 0.05 0.90 6.81 -51.93 -0.35 0.55 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -27.77 297.18 -7.66 -35.43 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.78 Total: 0.10 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -1.57 Total: -17.78 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.65 Total: -34.97 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.42 Total: -2.51 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.77 -7.66 -35.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.322 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds