Wall clock time and date at job start Mon Mar 30 2020 06:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99776 * 2 1 4 4 C 1.38834 * 120.01226 * 0.18806 * 3 2 1 5 5 C 1.38197 * 120.09754 * 180.24995 * 4 3 2 6 6 C 1.38125 * 120.13688 * 359.79728 * 5 4 3 7 7 C 1.38996 * 120.03143 * 359.97438 * 6 5 4 8 8 S 1.76197 * 120.05121 * 179.97438 * 7 6 5 9 9 C 1.81396 * 103.00192 * 0.02562 * 8 7 6 10 10 C 1.38544 * 120.01497 * 180.02562 * 3 2 1 11 11 C 1.50708 * 120.06904 * 0.02562 * 10 3 2 12 12 H 1.09003 * 109.47050 * 194.72359 * 11 10 3 13 13 N 1.46900 * 109.46700 * 314.72432 * 11 10 3 14 14 C 1.50697 * 109.46823 * 74.72141 * 11 10 3 15 15 H 1.07996 * 120.00592 * 336.33804 * 14 11 10 16 16 C 1.37880 * 119.99269 * 156.33577 * 14 11 10 17 17 N 1.31511 * 120.00489 * 356.71019 * 16 14 11 18 18 Si 1.86808 * 119.99472 * 176.43394 * 16 14 11 19 19 H 1.48503 * 109.47126 * 60.00144 * 18 16 14 20 20 H 1.48496 * 109.46936 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47256 * 300.00198 * 18 16 14 22 22 H 1.09002 * 109.46756 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46985 * 299.99449 * 1 2 3 24 24 H 1.09000 * 109.47402 * 59.99944 * 1 2 3 25 25 H 1.07999 * 119.94965 * 0.02584 * 4 3 2 26 26 H 1.08004 * 119.92670 * 179.76891 * 5 4 3 27 27 H 1.08000 * 119.98664 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47276 * 60.00381 * 9 8 7 29 29 H 1.09002 * 109.47278 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.47137 * 299.99982 * 9 8 7 31 31 H 1.00899 * 111.00200 * 68.42878 * 13 11 10 32 32 H 1.00900 * 110.99795 * 192.38706 * 13 11 10 33 33 H 0.97001 * 119.99627 * 5.39597 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2900 2.3754 0.0039 5 6 1.9155 3.6077 -0.0013 6 6 3.2945 3.6854 -0.0062 7 6 4.0568 2.5231 -0.0054 8 16 5.8160 2.6216 -0.0123 9 6 6.1246 4.4091 -0.0184 10 6 3.4294 1.2838 -0.0005 11 6 4.2522 0.0211 -0.0017 12 1 5.2834 0.2592 0.2592 13 7 3.7032 -0.9217 0.9820 14 6 4.2121 -0.6032 -1.3727 15 1 3.3904 -0.3889 -2.0399 16 6 5.2246 -1.4480 -1.7752 17 7 6.2574 -1.6582 -0.9886 18 14 5.1257 -2.3001 -3.4347 19 1 5.0602 -1.2799 -4.5118 20 1 6.3298 -3.1473 -3.6286 21 1 3.9089 -3.1499 -3.4831 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.2115 2.3181 0.0074 26 1 1.3247 4.5118 -0.0019 27 1 3.7808 4.6497 -0.0107 28 1 5.6836 4.8570 0.8721 29 1 7.1991 4.5923 -0.0225 30 1 5.6767 4.8521 -0.9079 31 1 2.8001 -1.2640 0.6900 32 1 4.3427 -1.6844 1.1478 33 1 6.2706 -1.2822 -0.0946 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259990395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:58 Heat of formation + Delta-G solvation = -14.336484 kcal Electronic energy + Delta-G solvation = -16958.547593 eV Core-core repulsion = 14303.679632 eV Total energy + Delta-G solvation = -2654.867961 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.65373 -36.85867 -34.90010 -31.53559 -30.22255 -29.52142 -28.35712 -26.90645 -25.26190 -22.88628 -21.86829 -20.43241 -17.86922 -16.90462 -16.03083 -15.62373 -15.27019 -15.19287 -14.22900 -13.73649 -13.70357 -13.56535 -13.49826 -12.90662 -12.74598 -12.17957 -12.01064 -11.91205 -11.56915 -11.09323 -10.92856 -10.74783 -10.71525 -10.19756 -10.04961 -9.43336 -9.15517 -9.07356 -8.39035 -7.60477 -7.15054 -6.79208 -6.30490 -4.07558 1.75353 2.00136 2.05047 2.97613 3.44228 3.45521 3.64544 3.86441 4.24302 4.54958 5.19554 5.30078 5.31342 5.36364 5.40011 5.43475 5.46244 5.53319 5.75388 5.85978 5.89332 5.98772 6.40988 6.57145 6.70668 6.83907 6.90897 7.07977 7.49724 7.99017 8.08530 8.39545 8.65560 8.83934 8.99953 9.62485 11.01712 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.010700 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.555342 B = 2616.223432 C = 3762.411571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.290 6.290 3 C 0.150 3.850 4 C -0.221 4.221 5 C -0.091 4.091 6 C -0.174 4.174 7 C -0.063 4.063 8 S -0.073 6.073 9 C -0.165 4.165 10 C -0.031 4.031 11 C 0.230 3.770 12 H 0.060 0.940 13 N -0.852 5.852 14 C -0.606 4.606 15 H 0.047 0.953 16 C 0.028 3.972 17 N -0.906 5.906 18 Si 1.066 2.934 19 H -0.288 1.288 20 H -0.282 1.282 21 H -0.289 1.289 22 H 0.094 0.906 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.334 0.666 32 H 0.325 0.675 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 9.064 2.060 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.202 6.202 3 C 0.102 3.898 4 C -0.242 4.242 5 C -0.111 4.111 6 C -0.198 4.198 7 C -0.176 4.176 8 S 0.170 5.830 9 C -0.333 4.333 10 C -0.038 4.038 11 C 0.121 3.879 12 H 0.077 0.923 13 N -0.382 5.382 14 C -0.647 4.647 15 H 0.066 0.934 16 C -0.178 4.178 17 N -0.542 5.542 18 Si 0.894 3.106 19 H -0.215 1.215 20 H -0.208 1.208 21 H -0.216 1.216 22 H 0.112 0.888 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.138 0.862 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.593 7.705 1.543 9.645 hybrid contribution -2.194 1.638 0.108 2.740 sum -7.787 9.343 1.651 12.274 Atomic orbital electron populations 1.22968 0.80267 1.03251 1.00388 1.86176 1.19462 1.26391 1.88217 1.18633 0.91448 0.83820 0.95874 1.21109 0.99297 0.92576 1.11240 1.20510 0.93789 0.96516 1.00239 1.20859 0.94247 0.96355 1.08303 1.21328 0.96823 0.95089 1.04396 1.86121 1.00104 1.04676 1.92082 1.23759 1.05803 0.98989 1.04777 1.19327 0.90934 0.95026 0.98490 1.18050 0.92657 0.86048 0.91189 0.92261 1.59570 1.07720 1.21045 1.49910 1.22411 1.10824 1.30056 1.01367 0.93422 1.25794 0.91878 0.95495 1.04635 1.70801 1.29052 1.44670 1.09699 0.83594 0.75860 0.76297 0.74826 1.21492 1.20772 1.21552 0.88775 0.93388 0.93424 0.86223 0.86578 0.86629 0.90535 0.88056 0.90365 0.85117 0.86465 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.29 -5.80 7.34 -19.43 -0.14 -5.94 16 3 C 0.15 3.15 6.46 -39.25 -0.25 2.90 16 4 C -0.22 -3.86 9.04 -39.38 -0.36 -4.21 16 5 C -0.09 -1.48 10.03 -39.64 -0.40 -1.88 16 6 C -0.17 -3.07 9.36 -39.34 -0.37 -3.44 16 7 C -0.06 -1.33 6.11 -39.06 -0.24 -1.57 16 8 S -0.07 -1.45 20.56 -107.50 -2.21 -3.66 16 9 C -0.16 -2.26 9.15 101.05 0.92 -1.33 16 10 C -0.03 -0.73 4.95 -104.26 -0.52 -1.24 16 11 C 0.23 5.95 2.30 -70.01 -0.16 5.79 16 12 H 0.06 1.65 4.89 -51.93 -0.25 1.39 16 13 N -0.85 -20.73 8.98 -6.65 -0.06 -20.79 16 14 C -0.61 -17.07 8.33 -34.44 -0.29 -17.36 16 15 H 0.05 1.39 7.80 -52.49 -0.41 0.98 16 16 C 0.03 0.78 5.46 -17.82 -0.10 0.69 16 17 N -0.91 -26.86 13.62 55.43 0.75 -26.10 16 18 Si 1.07 25.50 29.91 -169.99 -5.08 20.42 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 24 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 25 H 0.12 1.71 6.29 -52.49 -0.33 1.38 16 26 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 27 H 0.12 1.71 5.87 -52.49 -0.31 1.40 16 28 H 0.08 0.94 7.75 -51.92 -0.40 0.54 16 29 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 31 H 0.33 7.94 6.25 -39.29 -0.25 7.70 16 32 H 0.32 8.01 8.83 -39.29 -0.35 7.67 16 33 H 0.27 8.03 6.47 -40.82 -0.26 7.76 16 LS Contribution 284.25 15.07 4.28 4.28 Total: -1.00 -31.61 284.25 -7.04 -38.65 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -3.82 Total: 13.44 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -0.76 Total: -20.29 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.70 Total: -46.90 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.14 Total: -5.94 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.61 -7.04 -38.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.312 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds