Wall clock time and date at job start Mon Mar 30 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38612 * 120.42588 * 2 1 4 4 C 1.38661 * 118.43839 * 179.97438 * 3 2 1 5 5 C 1.38187 * 119.19296 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.61157 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47408 * 154.99891 * 6 5 4 8 8 C 1.50701 * 109.47051 * 34.99972 * 6 5 4 9 9 H 1.08006 * 119.99711 * 267.34813 * 8 6 5 10 10 C 1.37875 * 120.00062 * 87.34555 * 8 6 5 11 11 N 1.31511 * 119.99907 * 5.68788 * 10 8 6 12 12 Si 1.86803 * 119.99977 * 185.68924 * 10 8 6 13 13 H 1.48500 * 109.47259 * 90.00197 * 12 10 8 14 14 H 1.48498 * 109.47024 * 210.00023 * 12 10 8 15 15 H 1.48502 * 109.47029 * 330.00029 * 12 10 8 16 16 C 1.53004 * 109.46804 * 275.00326 * 6 5 4 17 17 C 1.52999 * 109.46784 * 177.69145 * 16 6 5 18 18 C 1.52999 * 109.46752 * 297.68593 * 16 6 5 19 19 N 1.31872 * 120.77908 * 0.02562 * 5 4 3 20 20 C 1.31974 * 121.70821 * 359.97438 * 19 5 4 21 21 Cl 1.73609 * 119.63256 * 179.97438 * 20 19 5 22 22 H 1.09000 * 109.47512 * 269.95935 * 1 2 3 23 23 H 1.09000 * 109.46726 * 29.96419 * 1 2 3 24 24 H 1.09004 * 109.46767 * 149.95971 * 1 2 3 25 25 H 1.08001 * 120.78117 * 0.03699 * 3 2 1 26 26 H 1.08003 * 120.40498 * 180.29192 * 4 3 2 27 27 H 0.96998 * 119.99951 * 179.97438 * 11 10 8 28 28 H 1.08993 * 109.47494 * 57.69337 * 16 6 5 29 29 H 1.09002 * 109.47548 * 54.42212 * 17 16 6 30 30 H 1.08999 * 109.47423 * 174.41999 * 17 16 6 31 31 H 1.08998 * 109.47165 * 294.42068 * 17 16 6 32 32 H 1.09000 * 109.46970 * 60.00734 * 18 16 6 33 33 H 1.09002 * 109.46683 * 180.02562 * 18 16 6 34 34 H 1.08990 * 109.47389 * 300.00200 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1952 0.0000 4 6 3.5947 1.1471 0.0005 5 6 4.2265 -0.0819 0.0005 6 6 5.7322 -0.1451 0.0017 7 1 6.0558 -1.0911 0.4359 8 6 6.2823 0.9963 0.8176 9 1 6.5428 1.9275 0.3365 10 6 6.4529 0.8518 2.1781 11 7 6.2425 -0.3151 2.7469 12 14 6.9831 2.3135 3.2134 13 1 5.7814 3.0426 3.6925 14 1 7.7693 1.8354 4.3789 15 1 7.8200 3.2244 2.3918 16 6 6.2481 -0.0402 -1.4349 17 6 7.7781 -0.0465 -1.4290 18 6 5.7363 -1.2305 -2.2487 19 7 3.5274 -1.2000 -0.0005 20 6 2.2076 -1.1929 -0.0011 21 17 1.3412 -2.6973 -0.0031 22 1 -0.3634 -0.0007 1.0276 23 1 -0.3633 0.8903 -0.5133 24 1 -0.3633 -0.8897 -0.5145 25 1 1.6887 2.1417 0.0006 26 1 4.1733 2.0591 0.0053 27 1 6.3629 -0.4169 3.7040 28 1 5.8904 0.8868 -1.8827 29 1 8.1358 -0.9259 -0.8934 30 1 8.1453 -0.0718 -2.4550 31 1 8.1432 0.8536 -0.9345 32 1 4.6464 -1.2260 -2.2529 33 1 6.1043 -1.1560 -3.2720 34 1 6.0941 -2.1575 -1.8009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:00 Heat of formation + Delta-G solvation = -15.544519 kcal Electronic energy + Delta-G solvation = -16813.679097 eV Core-core repulsion = 14156.715045 eV Total energy + Delta-G solvation = -2656.964051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21066 -37.94990 -37.18477 -34.37130 -34.31137 -32.48178 -29.82796 -28.22082 -26.98242 -25.00008 -24.16803 -22.57133 -20.58837 -18.64684 -17.46095 -17.37601 -16.52621 -15.90983 -15.71801 -15.29095 -14.73212 -14.59607 -14.21513 -13.65431 -13.45077 -13.36123 -13.25517 -12.94744 -12.83522 -12.72563 -12.54705 -12.38735 -12.14576 -11.97549 -11.88054 -11.54149 -11.02949 -10.97349 -10.64723 -10.48712 -10.16441 -9.31771 -8.11849 -6.22223 0.23834 0.47299 0.95280 1.42213 1.44399 1.53262 2.43058 2.91661 3.17897 3.76719 3.98589 4.11464 4.24310 4.31193 4.41408 4.52005 4.58070 4.82468 4.83466 4.89353 4.94842 5.06660 5.12649 5.16173 5.25866 5.32889 5.41273 5.46541 5.53188 5.65060 5.76302 5.92282 5.96597 6.28920 6.93667 7.19857 7.45660 8.96726 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.008186 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.818370 B = 3419.831342 C = 4041.808897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.149 4.149 3 C -0.072 4.072 4 C -0.161 4.161 5 C 0.174 3.826 6 C 0.084 3.916 7 H 0.025 0.975 8 C -0.507 4.507 9 H 0.069 0.931 10 C 0.018 3.982 11 N -0.920 5.920 12 Si 0.947 3.053 13 H -0.277 1.277 14 H -0.293 1.293 15 H -0.257 1.257 16 C -0.078 4.078 17 C -0.119 4.119 18 C -0.131 4.131 19 N -0.514 5.514 20 C 0.146 3.854 21 Cl -0.047 7.047 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.174 0.826 26 H 0.144 0.856 27 H 0.258 0.742 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.066 0.934 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 3.262 -7.244 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C -0.097 4.097 4 C -0.181 4.181 5 C 0.037 3.963 6 C 0.065 3.935 7 H 0.044 0.956 8 C -0.545 4.545 9 H 0.087 0.913 10 C -0.182 4.182 11 N -0.559 5.559 12 Si 0.772 3.228 13 H -0.202 1.202 14 H -0.219 1.219 15 H -0.181 1.181 16 C -0.097 4.097 17 C -0.177 4.177 18 C -0.189 4.189 19 N -0.225 5.225 20 C -0.018 4.018 21 Cl -0.019 7.019 22 H 0.097 0.903 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.191 0.809 26 H 0.162 0.838 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.512 2.226 -7.079 11.292 hybrid contribution 0.015 0.713 1.174 1.374 sum -8.497 2.939 -5.905 10.756 Atomic orbital electron populations 1.20772 0.87254 1.04386 1.03409 1.20779 0.99319 0.91174 1.04000 1.21825 0.93317 0.98649 0.95901 1.22234 0.95327 0.99867 1.00712 1.22258 0.98274 0.86689 0.89042 1.17911 0.84742 0.97899 0.92984 0.95622 1.21219 1.41676 0.99472 0.92145 0.91268 1.25767 0.95249 0.97529 0.99643 1.70140 1.50205 1.24570 1.10944 0.85722 0.78388 0.80169 0.78485 1.20245 1.21943 1.18133 1.21057 0.96409 0.97522 0.94757 1.21557 0.94610 1.01224 1.00282 1.21740 0.99677 0.97972 0.99485 1.66857 1.07016 1.33962 1.14655 1.21858 0.90155 0.87357 1.02405 1.98319 1.73517 1.33294 1.96723 0.90297 0.88757 0.90863 0.80902 0.83790 0.93323 0.92068 0.94998 0.91880 0.92859 0.94699 0.91504 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 9.63 71.23 0.69 -1.59 16 2 C -0.15 -4.85 5.90 -19.75 -0.12 -4.97 16 3 C -0.07 -2.29 9.86 22.46 0.22 -2.07 16 4 C -0.16 -6.42 9.18 22.36 0.21 -6.21 16 5 C 0.17 8.07 4.88 42.54 0.21 8.27 16 6 C 0.08 4.11 1.73 -12.28 -0.02 4.09 16 7 H 0.03 1.50 7.46 -2.39 -0.02 1.48 16 8 C -0.51 -25.66 5.61 25.60 0.14 -25.52 16 9 H 0.07 3.32 7.72 -2.91 -0.02 3.30 16 10 C 0.02 0.95 5.45 84.65 0.46 1.41 16 11 N -0.92 -54.07 12.88 21.45 0.28 -53.80 16 12 Si 0.95 41.96 29.54 68.60 2.03 43.99 16 13 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 16 C -0.08 -3.16 2.49 -10.79 -0.03 -3.19 16 17 C -0.12 -4.48 8.80 71.98 0.63 -3.85 16 18 C -0.13 -4.90 8.92 71.98 0.64 -4.26 16 19 N -0.51 -23.88 9.55 -174.85 -1.67 -25.55 16 20 C 0.15 5.75 7.27 84.70 0.62 6.37 16 21 Cl -0.05 -1.57 27.46 -2.72 -0.07 -1.65 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.09 1.59 8.10 -2.39 -0.02 1.57 16 24 H 0.07 1.60 6.92 -2.38 -0.02 1.58 16 25 H 0.17 3.93 8.06 -2.91 -0.02 3.90 16 26 H 0.14 5.51 7.19 -2.91 -0.02 5.49 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 2.06 7.30 -2.39 -0.02 2.04 16 32 H 0.03 1.36 6.81 -2.39 -0.02 1.34 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -62.46 297.18 5.29 -57.17 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.08 Total: 11.34 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 3.65 Total: -31.50 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -1.39 Total: -79.35 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.65 kcal Total: -62.46 5.29 -57.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.628 kcal (2) G-P(sol) polarization free energy of solvation -62.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds